Nfim030269.1
Basic Information
- Insect
- Noctua fimbriata
- Gene Symbol
- -
- Assembly
- GCA_905163415.1
- Location
- LR990950.1:5881761-5900288[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 7.9e-07 0.028 15.5 0.2 20 48 455 485 442 488 0.81 2 5 0.00014 5 8.3 0.0 26 49 517 540 512 543 0.92 3 5 0.81 2.8e+04 -3.8 0.0 22 31 647 656 639 674 0.69 4 5 0.055 1.9e+03 -0.0 0.1 27 46 747 766 741 769 0.86 5 5 0.00024 8.5 7.5 0.1 24 52 772 800 767 801 0.93
Sequence Information
- Coding Sequence
- ATGAAGTGTTGTATAGAAAACTGTGTGAATAATGGGAAAGTGAGAAAAATAAATCAGCAAAGTGCTTCCTTTACAGAGAGAATCACTTATCATTTGTTCCCAAGAGATCCAAAACAGCGTGAAAAATGGCTGAAATCCCTCGGCATACCAAACTTGGTGCCGACGAATCGAACACTGGTTTGTTCCGACCATTTCAAGGAAgacgatttttactttactcaGAACGAAATCAGAAGGATCAAGATTGGTGCAGTGCCATTAATTGAGGGTGACTGTAATGGACCGGCTGCTTTAAGGACCTGCAAGCTATGCCTTTCATTGGACGTCAAGATGTACCAAATAAAAGATCATGGTTTGGACCGAATGTATCAAGACATCATTGGAATAGCGCCAAGAGTAGACGCCCAGAACAGACTCCCAATGGGTATATGTTGGGAGTGCACCGCGCGGCTGCAGTCAGCCTCTGCATTCAGATCTAAAGCGCTTTTCAGCGATGCATTGCTTGAAGATCACCTGAAGAACAACGCCGATctaaatatcaaagatatacaaaacaTACATGAACacgaaactaatttaaaatcttCCTTGGCAATACAAGAAGTGTTCAGATTTAATAGTCATAATATCGAAGAGCACACCCCAAACACATTCATAAAAACTGAGGTTCTTGGTATACCTAACAACGAAGAAATCGAATTTGATGTACAGCATTTAGTAACAGAAAAAATCACTATCAAAGATGAGCGAAAAAATGAAGTTGTAATAGACAATTTTCCGAGCACTGATTTCAAAACCGAAGTCGATCTCATACCTACTAATGAAATCGAGACTAATGAAATCGAGACTATTGAAGAACAACCAAGTTTTGACGATGACGTTAGTGACAATGATAATAGCGAGACTGTTATAGAAAACGTTTTTGTCAATGAATCGAGAAAAGATCTTGATAAAGTCTTGAAAAATGAGAAAGAAACAGCTTCGATTGAGTTTGCGGCGAGTCTCTCCGAAATTATGCAGACGAAcgatgatgaattgatgaattTAGCTAAGAACTTGACAACtgaagatgaagatgatgatgatgacgatgatgaaaaGAGTAATGCTTCCGATGATGGAGGTATTAAAATAAACCTCACGAATAAAACGGTTAGAGCCAAGAAGAAACAGCCTTACGTAAAACCGTGTACGCCAATAGACGAGAATATTTTCTCCGTGAAAACGTTAACCCACGAGGACCTGAGGCGAGAGATAATCACGAGACGAGAGTCCGACAAGTATAAAAAAGCGCCTTTCAAGTGTATTGTGTGCTTTAGGGGATTCCCGACCAAGGAGAAAAAGGAGAGACATATGATTAAACATAGTgagCAAAGCGGaccaataaaatgtaacatatgTCATGTCCGTATGAAGAAATCTAGAGATTTGCGCGCGCATATGAAAAGACAACACACTATGGAATTTATATGCAAACTGTGTCCCATGGTTACGAGGATTCGGAACGTCGCATTAGGACACATGAAGTACCACGCTGGTAACAAATATGAGTGTCCGCAGTGTTTCGTTGTGTTcgaAAAACAAACGACGTTACTAAATCATCTCCGTCTGAAGCACATGTCAGCGTATGTCTGCGAACTATGTGGCTACACATTTGTGAGTAAGAATGGCGTGGATGTACACAAGCGAATGAAGCATAAGTTCTTTGATgctaatacAGAATTCATAGGTCCACATTGTGATGTTTGTGACGTGAAGTTCTTGACGGAGAAGGCGTATAACCGACATCTGAGGCTGTCTTCTAAACATATCACGGAGGATGACCCTAACCGTATGAGCAATGATCCTTCAATAAAGCAGCGTCGACTCGGCACATCGAATTGGCATAGCGTCAGAAGACCCATCATACATCGTAAGACCGAAAGCACACCACCTAATAATGGGCCTGTCACTTGTGAACAGTGTGGCGTAGAGCTAGAAAGTCTCCGGGTATACGCCTCCCACTTCAGGTACGCTCACCCGGGCCTCAGTCGCACACAGTTCACGTACTCCTCCACGCCTTATATGTGCGAACATTGCGGGAAGTTCTTCTTGaacacAACCACCCTATCCTGCCACATGTGGGTTCACACCGGGCAAAAACTCTTCCAATGCGACCACTGCAACAAAGCGTTCAGCATGAAAGCGAACCTCGCGGGCCACATGCGCCAGCACGAAGGCATCCGACGCACGTACGACTGTCGCGTGTGCGGCAAACACTTCACGTTCAGCTACAACCTGACCAGGCATATGTTTCTACACACGGGCCTAAGGCCATTCAAATGCGACGCATGCGACAAAACGTTCCGTACATCAGGGGAACTGCGCGCTCATATCGACCATGTGCACTTGAAGAAGCCGCGACCTAAACGAGTTAGACGCAAGGCGAACAAGTGTGAGCTGACCACCTTAGAGTATTAA
- Protein Sequence
- MKCCIENCVNNGKVRKINQQSASFTERITYHLFPRDPKQREKWLKSLGIPNLVPTNRTLVCSDHFKEDDFYFTQNEIRRIKIGAVPLIEGDCNGPAALRTCKLCLSLDVKMYQIKDHGLDRMYQDIIGIAPRVDAQNRLPMGICWECTARLQSASAFRSKALFSDALLEDHLKNNADLNIKDIQNIHEHETNLKSSLAIQEVFRFNSHNIEEHTPNTFIKTEVLGIPNNEEIEFDVQHLVTEKITIKDERKNEVVIDNFPSTDFKTEVDLIPTNEIETNEIETIEEQPSFDDDVSDNDNSETVIENVFVNESRKDLDKVLKNEKETASIEFAASLSEIMQTNDDELMNLAKNLTTEDEDDDDDDDEKSNASDDGGIKINLTNKTVRAKKKQPYVKPCTPIDENIFSVKTLTHEDLRREIITRRESDKYKKAPFKCIVCFRGFPTKEKKERHMIKHSEQSGPIKCNICHVRMKKSRDLRAHMKRQHTMEFICKLCPMVTRIRNVALGHMKYHAGNKYECPQCFVVFEKQTTLLNHLRLKHMSAYVCELCGYTFVSKNGVDVHKRMKHKFFDANTEFIGPHCDVCDVKFLTEKAYNRHLRLSSKHITEDDPNRMSNDPSIKQRRLGTSNWHSVRRPIIHRKTESTPPNNGPVTCEQCGVELESLRVYASHFRYAHPGLSRTQFTYSSTPYMCEHCGKFFLNTTTLSCHMWVHTGQKLFQCDHCNKAFSMKANLAGHMRQHEGIRRTYDCRVCGKHFTFSYNLTRHMFLHTGLRPFKCDACDKTFRTSGELRAHIDHVHLKKPRPKRVRRKANKCELTTLEY*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00301578;
- 90% Identity
- iTF_01063190; iTF_01062875;
- 80% Identity
- iTF_01063190; iTF_01062875;