Nfim005901.1
Basic Information
- Insect
- Noctua fimbriata
- Gene Symbol
- -
- Assembly
- GCA_905163415.1
- Location
- LR990924.1:3580712-3582316[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4e-09 6.4e-06 26.7 0.1 3 40 33 70 31 75 0.91 2 3 1.2e-12 1.9e-09 38.0 0.0 1 38 130 167 130 174 0.90 3 3 4.8 7.6e+03 -2.3 0.0 33 44 237 248 237 248 0.83
Sequence Information
- Coding Sequence
- ATGAGAGGATGTCCGGTCCTTAATTGTTACGGTGGTATATCTACCGGGTCTAGGAAATCGGATTTAAAGAGTGGAAAACGAGCTCTGTGGACGGTAGAAGACTTAAGGGCTGCTGTGGCAGCTACTAGAAGTAGAGAAATGACACAAACAGTTGCAGCAGAGCGTTATGGAATACCTCTACGGACTCTCAGCGATCATTTGAGAAAGGGGAGCTTAGTGAAACGTACAGGACGAGTAACAACATTCAACGAAGAACAAGAAAGACCGCTTTCTTTATCAAGCTCGATACTGCCTAGCGAGAGTCCACCAGTCGTTGTGACTGCAGGCTGCGGCCACAACGACTTAGCTTTAGATTTGATTGAATTGCCTCCAAGGAGAGTAAAATGGTCGGAGGAAGATATGCAAGGGGCAATAGCGGCTGTAATTCACGGTAACATGACACAGTGCGCTGCAGCAGAACTATTTGGCATTCCCAGACCAACACTAGCTGATCACCTGTCGAAAGGAAACATCGGGAAACGTGTGGGTCGCCATTCTATAATGAACGAAACTCATGAAAAGTTCCTCGTCAGCAAACTAATAGAGCTAGCTAACAGTGGAGCGCCGGTCACTCCACATGTAATCTGCAAGCAAGCATTCCTATTTTGcgaaaagtttaaattaaagcataattttaataatgaaactAGGCTCGCCGGGAAGAAATGGCTTAAGAGGTTCTTGAAACGACACCCTGAGGTCTCGCATTGTTTTTCTTGA
- Protein Sequence
- MRGCPVLNCYGGISTGSRKSDLKSGKRALWTVEDLRAAVAATRSREMTQTVAAERYGIPLRTLSDHLRKGSLVKRTGRVTTFNEEQERPLSLSSSILPSESPPVVVTAGCGHNDLALDLIELPPRRVKWSEEDMQGAIAAVIHGNMTQCAAAELFGIPRPTLADHLSKGNIGKRVGRHSIMNETHEKFLVSKLIELANSGAPVTPHVICKQAFLFCEKFKLKHNFNNETRLAGKKWLKRFLKRHPEVSHCFS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00711748;
- 90% Identity
- -
- 80% Identity
- -