Nfim029420.1
Basic Information
- Insect
- Noctua fimbriata
- Gene Symbol
- -
- Assembly
- GCA_905163415.1
- Location
- LR990949.1:6704330-6715972[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 4.8e-05 0.0044 18.3 1.0 1 23 90 113 90 113 0.96 2 24 0.073 6.7 8.3 0.1 2 23 142 164 141 164 0.95 3 24 0.00011 0.0098 17.2 0.9 1 23 256 279 256 279 0.96 4 24 0.23 21 6.8 0.0 2 23 308 330 307 330 0.95 5 24 0.033 3 9.4 2.8 1 22 416 437 416 439 0.90 6 24 0.76 69 5.1 0.1 2 23 469 491 468 491 0.94 7 24 0.61 55 5.4 4.9 2 23 514 535 513 535 0.97 8 24 0.0055 0.5 11.9 0.1 1 23 539 561 539 561 0.97 9 24 0.2 18 7.0 3.5 1 23 566 589 566 589 0.92 10 24 0.073 6.6 8.3 0.9 2 23 597 619 596 619 0.93 11 24 0.0002 0.018 16.4 0.9 2 23 627 649 626 649 0.96 12 24 0.0021 0.19 13.2 2.1 1 23 655 677 655 677 0.95 13 24 4.4e-07 4e-05 24.7 2.2 1 23 683 705 683 705 0.99 14 24 8.5e-05 0.0077 17.6 0.8 1 21 711 731 711 732 0.96 15 24 0.0038 0.34 12.4 0.3 1 23 806 829 806 829 0.93 16 24 0.12 11 7.6 0.0 2 23 858 880 857 880 0.93 17 24 3.2 2.9e+02 3.2 6.6 2 23 903 924 902 924 0.96 18 24 0.0038 0.34 12.4 0.9 1 23 928 950 928 950 0.98 19 24 2.4 2.2e+02 3.5 0.5 1 13 955 967 955 975 0.78 20 24 0.13 12 7.6 0.4 2 23 987 1009 987 1009 0.93 21 24 0.00016 0.014 16.7 2.2 1 23 1016 1039 1016 1039 0.98 22 24 0.0024 0.22 13.0 5.4 1 23 1045 1067 1045 1067 0.98 23 24 4.8e-06 0.00044 21.5 0.9 1 23 1073 1095 1073 1095 0.99 24 24 0.13 12 7.5 7.0 1 23 1101 1124 1101 1124 0.94
Sequence Information
- Coding Sequence
- ATGAATTTAAAGGATTTCATCTTCACCGTACTTGACGAAGAATCGATGTTTCATATAAAACTGAGAAGTACTGGAACTATAACTATTGAAGTTCCGAAAGCAAATACTGAAGAAAAACCTAAACGGAAGAGAATTAAAGGAGTTCTCACTGAGATCGGTAAAGCGAGGATAGAAATGATAGAGGAACTGAAGAAACACCGCTCAAATCTTCAAGAAATTCTAACTTACTCCAATGCCACGCCTTTTCTTGGATTAAATTATCGAGGTTACATGTGTTGCTACTGTGATAGGCAGTATCCAGACCCTGCAGATCTGAAGAAGCATATTCGTGACAATCATCGGCGCTTGTACAGTGCTGTAACTCCTATTGAAAAGATTACCAGAAAAGATGAGTTTTGTGTCAAGCTGGACTTAACGGATTTACGATGCACACTCTGCGACGCTGACATAGACACTTTAGAAAACTTGTTAAAACACCTAATGAGTGAACACGAAAGGGGAATACACATGGACATTAAAAACCAATTCTTACCATTTAAGTTCAGTACTGAAGTCTTAAAATGTTGTACTGGAACTATAACTATTGAAGTTCCGAAAGCAAATACTGAAGAAAAACCTAAACGTAAGAGAATTAAAGGTGTTCTCACTGAGATCGGTAAAGCGAGGAGAGAAATGTGCGAGGAACTGAAGAAACACCGCTCAAATCTTCAAGAAATTCTTACTTACTCCAATGCCACGCCTTTTCTTGGATTAAATTATCGAGGTTACATGTGTTGCTACTGTGATACACAGTATCCAGACCCTGCAGATCTGAAGAAGCATATTCGTGACAATCATCGGCGCTTGTACAATGCTGTAACTCCTATTGAAAAGATTACCAGAAAAGATGAGTTTTGTGTCAAGCTGGACTTAACGGATTTACGATGCACACTCTGCGACGCTGACATAGACACTTTAGAAAACTTGTTAGAACATCTAAAGATTGAACACGAAAGGGAAATACGCATGGACATTAAAAACCAATTCTTACCATTTAAGTTCAATAGTGATGTCTTAAAATGTTgTATCATCAAATTAAAGAAAGAACCTGAACCAAAACCAAATAAACCGACAGCCAAGCCAAAGACGCCAGCTGGTAAAACAAAGCCATCTGTAAGAGAAGAACTAGAAAAGCAATCGAATAACACGCAAATGATTATAATGTGCAGCAATGCCACCCCTTTCCTTCAAAAGATAGACACGGGGTACGTCTGTTGTTACTGCAGGGAACAGTTTCAGGACCCTGCCGATCTAAAGAAGCATAACCATGAAATTCATGGAGACAAATATGACCCAGTATCTCCAAACGTGATTATGAACAGCAGGAAATCTGAATTCTGTATCAAATTAGACATTACAGGCTTACAATGTACACTTTGCAGCACAGACATTCCGTCTTTAGAGGCACTTAAAGATCACCTCCAAAATGAGCAcaaaaagaagatatttacggATATCAAGAATAAGATCATACCATTCAAGTTCGAAAGTGAAGATATCCGTTGCTGCATTTGTTCTAACGTATTCGAAAAGTTTCGGAAATTACAGGAACATATGCATTCACATTACAGGAACTTTGTTTGCGAGCAGTGCGATTTAGGTTTTGTGACCCTGTTAAGTCTAAAAAGTCATgcagaaaaacacaaattaggCGAATTCAAATGCCAGTATTGCCCCAAGATATACGATACACATCGAAAGAAAAAGTCGCACGAAAAAGCAGTGCATGTAACGGGATATTTGTTGAGCAGATGCGGGTACTGTAACGAACGATTCACGAGTACCAAAAACAAGGATGAACATTTAGCCAAAGTTCACGGCGTTCAGTTACGTGCACTCAAATGCCAAGCATGTGACAGAACTTTCGAGAACAAAAGAGCTTTGACAATACACACGAGGAGAGATCACTTGATGGAAAGAAAACATAAATGCTCCCAATGTGAAATGTCATTCTTCAACGCTAGTAGTTTAAAAATGCACGCAGTCAAGCATTCAGGCTTGAAGGAGTTTCAATGTGACGTATGTCAGAAATCTTACGCTCAAAAGAAGACTTTGACGCAGCATATGAGGACACATTCAGATGAGAGACGGTTTAAGTGCGAACGCTGCGAGCAGGCATTCGTAAAGAAGAGTAGTTTGAATACACATATGAAGAGTAACCAAGAAACAGTGAGCAAGAATATTGAAATCAAACCTTTAGAGCCAGCTGTATTAGTTATCGTAAGACctgaaagaaaaaccaaattgcAGGTAAATGCTACGCCCAAACTGCACGCCGGACCGCATGTCAGTGAGTTGGGGAAACATCGCCACAACCTCGGACAAATTTTACAATGTTCTAACGCAACACCAATAATGCGTCGCGGAGGCGTTGGATACATGTGCAGTTACTGTTTTCAAGAGTTCCCAGAGCCTGTAGACCTAAAGAAGCATACACTAGCAAATCACACCTCTAAAACAGACCCTACAGTTAGGTACGCTAAAAGCCCAGGCATATCAGAATACAATGTCAAAATAGACATCACTAACCTCGAGTGTACGGAATGTGCTAAAACCATAGCCAGTCTAGAAGATCTATTGACCCATCTGCAAGATGAgcataaaaaaatgatttacacTGACATTCCAAATCATTTCATACCTTTCAAATTTCTAACAGAAGATCTTACTTGCTGCCTATGTCAGAGTACTTTCGACAAGTTTAAAAAACTTCAAGAGCATATGCACTCGCACTACAGGAACTACGTATGTGAAGAATGCGATTCTGGGTTCGTTACTCGGGGATGTTGGCTCAGACATCGCAGCACACACTTAAAAGGAGACTTTCCTTGCAGCTTCTGTCCGAAGGTCTACGATACCATGTTGAAGAAGCGGTCTCATGAGAGATGTAGCCATATTCACGCCGATATGCTTCCCAATAGATGCGCATTTTGCAACAAAGGCTTTAAAGAGTACTATGATAAGGAAATCCACATGTCTGAAGTCCACGGTGCTAAAGCATCACTGTACAAATGTAATGCTTGCGACAGGAGTTATAAAAGCAAGCGTAAATTGAGGATCCACGTCAAAAGAGACCATCTGTTAGAGAGGAGGCACAAATGTCTGACTTGTGACATGACATTCTTTTCTTCCCATGATGTTAAGAAGCATATGATCACACACACGGGAGAAAGGAACTTTCAATGCGAAATTTGTCTGAAATCTTTTGGGAGAAAATCGACGGTTCAAAGTCATATGAGAATCCATAACAATGATCGACGATTTAAATGTGAATTTTGTGGGATGTCGTTTATTCAAAAGTGTAGCTGGAAAAGTCATTGTAAGACTACGCATGGACAGATAGTTTGA
- Protein Sequence
- MNLKDFIFTVLDEESMFHIKLRSTGTITIEVPKANTEEKPKRKRIKGVLTEIGKARIEMIEELKKHRSNLQEILTYSNATPFLGLNYRGYMCCYCDRQYPDPADLKKHIRDNHRRLYSAVTPIEKITRKDEFCVKLDLTDLRCTLCDADIDTLENLLKHLMSEHERGIHMDIKNQFLPFKFSTEVLKCCTGTITIEVPKANTEEKPKRKRIKGVLTEIGKARREMCEELKKHRSNLQEILTYSNATPFLGLNYRGYMCCYCDTQYPDPADLKKHIRDNHRRLYNAVTPIEKITRKDEFCVKLDLTDLRCTLCDADIDTLENLLEHLKIEHEREIRMDIKNQFLPFKFNSDVLKCCIIKLKKEPEPKPNKPTAKPKTPAGKTKPSVREELEKQSNNTQMIIMCSNATPFLQKIDTGYVCCYCREQFQDPADLKKHNHEIHGDKYDPVSPNVIMNSRKSEFCIKLDITGLQCTLCSTDIPSLEALKDHLQNEHKKKIFTDIKNKIIPFKFESEDIRCCICSNVFEKFRKLQEHMHSHYRNFVCEQCDLGFVTLLSLKSHAEKHKLGEFKCQYCPKIYDTHRKKKSHEKAVHVTGYLLSRCGYCNERFTSTKNKDEHLAKVHGVQLRALKCQACDRTFENKRALTIHTRRDHLMERKHKCSQCEMSFFNASSLKMHAVKHSGLKEFQCDVCQKSYAQKKTLTQHMRTHSDERRFKCERCEQAFVKKSSLNTHMKSNQETVSKNIEIKPLEPAVLVIVRPERKTKLQVNATPKLHAGPHVSELGKHRHNLGQILQCSNATPIMRRGGVGYMCSYCFQEFPEPVDLKKHTLANHTSKTDPTVRYAKSPGISEYNVKIDITNLECTECAKTIASLEDLLTHLQDEHKKMIYTDIPNHFIPFKFLTEDLTCCLCQSTFDKFKKLQEHMHSHYRNYVCEECDSGFVTRGCWLRHRSTHLKGDFPCSFCPKVYDTMLKKRSHERCSHIHADMLPNRCAFCNKGFKEYYDKEIHMSEVHGAKASLYKCNACDRSYKSKRKLRIHVKRDHLLERRHKCLTCDMTFFSSHDVKKHMITHTGERNFQCEICLKSFGRKSTVQSHMRIHNNDRRFKCEFCGMSFIQKCSWKSHCKTTHGQIV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00928915;
- 90% Identity
- -
- 80% Identity
- -