Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.049 31 5.5 0.1 1 15 14 28 14 30 0.93

2 3 1.6e-06 0.001 19.9 0.3 3 41 44 82 42 86 0.91

3 3 1.2e-11 7.3e-09 36.4 0.0 1 37 153 189 153 197 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.049	31	5.5	0.1	1	15	14	28	14	30	0.93
2	3	1.6e-06	0.001	19.9	0.3	3	41	44	82	42	86	0.91
3	3	1.2e-11	7.3e-09	36.4	0.0	1	37	153	189	153	197	0.88

Coding Sequence: ATGAAATGGGCTTTGAAGCATCCACGAGGTGTTTTGTGGACAGAGGAAGACTTACGTGCTGCTGTGGCCGCTGTTAAAAGCGGACGATCTAGGAAATCGGGTTTAAAGAGTGGAAAACGGCGGAAGGTAGAAGATTTAAGGGCTGCTATGGCAGCTGCTAGAAGTAGAGAAATGACACAAACAGCTGCAGCAGAGCGTTATGGAATACCTCTACGGACTGTCAGCGATCATTTGAGAACGAAGAGCTTAGTGAAACGCACAGGAAGAGTAACAATATTCAACGAAGAACAAGAGAATAATCTCGTGAAAAGGATACTTAGGCTTTCAAAAAGACTGCTTTCTTTATCAAGCCCGATACTACCTAGCGAGAGTCATCCAGTCGTTGTGACTGCAGGCCGCGGCCACAACGACTTACCTTTAGATGGGATTGAATTGCCTCCAAGGAGAGTAAAATGGACGGAAGAAGATATGCGCGGGGCAATAGATGCAGTAATTCACGGTAACATGACACAGTGCGCTGCAGCAGAACTGTTTGGCATTCCCAGACCAACACTAGCTGATCACCTGACTAAAGGAAACATCGGGAAACGTGTGGGTCGCCATTCTATAATGAACGAAACTCATGAAAAGTTCCTCGTCAGCAAACTTATAGAGCTAGCTAACAGTGGAACGCCAGTCACTCCACATGTTATCTGCAAGCAAGCATTCCTGTTTTGCGAGAAGTTTAAATTAAAGCATAATTTTAATAACGAAACTAGGCTCGCCGGGAAGAAATGGCTCAAGAGGTTCTTGAAACGACACCCTGAGGTTTCGCATTGTTTTTCTTGA
Protein Sequence: MKWALKHPRGVLWTEEDLRAAVAAVKSGRSRKSGLKSGKRRKVEDLRAAMAAARSREMTQTAAAERYGIPLRTVSDHLRTKSLVKRTGRVTIFNEEQENNLVKRILRLSKRLLSLSSPILPSESHPVVVTAGRGHNDLPLDGIELPPRRVKWTEEDMRGAIDAVIHGNMTQCAAAELFGIPRPTLADHLTKGNIGKRVGRHSIMNETHEKFLVSKLIELANSGTPVTPHVICKQAFLFCEKFKLKHNFNNETRLAGKKWLKRFLKRHPEVSHCFS

Sequence clustering based on sequence similarity using MMseqs2