Nfla022339.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986045.1:63021168-63022283[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0077 29 5.4 0.1 22 45 22 45 18 50 0.86 2 12 4.2e-06 0.016 15.9 0.1 21 45 50 74 47 79 0.90 3 12 0.021 80 4.0 0.0 21 45 79 103 75 107 0.87 4 12 0.0016 6 7.6 0.0 21 45 108 132 104 136 0.89 5 12 0.0001 0.39 11.4 0.0 21 45 137 161 133 166 0.90 6 12 0.0077 29 5.4 0.1 21 48 166 193 163 195 0.89 7 12 8.5e-05 0.32 11.7 0.0 21 45 195 219 192 223 0.90 8 12 0.0074 28 5.5 0.1 20 48 223 251 219 253 0.89 9 12 0.0038 14 6.4 0.1 21 48 253 280 250 282 0.90 10 12 0.0019 7.2 7.4 0.0 21 45 282 306 278 310 0.89 11 12 0.014 54 4.6 0.0 20 45 310 335 306 341 0.87 12 12 0.0028 11 6.8 0.1 21 48 340 367 336 370 0.92
Sequence Information
- Coding Sequence
- ATGAGTAGTGTTGtcaaaaaccataaaataaatGCGTTGAATATAAATGGGGTTCATAAAAATGAGCGGCATTTTAATTGTCTTATTTGTGAAGCTACGTTTACTCGTGCTGAGAATTTAAAACAGCATATAAGTGGGATTCATAAAAATGAGCGGCCCTTTAAGTGTCTTATTTGTAAAGCTACGTTTACAGAAGCTAGGAATTTAAAAAGGCATATAAGtggtgttcataaaaatgaaCGACCCTTTAAGTGTCTTATTTGTAAAGCTACGTTTACACGAACTGGGCATTTAAATCAGCATATAAGTGGGGTTCATAAAAATGAGCGGCCCTTTAAGTGTCTTATTTGTAAAGCTACGTTTACACAAGCTTGGTCTTTAAAAACGCATATAAGTGGGGTTCATAATAATGAGCGACCCTTTAAGTGTCTTATTTGTAAAGCTGCGTTTACACGAACTGGAAATTTAAAAAGGCATATAAGTGGGGTTCATAAAAATGAGCGACCCTTTAATTGTCTTATTTGTAAATCTGCGTTTACACAAGCTGGACATTTAAATCAGCATATAAGTGCGGTTCATAAAAATGAGCGGCCCTTTAAGTGTCTTATTTGTAAAGCTACGTTTACACAAGCTGGGGATTTAAAAAGGCATATAAGTGGGGTTCATAAAAATGAGCGACCCTTTAAGTGTCTTATTTGTAAATCTGCGTTTACACAAGCTGGGCATTTAAATCAGCATATAAGTGCGGTTCATAATAATGAGCGACCCTTTAAGTGTCTTGTTTGTAAATCTGCGTTTACACAAGCTGGGCATTTAAATCGGCATATAAGTGCGGTTCATAAAAATGAGCGACCTTTTAAGTGTCTTATTTGTAAAGCTACGTTTACACAAGCTGGGTCTTTAAAAATGCATATAAGTGGGGTTCATAAAAATGAGCGACCCTTTAAGTGTCTTATTTGTAAAGCTACGTTTACACGAGCTGGGTCTTTAAAAATGCATATAAGTGGGGTTCATAAAAAAGAACGTCCAATTAAATGTGTTGAATGTCCAGCAACATTTACAAATAGCggtaatttaaatcaacatatACGTAGTAAGCATAAAAATGAACACTAA
- Protein Sequence
- MSSVVKNHKINALNINGVHKNERHFNCLICEATFTRAENLKQHISGIHKNERPFKCLICKATFTEARNLKRHISGVHKNERPFKCLICKATFTRTGHLNQHISGVHKNERPFKCLICKATFTQAWSLKTHISGVHNNERPFKCLICKAAFTRTGNLKRHISGVHKNERPFNCLICKSAFTQAGHLNQHISAVHKNERPFKCLICKATFTQAGDLKRHISGVHKNERPFKCLICKSAFTQAGHLNQHISAVHNNERPFKCLVCKSAFTQAGHLNRHISAVHKNERPFKCLICKATFTQAGSLKMHISGVHKNERPFKCLICKATFTRAGSLKMHISGVHKKERPIKCVECPATFTNSGNLNQHIRSKHKNEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01060955;
- 90% Identity
- iTF_01060955;
- 80% Identity
- iTF_01060955;