Njan002081.1
Basic Information
- Insect
- Noctua janthina
- Gene Symbol
- -
- Assembly
- GCA_963576755.1
- Location
- OY755051.1:18546884-18558464[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.015 27 5.2 0.0 1 15 34 48 34 58 0.85 2 3 8.2e-14 1.5e-10 41.3 0.0 2 44 65 107 64 108 0.94 3 3 1.5e-12 2.7e-09 37.2 0.0 1 38 120 157 120 164 0.90
Sequence Information
- Coding Sequence
- ATGACAATTGGAGTAAACGTGTTCATGAGTGAtaaccgcgaatcggcaaatgAAGGCACTATTAAATGGGCTTTGAAGCACGCACGAGGTGTTTTGTGGACTGAGGAAGACTTACGTGCTGCTGTGGCCGCTGTTAAAAGTGGACGTTCTACTAAATTGGGTTTGAAGCGGGCAAAACGTTGTCAGTGGCCAGAAGAGGACTTACGCGCTGCTATGGATGCTGTTAAAAATGGACATATGACACAGAAAGAAGCAGCTGAACGATATGGAATTCCAAGATCAACTCTCAGCGATCATTTGAAATCGGGAATCTTCGTTAAACATTGGATTGAATTGCCTCCAAGGAGAGTAAAATGGACGGAGGAAGATATGCAAGGGGCAATAGCGGCAGTAATTCACGGTAACATGACACAGTGCGCTGCAGCAGAACTATTTGGCATTCCCAGACCAACACTAGCTGATCACCTGTCTAAAGGAAACATCGGGAAACGAGTGGGTCGCCATTCTATAATGAACGAAACCCATGAAAAGTTCCTCGTCAGCAAACTAATAGAGCTAGCTAACAATGAGCAGAGTGAGCAGCTACCAGAATGGGCTTCAATATATTTCCTTAAAGTTACAGACAATGAGCTGAAATGCAATCTTTGTGATGTAACCTTAAAAGCAGAAGATAAATCGCTTGACCTTCTAGATCACTTGAAAGTTGACCATAAAGACATATATGACCTGCACAAAGATAACCCGGAGGCTACGGTAGGATTCCGGATTGAGTTTCTACATTTAAATGTGTTGAAGGATGATGGGGACCCAAAGACTCAACCCGTTTTACTTGGTGAGGTCTGTGAAACTACAACAGAAACTATGGAGGAGAAGGGAGAGGAAATTACTGTCAAACCTGATGAATCCAACTTGCATTTTGTGCTCCTGGATGGAAAGACAACCAAGAAATCTAGGCGGGAGAGTACAGggccacggaaACGCAGCTGGGTGTGGAAGTACTTCGATAAACTCAGCAACATCATCTACCGCTGTAAGCTTTGCAACGTGGTGCTGTCAATCAAGGGTTGCAATTCCAACAACATGAACCGTCACGTCCGGTCGAGACATCCAACTGTTTTCAAAAGTGAGGTGACAAAGAGAGACAAGGTGGAGAATGTCCATATGTTGACGAGTGAGACAGACACCCCATACGCTATTAAGACAGAAGAAATTTATGCAAGTGATCGGGATTATGAGGAGATTCCTACTGATAGCCCCACCCAGAAGCTGCGTCGCAGTTGGATCTGGTCGTACTTCGACCGCGTGTCGACCACGCAGGCGCGCTGCAAGCTGTGCGAGCGCCACATCTGCCACGGCGGCAACGCCACCGGCAACATGAACCGACACCTCAAGATGATACACCATAAGACTGCTGTTAATATGCCTAGTGACATGAGCTGGGTGTGGAAAGTCTTCGAGGCGGTGGACAACGACTTCTACAGCTGCAAGATCTGCCAGTACAAGTGTCTAAAGTGCAGTGACGTGGACAAGGACATGAACGGAATTCTGAACCACCTCAAGTTAGAACACGGTGTGATATCCGGTGATCAGATCATTACGGGGGCAGACGTTGACAGTGAAGAGACCTGTTAG
- Protein Sequence
- MTIGVNVFMSDNRESANEGTIKWALKHARGVLWTEEDLRAAVAAVKSGRSTKLGLKRAKRCQWPEEDLRAAMDAVKNGHMTQKEAAERYGIPRSTLSDHLKSGIFVKHWIELPPRRVKWTEEDMQGAIAAVIHGNMTQCAAAELFGIPRPTLADHLSKGNIGKRVGRHSIMNETHEKFLVSKLIELANNEQSEQLPEWASIYFLKVTDNELKCNLCDVTLKAEDKSLDLLDHLKVDHKDIYDLHKDNPEATVGFRIEFLHLNVLKDDGDPKTQPVLLGEVCETTTETMEEKGEEITVKPDESNLHFVLLDGKTTKKSRRESTGPRKRSWVWKYFDKLSNIIYRCKLCNVVLSIKGCNSNNMNRHVRSRHPTVFKSEVTKRDKVENVHMLTSETDTPYAIKTEEIYASDRDYEEIPTDSPTQKLRRSWIWSYFDRVSTTQARCKLCERHICHGGNATGNMNRHLKMIHHKTAVNMPSDMSWVWKVFEAVDNDFYSCKICQYKCLKCSDVDKDMNGILNHLKLEHGVISGDQIITGADVDSEETC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01085058; iTF_01085578; iTF_01063930;
- 90% Identity
- iTF_01063930;
- 80% Identity
- iTF_01063930;