Lpor026786.2
Basic Information
- Insect
- Lycophotia porphyrea
- Gene Symbol
- -
- Assembly
- GCA_950005105.1
- Location
- OX465413.1:5089966-5096538[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.00055 0.046 14.9 0.9 1 23 32 55 32 55 0.96 2 27 0.044 3.6 8.9 0.1 2 23 84 106 83 106 0.96 3 27 6.7 5.6e+02 2.1 4.0 2 23 129 150 128 150 0.96 4 27 0.0053 0.44 11.8 0.3 1 23 154 176 154 176 0.98 5 27 0.053 4.4 8.7 2.0 1 21 181 201 181 204 0.88 6 27 0.36 30 6.0 1.9 2 20 212 230 211 234 0.86 7 27 0.0034 0.29 12.4 3.0 2 23 242 264 241 264 0.96 8 27 0.025 2.1 9.7 1.9 1 22 329 350 329 352 0.90 9 27 0.49 41 5.6 0.1 2 23 382 404 381 404 0.95 10 27 1.4 1.2e+02 4.2 5.5 2 23 427 448 426 448 0.97 11 27 0.0047 0.39 12.0 0.1 1 23 452 474 452 474 0.97 12 27 0.085 7 8.0 2.0 1 23 479 502 479 502 0.92 13 27 0.062 5.2 8.4 0.9 2 23 510 532 509 532 0.93 14 27 0.00017 0.014 16.5 0.9 2 23 540 562 539 562 0.96 15 27 0.0018 0.15 13.3 2.1 1 23 568 590 568 590 0.95 16 27 5.9e-07 4.9e-05 24.3 2.1 1 23 596 618 596 618 0.99 17 27 7.3e-05 0.0061 17.7 0.8 1 21 624 644 624 645 0.96 18 27 0.0015 0.12 13.6 1.3 1 23 719 742 719 742 0.93 19 27 0.22 19 6.7 0.0 2 23 771 793 770 793 0.93 20 27 2.7 2.3e+02 3.3 6.6 2 23 816 837 815 837 0.96 21 27 0.0018 0.15 13.3 0.7 1 23 841 863 841 863 0.98 22 27 2.1 1.7e+02 3.7 0.5 1 13 868 880 868 888 0.78 23 27 0.11 9 7.7 0.4 2 23 900 922 900 922 0.93 24 27 0.00014 0.011 16.8 2.2 1 23 929 952 929 952 0.98 25 27 0.0054 0.45 11.8 5.8 1 23 958 980 958 980 0.98 26 27 3.5e-07 2.9e-05 25.0 1.1 1 23 986 1008 986 1008 0.99 27 27 0.11 9.3 7.6 7.0 1 23 1014 1037 1014 1037 0.94
Sequence Information
- Coding Sequence
- ATGCGCGAGGAACTGAAGAAACACCGATCAAATCTACAAGAAATTCTTACTTACTCTAATGCTACGCCTTTTCTTGGAATAAATTATCGAGGTTATATGTGTTGCTACTGTGATACACAGTATCCAGAACCTGCAGATCTGAAGAAGCATATTCGGGACAATCATCGGCGCTTGTACAGTTCTTTAACTCCAATTGAAAAGATTACCAGAAAAGATGAGTTTTGTGTCAAGCTGGACTTAACGGATTTACGATGCACACTCTGCGATGCTGACATAGATACTTTAGAAAACTTGTTAAAACATCTAAAGAGTGAACACGAAAGGGGAATACACATGGACATTAAAAACCAATTCTTACCATTTAAGTTCAGCAGTGAAGTCCTAAAATGTTGTTTGTGCCcaaatgtttttgaaaagtttaaaattttacaattgCATATGCACACTCACTATAGAAATTTTATTTGCGAAGTGTGTGATATGGGTTACATTACTGGCGGTTGTCTCAAAAGGCACGCCCAGACACACATAACAGGCGAGTTTAAATGTAGTCACTGCTCCAAAACCTATGATACTATGAGAAAGGTAAAAAGTCACGAAGCTGCCGTACACGTCCACAAGTATCTAAGAAATAAGTGTTGGTACTGCAATGAGAAGTTTAAAAATCATCAGAAGAGGAATGATCATGTGGTTGAAGTGCATGGGGTGCAAAGTAACCTGATTAAATGTCGTGCTTGCGATAAGACCTTTACTTGCAAAAGTTCTCTGACTATTCATATTAAGAGGGATCATTTGATTGAGCGTATCATCAAATTAAAGAAAGAACCTGAACCAAAACCAAATAAACCGACAGCCAAGCCAAAGACGCCCGCTGGCAAAACAAAGCCGTCTGTAAGAGAAGAACTCGAAAAGCAATCAAATAACACGCAAATGATTCTAATGTGCAGCAATGCGACTCCTTTCCTTCAAAAGATAGATACGGGGTACGTCTGTTGTTATTGCAGGGAACAATACCCGGACCCTGCTGATCTAAAGAAGCATAACCACGAAATTCATGGAGACAAATATGACCCAGTATCTCCAAACGTTATTATGAACAGCAGGAAATCTGAATTCTGCATCAAATTAGACATTACAGGCTTACAATGTAAACTCTGCAGCACAGACATTCCGTCTTTAGAAGCACTTAAAGATCATCTCCAAAATGAgcacaaaaaaaagatatttacgGATATTAAGAATAAGATCATACCATTCAAGTTCGAAAGTGAAGATATCCGCTGCTGCATGTGTTCCAACGTATTCGAAAAGTTTCGGAAATTACAGGAACATATGCATTCACATTATAGGAACTTTGTTTGCGAGCAGTGTGATCTAGGATTCGTGACTCTATTAAGTCTAAAAAGTCATGCAGAAAAACACAAATTAGGCGAATTCAAATGCCAGTATTGCCCCAAGATATATGATACATATCGAAAGAAAAAGTCGCACGAAAAAGCAGTACATGTAACGGGATATTTGTTGAGCAGATGCGGGTACTGCAACGAACGATTCACGAGTACCAAAAACAAGGATGAACATTTGGCCAAAGTTCACGGGGTTCAGTTACGTACACTCAAATGCCAAGCATGCGACAGAACATTTGAGAACAAAAGAGCTTTGACTATACACACGAGGAGAGATCACTTGATGGAAAGAAAACATAAATGCTCGCAATGCGAAATGTCATTCTTCAACGCTAGTAGCTTAAAAATGCACGCAGTCAAGCATTCAGGCTTGAAAGAGTTTCAATGTGATGTATGCCAGAAGTCTTACGCTCAAAGGAAGACTTTGACGCAGCATATGAGGACACATTCAGATGAGAGACGCTTCAAGTGTGAACGCTGCGAGCAGGCATTCGTGAAGAAGAGTAGTTTGAATACACATATGAAGAGTAACCAAGAAACAGTGAGCAAGAAAGTTGAAAACAAACCTATAGAGCCAGCTGTTTTAGTTATCGTAGGACCTGAAAGGAAAACCAAATTGCAGGTAAATACTACTCCCAAACGGCACGTCGAACCGCATGTCAGTGAGTTGGGAAAACATCGCCACAACCTCGGACAAATCTTACAGTGTTCTAACGCAACACCAATAATGCGTCGCGGAGGCGTTGGATACATGTGCAGTTACTGTTTTCAAGAGTTCCCAGAGCCTGAACACCTAAAAAAGCATACACTTGCAAATCACACGTCTAAAACAGACCCTACAATTAGGTACGCTAAAAGCCCAGGCATATCAGAATATAATGTCAAAATAGACATCACAAACCTCGAGTGCACGGAATGTGCTAAAGCCATAGACAGTCTAGATGATCTATTGACCCATCTGCAAGATGAgcataaaaaaatgatatacaCTGACATTCCAAATCATTTCATTCCGTTCAAATTTCTAACAGATGATCTTACTTGCTGCTTATGTCAGAGTACTTTCGACAAGTTTAAAAAACTTCAAGAGCATATGCACTCACACTACAGGAACTACGTATGCGAAGAATGCGATTCTGGGTTCGTTACTCGGGGATGTTGGATCAGACATCGCAGCACTCACTTAAAAGGAGACTTCCCTTGCAGCTTCTGTCCAAAGGTCTACGACACAATGTTGAAGAAGCGGTCTCATGAGAGATGCAGCCATATTCACGCCGATATGCTTCCCAATAGATGCGCATTCTGCAACAAAGGCTTCAAAGAGTACTATGATAAGGAAATCCACATGTCTGAAGTCCACGGTGCTAAAGCATCACTGTACAAATGTAATGCTTGCGACAGGAGTTATAAAAGCAAGCGTAAACTAAGGATCCACGTCAAAAGAGACCATCTATTAGAGAGGAGGCACAAATGCCTGACTTGTGACATGAAGTTCTTTTCTTCACATGATGTAAAGAAGCATATGATCACTCACACGGGGGAAAGGAACTTTCAATGCGAAATTTGTCTGAAATCTTTTGGGAGAAAATCTACTCTTCAAAGTCATATGAGAATCCATAACAATGATCGACGATTTAAATGTGAATTCTGTGGGATGTCGTTTATTCAAAAGTGTAGCTGGAAAAGCCATTGTAAGACGACACATGGACAGATAGTTTGA
- Protein Sequence
- MREELKKHRSNLQEILTYSNATPFLGINYRGYMCCYCDTQYPEPADLKKHIRDNHRRLYSSLTPIEKITRKDEFCVKLDLTDLRCTLCDADIDTLENLLKHLKSEHERGIHMDIKNQFLPFKFSSEVLKCCLCPNVFEKFKILQLHMHTHYRNFICEVCDMGYITGGCLKRHAQTHITGEFKCSHCSKTYDTMRKVKSHEAAVHVHKYLRNKCWYCNEKFKNHQKRNDHVVEVHGVQSNLIKCRACDKTFTCKSSLTIHIKRDHLIERIIKLKKEPEPKPNKPTAKPKTPAGKTKPSVREELEKQSNNTQMILMCSNATPFLQKIDTGYVCCYCREQYPDPADLKKHNHEIHGDKYDPVSPNVIMNSRKSEFCIKLDITGLQCKLCSTDIPSLEALKDHLQNEHKKKIFTDIKNKIIPFKFESEDIRCCMCSNVFEKFRKLQEHMHSHYRNFVCEQCDLGFVTLLSLKSHAEKHKLGEFKCQYCPKIYDTYRKKKSHEKAVHVTGYLLSRCGYCNERFTSTKNKDEHLAKVHGVQLRTLKCQACDRTFENKRALTIHTRRDHLMERKHKCSQCEMSFFNASSLKMHAVKHSGLKEFQCDVCQKSYAQRKTLTQHMRTHSDERRFKCERCEQAFVKKSSLNTHMKSNQETVSKKVENKPIEPAVLVIVGPERKTKLQVNTTPKRHVEPHVSELGKHRHNLGQILQCSNATPIMRRGGVGYMCSYCFQEFPEPEHLKKHTLANHTSKTDPTIRYAKSPGISEYNVKIDITNLECTECAKAIDSLDDLLTHLQDEHKKMIYTDIPNHFIPFKFLTDDLTCCLCQSTFDKFKKLQEHMHSHYRNYVCEECDSGFVTRGCWIRHRSTHLKGDFPCSFCPKVYDTMLKKRSHERCSHIHADMLPNRCAFCNKGFKEYYDKEIHMSEVHGAKASLYKCNACDRSYKSKRKLRIHVKRDHLLERRHKCLTCDMKFFSSHDVKKHMITHTGERNFQCEICLKSFGRKSTLQSHMRIHNNDRRFKCEFCGMSFIQKCSWKSHCKTTHGQIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01063052;
- 90% Identity
- -
- 80% Identity
- -