Basic Information

Insect: Noctua fimbriata
Gene Symbol: Bcl11b
Assembly: GCA_905163415.1
Location: LR990934.1:4752019-4758837[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0033 0.3 12.6 2.1 2 23 73 94 72 94 0.96

2 12 0.036 3.2 9.3 0.4 3 23 102 123 100 123 0.92

3 12 1.1 97 4.7 0.2 2 23 131 153 130 153 0.89

4 12 2.2e-05 0.002 19.4 1.9 1 23 159 181 159 181 0.97

5 12 8.1e-08 7.4e-06 27.1 2.2 1 23 187 209 187 209 0.96

6 12 0.0093 0.84 11.1 2.4 1 20 215 234 215 236 0.93

7 12 0.74 67 5.2 1.1 3 19 255 271 254 276 0.90

8 12 5.3e-06 0.00048 21.4 1.7 1 23 657 679 657 679 0.98

9 12 3.8e-06 0.00034 21.8 4.1 1 23 686 709 686 709 0.97

10 12 0.014 1.3 10.5 4.2 1 23 717 740 717 740 0.95

11 12 0.0026 0.23 12.9 4.4 1 23 746 770 746 770 0.96

12 12 6e-06 0.00054 21.2 0.9 1 21 776 796 776 797 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0033	0.3	12.6	2.1	2	23	73	94	72	94	0.96
2	12	0.036	3.2	9.3	0.4	3	23	102	123	100	123	0.92
3	12	1.1	97	4.7	0.2	2	23	131	153	130	153	0.89
4	12	2.2e-05	0.002	19.4	1.9	1	23	159	181	159	181	0.97
5	12	8.1e-08	7.4e-06	27.1	2.2	1	23	187	209	187	209	0.96
6	12	0.0093	0.84	11.1	2.4	1	20	215	234	215	236	0.93
7	12	0.74	67	5.2	1.1	3	19	255	271	254	276	0.90
8	12	5.3e-06	0.00048	21.4	1.7	1	23	657	679	657	679	0.98
9	12	3.8e-06	0.00034	21.8	4.1	1	23	686	709	686	709	0.97
10	12	0.014	1.3	10.5	4.2	1	23	717	740	717	740	0.95
11	12	0.0026	0.23	12.9	4.4	1	23	746	770	746	770	0.96
12	12	6e-06	0.00054	21.2	0.9	1	21	776	796	776	797	0.95

Sequence Information

Coding Sequence: ATGGATTCGAATTTACCATTTTTTAGTCTCCCATTCGTGGATTCGGAGACTTCAGATTTTTTGTCGAAAATCAAACCGCAGGAGTGTGCGTACGATGAGTTGCACGCCACGTTACCATCCCATGGTGCTTTGTTGGGCCCTGACGATGTCTTGGCCCAGTTTCTATCTGGAGACGAACCGTTGGAGGAGCCCGACTTGAACGGTCCTACTACGTTGCACTGTGAGATCTGTAAGAAGCGGTTTGACAATGCTAAGAAGTATTATGGACATTTGAGAGTCCATTCCAAGGATAATCTTTGGTTTTGTGACCAATGTCCCGACCAGAAGTTCTCGACGAAGCAACAGCTCATGAGACATGGATTGATCCACAAGCCGCTGGGGAGAGAGTGGAAATGTCTGCAGTGCACCATGGCTTTCGAGGCCCTGTGGAAACTGCAGCAGCATCTGTTTGCCAAGCATTTGAACTACAAGCCTCATAAGTGTGATCAATGTGAGAAGGCTTTCACTAAGGCTTCAGACTTGGAGAAACATAAAACCATACATAGTGATCTGAAGAGGCATGCATGTCCTGAATGTGACATGCGTTTCAAAGACAAGTCGAATCTGAAGCGACACATGCTGCGACACAACAGGGTTAAGCCTTACTGTTGTTCAGGTTGCGGAAATCGATTTAAACAGCTGGCATCAATGAAGCGTCACGCGCAGCACTGCACGCTCAACAAGGAGTCCACCGAGGCAGACAGGAGCTTTCGCAAGAACTACTGCCGCGCGTGTGGCATGAGCTTCCAGTACAAGAGCGCTTTGTTAGAGCACTGCGTCAGGCAACACACCAGCACGGGGGGGGTTGCGCAAAACGCAAAACCGCCGGAACCCGACAAAGAAGATAAGAGCCATCTGAACGACACAAACCGCATCGTAGACAACATTGTGGACGACATCCTGTCCGCTGAGGACGATTACATGACCATGCCGACACAAAACGAGGTACACAATGTTTACAACCCAAATGATATCGACAATAACCCAGAAAACTTAATGCAAATCGAATTGTTAAAGGAAATGAATCAACTACACATTTTAGACGGAGAACTTTTCTACAATGACATAGATTTTGACAGCATTCAACCTAGTCACATGTTTAATACTAACACAAATGATATGGATTACAGTACCGATAAAAACGCTGAAATCTTATTCGACTTTACCGATGGAAGCAAAAGTATGGACCAGGATATCATGAACACTTTATTTCATGTCAAAGCTGAGTACTTACCTGACGAACTATTGAATCCACCAGAAATTGTAAATCCTCCTGAGAAAAGTAACGAATTAGACAATCACAATCATGTATCTGTGAACGAATGCGCTACCATATTTGAAAGTGACGTTGATTTAGAAGCTAGTACAAATCTAGCTGCAAACTTAAACCAGTTGATCGGTGAAAATAATGTCCAATACATTTCTACAGAGGACGATGATACatttataataagtttaaataGCGAAATTGATGCCGAACAATTAACCGATATGTTGAATCTCGGCGTAGAGTTAGTTAATGATAAGAATAAGGAGCCAAGTATACCGGAAATTAAACAAGAACATGTAAGTTTAGCCAATGTTGAGCTTTACGTAAAGTTTGAAAAGCCTTTACAAGTGAAAGAGGCCCAAAATAAGCATATAGAAGAGCGCTTAACACACCAACCTGTGGTTGTTAAAATTGAAGAGCCCATGAGTATACCCGAAATTAAACAAGAACATGTAAGTTTAGCCAATGTGGAGTTTTATGTAAAGTTTGAAAAGCCTTTACAAGTGAAAGAGCCCCAAACTATGCAAATAGAAGAGCGCTTAACACATCAACCTGTTGTCGTTAAAATTGAAGAGCCTATGAGTGAACCGCAAATGAGTTTGATGGCCACGGAAGAGAAGAAGAAAGTTATTAAGAGGAAGCCTAAGACGAGGGTGCTGTATGTTTGTAGAACATGCAATAAGGTGTTTAAGAAGAATGATAATTATAGGTCTCATATAGCAACGCACGAGCCATCCCTTCGGCGGCACAAGTGCAAGATCTGCGGCGAACGCTTCAGCTACCGCTCCACGTTGAACAAGCACACGCGCAACCTCCACACGCCTTACGTCCCGGAGGAGCATTGCTGCCAGATATGTAAACGGAACTTCAAGTTCGCGTGGATGTTGAAAGAGCATTTGGAGCGCGACCACGACGGACTCACGCCGCATACGTGCGACTACAAGGACTGTCGCAAAAGCTTCTTCAAGAAATCGGACCTCGCCGTGCATAAGAGGTACCACACTGGAGAGCGTCCGTATTCCTGCGAGGTGTGCAAGAAAGCGTTCCCCCACGCCAGCCATCTCAAGAGACACGAGCGAGCGGTTGACTGCACCAAGGAGTAA
Protein Sequence: MDSNLPFFSLPFVDSETSDFLSKIKPQECAYDELHATLPSHGALLGPDDVLAQFLSGDEPLEEPDLNGPTTLHCEICKKRFDNAKKYYGHLRVHSKDNLWFCDQCPDQKFSTKQQLMRHGLIHKPLGREWKCLQCTMAFEALWKLQQHLFAKHLNYKPHKCDQCEKAFTKASDLEKHKTIHSDLKRHACPECDMRFKDKSNLKRHMLRHNRVKPYCCSGCGNRFKQLASMKRHAQHCTLNKESTEADRSFRKNYCRACGMSFQYKSALLEHCVRQHTSTGGVAQNAKPPEPDKEDKSHLNDTNRIVDNIVDDILSAEDDYMTMPTQNEVHNVYNPNDIDNNPENLMQIELLKEMNQLHILDGELFYNDIDFDSIQPSHMFNTNTNDMDYSTDKNAEILFDFTDGSKSMDQDIMNTLFHVKAEYLPDELLNPPEIVNPPEKSNELDNHNHVSVNECATIFESDVDLEASTNLAANLNQLIGENNVQYISTEDDDTFIISLNSEIDAEQLTDMLNLGVELVNDKNKEPSIPEIKQEHVSLANVELYVKFEKPLQVKEAQNKHIEERLTHQPVVVKIEEPMSIPEIKQEHVSLANVEFYVKFEKPLQVKEPQTMQIEERLTHQPVVVKIEEPMSEPQMSLMATEEKKKVIKRKPKTRVLYVCRTCNKVFKKNDNYRSHIATHEPSLRRHKCKICGERFSYRSTLNKHTRNLHTPYVPEEHCCQICKRNFKFAWMLKEHLERDHDGLTPHTCDYKDCRKSFFKKSDLAVHKRYHTGERPYSCEVCKKAFPHASHLKRHERAVDCTKE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01527643;
90% Identity: iTF_01063994;
80% Identity: -