Ncom000300.2
Basic Information
- Insect
- Noctua comes
- Gene Symbol
- ttk
- Assembly
- GCA_963082995.1
- Location
- OY720266.1:3181142-3189515[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.7e-16 4.7e-13 49.3 0.0 1 42 328 370 328 373 0.94
Sequence Information
- Coding Sequence
- ATGTCGCAACAGTACAGCTTGCGGTGGAACAACCACCAGCCCAATTTCATCTCGATGTTCACCACACTGCTGAACACCCAGACGCTGGTGGACGTCACGTTGTCTGCGGACGGCAAGCAGCTACTCGCGCACAAAGTGGTGTTGTCTGCGTGCAGTACCTATTTCCATTCTCTGTTTGTGGAACACCCGGCGGCACATCCGATCGTGATCTTGAAGGATGTCACTTACGCCGATCTTCGCACCATGGTCGACTTTATGTACTGTGGGGAGGTGAACGTGACTGAGGAGCAGTTGCCTCAGGTTCTGGATACCGCAAAGCTTCTGAAGATCAAGGGTCTGACGGAGATGCCGGACTCCACGTCCCTGACACGCTCGCAGCGTACGTCCGCGGAGTTCCAGAACCAGGCCGACTCGATGGACTCGTCGCGGCACTCCCCCGCCGCGTCGCCTTCTAACAAGCGCCGGAGGCGCCGAAAAAGTTCAACGGGCTCGACGCAACTGAACGTGCTCGAAAACGAGCAAGGCCGCGCGGACGTGGGCGCTCAGACCGTAGACGCGATCACTCTGAGCAGCGTCCCGCAGCAACAGCGGCGCGTGCGCGAATACCACGAGATCCGGACCATCGACAACTCCCAGCAGGTAGACGACACGAACGAACAGGACAACATGAACATGGACACCATTGCAGTAGATAATACGAACACGACCCCAGCAGCCATACCAAACCAAGGAGGACAGTGGACAATGATGGAGCACTCGTACCCGCGATACACGAAtgcgtgcgccggcgccgcgctGCAGCAGGAGCCAGGCATGTACATGAACAACGTGATCGAGCCGCACATGGACGCCGACCTGCACTATGCGCAGAGCCTGGGCGTAGCTGGCCCGTCGCCCGGCCCTTCGTGCCAGGACGTGCAGGCCGCCGCCGAGCCGCCGCCCCCCGCGCCCCCCAAGCGCCGCCGCACGACCAACCCGCAGTCCGAGGAGAACTTCCAACGTGCGCTCGAGGCCGTGCGCTTCGGCGGCATCGGCTTCTGCAAGGCGGCGCGCATGTTCGGCGTAAACAACCGCACGCTCTGGCTCGAGTACAAGAAGAAAGGCTACCCCAACAACCGGCCCAGCATCAAGAGCAGGATCAAGCGCGAGCACACGACGCCGCCGCCCGAGCACAAGGACGAGCCAGCGCCGCCCCCGCAGCAGATGGCGCTACTGTGCCCGCAGCACCAGCTGCCGCCCGGTTTCCTGGAGCCCGGCGCGCCACACGGCTTCCCGCTGCAGAGTGTGGCGCATAATTCGCCCCTCAACCTCCTCGGCGTGAACTTTAACTCGATGCAATAG
- Protein Sequence
- MSQQYSLRWNNHQPNFISMFTTLLNTQTLVDVTLSADGKQLLAHKVVLSACSTYFHSLFVEHPAAHPIVILKDVTYADLRTMVDFMYCGEVNVTEEQLPQVLDTAKLLKIKGLTEMPDSTSLTRSQRTSAEFQNQADSMDSSRHSPAASPSNKRRRRRKSSTGSTQLNVLENEQGRADVGAQTVDAITLSSVPQQQRRVREYHEIRTIDNSQQVDDTNEQDNMNMDTIAVDNTNTTPAAIPNQGGQWTMMEHSYPRYTNACAGAALQQEPGMYMNNVIEPHMDADLHYAQSLGVAGPSPGPSCQDVQAAAEPPPPAPPKRRRTTNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHTTPPPEHKDEPAPPPQQMALLCPQHQLPPGFLEPGAPHGFPLQSVAHNSPLNLLGVNFNSMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01361512;
- 90% Identity
- iTF_00446358;
- 80% Identity
- iTF_01063690;