Basic Information

Insect: Nineta flava
Gene Symbol: prdm10
Assembly: GCA_963920215.1
Location: OY986044.1:31238306-31250743[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.053 2 9.6 0.1 2 23 526 548 525 548 0.95

2 12 0.0021 0.077 14.0 0.6 1 23 623 645 623 645 0.97

3 12 0.0069 0.26 12.4 0.9 1 23 663 685 663 685 0.91

4 12 0.00011 0.0042 18.0 0.6 2 23 693 714 692 714 0.97

5 12 0.24 8.9 7.5 2.4 2 23 723 744 722 744 0.95

6 12 5.2 1.9e+02 3.3 1.0 1 23 749 771 749 771 0.79

7 12 0.0021 0.079 14.0 2.5 1 23 777 800 777 800 0.96

8 12 0.011 0.4 11.8 2.1 1 23 805 827 805 827 0.96

9 12 0.00017 0.0063 17.5 2.5 1 23 833 856 833 856 0.94

10 12 0.041 1.5 9.9 1.8 1 23 898 921 898 921 0.97

11 12 0.00068 0.025 15.6 2.2 1 23 943 966 943 966 0.97

12 12 0.02 0.76 10.9 5.0 1 23 1002 1025 1002 1025 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.053	2	9.6	0.1	2	23	526	548	525	548	0.95
2	12	0.0021	0.077	14.0	0.6	1	23	623	645	623	645	0.97
3	12	0.0069	0.26	12.4	0.9	1	23	663	685	663	685	0.91
4	12	0.00011	0.0042	18.0	0.6	2	23	693	714	692	714	0.97
5	12	0.24	8.9	7.5	2.4	2	23	723	744	722	744	0.95
6	12	5.2	1.9e+02	3.3	1.0	1	23	749	771	749	771	0.79
7	12	0.0021	0.079	14.0	2.5	1	23	777	800	777	800	0.96
8	12	0.011	0.4	11.8	2.1	1	23	805	827	805	827	0.96
9	12	0.00017	0.0063	17.5	2.5	1	23	833	856	833	856	0.94
10	12	0.041	1.5	9.9	1.8	1	23	898	921	898	921	0.97
11	12	0.00068	0.025	15.6	2.2	1	23	943	966	943	966	0.97
12	12	0.02	0.76	10.9	5.0	1	23	1002	1025	1002	1025	0.95

Sequence Information

Coding Sequence: atggaGAGTGGAAGTCCAGGAAATGAAACTGCTACAAAACCATTAATACATTCTGGTGAAATATGGCCTTCTTCAGACCCATCTTTAAGAACGAACGTTACTGAAACACAAGATTCAACAAACAACTCACAATTTTTGTTCATtgctGTCGAGTATGTTAATGATGGAAATGTGGACTACAGTAACATGAACACGACACCAGCCTTTACTCCAAATCAAGAATATTCTGAATTAAATGATCATTTAAATCCCTTAGATTCAACATTAAATTCACAAAATGAGTATtctttcataaataatgaatcacatttaaataattcaacaacttttaatcaaaattcaattgtaattttaccaAATAATCCAGAACATCAAAATGGATATTCCTTAAATTCCGTGGATGGTAACATGGATTTATTACGACAGGTGGTAACCAATCGATTATGTCGACAAATTGAAAACAGTATTGATTTAAAGCAAGAAAATGATGCTGTTGAATTGTTAATTACAAATCAAAATACCGGCTTATCCTATTCCTTGAATTCAGAAACAACGAATATACCAAAACAAAATGAtgttatgttaaataatttagatGCAAATAATGGAGATCAAATTTTAGATTCTCAAGGTCTTGTATTAGATTCAAATCATTTGATATCGTTAGATGAACATGTTTTAATGGGCAATGGTACTTTAGTCTTAAAATCTGATTTAAATTCAGAATTAAATAGTGTTGTCCAACATATCGATTTGAATCATTTAGAAACAAATATTTCTCAAACCATTAATGACAATTATAAAGCAATTGAGGATTCTTATATAGCGGAACATATTGAGAACAAtgataatatttcaaatcaaaagACAGAAAAATCAACGAATTTTGAGCAACCAATGGAATTAAAAATTGAAGAGAATGATTACGTTAAAAATGAAGATGTTGCTGTCGAAGAAACACAACAAGTTAGACGTTCAAAACGTCATCAATACGACGGAAAAGAAttcgatgacgatgatgacagtGATTTGTttacAGATTGCCAAGATTGTATTATGGGAAGTTCTCTTCTTCTAATGTGCGACCGTCATCGAATGTTAAGCATTTCAGATAAACCCGTTCCTTCTAGGGCACGAGCAACACTTCCTGGagtttatttatcaattaataaagTTGGTGCTAATGAAAAAGGCGAAccaaTTTTTGGAGTATTTAGTCgtaaatttataccaaaacgAACACAATTTGGACCAATTGAAGGTgttgtagtaaaaaattcaaCTTCAGACGCGCaaagttataataatattgaattaattttggagAATGAATCTGAAGAAATGCATAAAATAGATACTAGCAATGAAgatttgtcAAATTGGATGCGTTTTGTACGTAAAGCTGAAAAATTTAAGGATCAAAATTTGGTTTTAAATCAAATGGGACcttctttatattatatttctactTGTAATATTCTTCCCCGTCAAGAATTATTGGTTGGATATAGTGCTGTATATGCGGAAAAAAGAGGCCTAACTGTGTTGCCAAATGAGCCTAATGAAGAAGAATGGCCATGCTTTGAATGTGATTCAATTTTTGTATCTTTCGATGAGTTAGACAAACATTTAAACAGTGTACATGGAAGTGAAAATAGTGCAGAAAAACGATTGTCAAGAATGAAACGTAGTAAGAAAAAACGTTCGGAATTagttacaaaaaaagtttctaaagaAAAGTTGCCGTGGGCATGGCAAGATAATTCATCAAAATCTGTTAATATCATTGAGTCAGATATTAATGGGATTGTATCGTCTACGGAAAAAGATCCATTGTCTGAAAAAGAAAATGAGGAAAAagttTTCTATACTTGTAAGGATTGTAAAAAAGTATTTgaactttcaatattattagAGATACATAGTTATACACATAATTCAAAAGGTATTGTTGATACGTCGGTAACATCATCGTCAGATGAACAGCATATATGTCCAGAATGTGATGTAATATTTTCATCAAGGAGTAACTTAGCATGCCATGTAAATGACCATCAAGTTCGTACAGCGAAAatcaaatgtaatatatgttaCAAATCATTTGCTTCCAAAGAACGTGTCCAAcGACATATGTTAGTTCATGGTCCACAAAAACTCAAACCATTACAGTGTAATATGTGTACAAAACGATTTTTAAACAATTCTGCGCTAACATGTCATATTAAAGCTCATTCAAAAATTACGTTTGAATGCCCTATTTGCAAAGAGGTTGTTGATCATGTTTTAAGCCACAAAGAGCATGTACGAAGTCATTGTCTCAATGGTGTTTACTCATGTCCTCATTGTAAAAAGgaatttaaagaatatagtGTTATTCGAAAACATATACGAGCATTTCATTGTGATCGTAAACATGCATGCTTATACTGTAACAAATTATTTCCAACTACCGATAAATTACGAatgcatttattaaaacattctgATCATAGAGAATTTCTATGTGCTACTTGTGGTAAACAATTTAAACGAAAAGATAAACTTAAAGAGCATACAAAACGTATGCATTCGGGTAAAGAAAAAAATGGTACACAAGTGATGGTTTTGATGGATAATAAACAAGATGAATCAAACCATACATCCAAGCGATTTATGCCGAAAGTTTCACCGACCGATTATcatcgatttatttataaatgtcacACATGTATGGTTGGATTCAAACGTCGTGGTATGTTGGTTAATCATTTAGCTAAACGGCATCCAGATATTCGACCAGATTCGGTTCCCGAATTGAACTTACCAATATTGAGAACCACACGTGattattattgtcaatattGTGAGAAAGTTTATAAAAGTAGCTCTAAGCGTAAAgctcatattttgaaaaatcatccAGGTTTAGAATTACCTTTAAGTCGATGCAAAGATGCAGCAGATATTTCAGGCATGTTAAATCCAACTTTTTCACAAACGGTTGGCAGTGTTACAACAAATCCCCATAATTGCCAATGGTGCCATAAACAATATGCAAGTAAAGCGAAATTATTACAACACCAACGCAATAAACATCCAGAGTTGTTGAGTAAtgagtcaaaatgtaatttacgaGTGTCTACTTCTGAGGATTTGCCAGATCCGTTACTTATAGGAACAACTGATGATGGTATCAATAGTATGAAATCCAACAAAACACATGTAATTGAAaatgataataacaaaaattcagaAACTGGAAATAAAAACTCCACAGATGATATAGCatcggaatttttaaatactgatGGGTTTGATACAACGGGTATTTTATTGAATTCTAAAGATAAGATTGAAGAACAATTTTCTCGAGAAACGTTAACTGAAACGGGTAATAATATTCATGGTGAATTTCGTATTTCACAAAATGGTCAATGTTATCGTTTGGTGCCAGTATCAAGTGATCAAGATTCTGTAATTCCTGTTGGTGATTCTGTATTACGTGCATTGTTAACTACAACTACGCCAGTTATGAATAGAGGTTGGTCTGAAACCACACCTTTCACATCATATATTCCACCAcgttga
Protein Sequence: MESGSPGNETATKPLIHSGEIWPSSDPSLRTNVTETQDSTNNSQFLFIAVEYVNDGNVDYSNMNTTPAFTPNQEYSELNDHLNPLDSTLNSQNEYSFINNESHLNNSTTFNQNSIVILPNNPEHQNGYSLNSVDGNMDLLRQVVTNRLCRQIENSIDLKQENDAVELLITNQNTGLSYSLNSETTNIPKQNDVMLNNLDANNGDQILDSQGLVLDSNHLISLDEHVLMGNGTLVLKSDLNSELNSVVQHIDLNHLETNISQTINDNYKAIEDSYIAEHIENNDNISNQKTEKSTNFEQPMELKIEENDYVKNEDVAVEETQQVRRSKRHQYDGKEFDDDDDSDLFTDCQDCIMGSSLLLMCDRHRMLSISDKPVPSRARATLPGVYLSINKVGANEKGEPIFGVFSRKFIPKRTQFGPIEGVVVKNSTSDAQSYNNIELILENESEEMHKIDTSNEDLSNWMRFVRKAEKFKDQNLVLNQMGPSLYYISTCNILPRQELLVGYSAVYAEKRGLTVLPNEPNEEEWPCFECDSIFVSFDELDKHLNSVHGSENSAEKRLSRMKRSKKKRSELVTKKVSKEKLPWAWQDNSSKSVNIIESDINGIVSSTEKDPLSEKENEEKVFYTCKDCKKVFELSILLEIHSYTHNSKGIVDTSVTSSSDEQHICPECDVIFSSRSNLACHVNDHQVRTAKIKCNICYKSFASKERVQRHMLVHGPQKLKPLQCNMCTKRFLNNSALTCHIKAHSKITFECPICKEVVDHVLSHKEHVRSHCLNGVYSCPHCKKEFKEYSVIRKHIRAFHCDRKHACLYCNKLFPTTDKLRMHLLKHSDHREFLCATCGKQFKRKDKLKEHTKRMHSGKEKNGTQVMVLMDNKQDESNHTSKRFMPKVSPTDYHRFIYKCHTCMVGFKRRGMLVNHLAKRHPDIRPDSVPELNLPILRTTRDYYCQYCEKVYKSSSKRKAHILKNHPGLELPLSRCKDAADISGMLNPTFSQTVGSVTTNPHNCQWCHKQYASKAKLLQHQRNKHPELLSNESKCNLRVSTSEDLPDPLLIGTTDDGINSMKSNKTHVIENDNNKNSETGNKNSTDDIASEFLNTDGFDTTGILLNSKDKIEEQFSRETLTETGNNIHGEFRISQNGQCYRLVPVSSDQDSVIPVGDSVLRALLTTTTPVMNRGWSETTPFTSYIPPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00333397;
90% Identity: iTF_00333397;
80% Identity: -