Basic Information

Insect: Chrysoperla carnea
Gene Symbol: prdm10
Assembly: GCA_905475395.1
Location: FR997754.1:44072729-44081126[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.094 2 9.4 0.1 2 23 525 547 524 547 0.94

2 12 0.009 0.19 12.6 0.2 1 23 621 643 621 643 0.94

3 12 0.00025 0.0053 17.5 0.2 1 23 661 683 661 683 0.95

4 12 0.00017 0.0037 18.0 0.6 2 23 691 712 690 712 0.97

5 12 0.37 7.9 7.5 2.4 2 23 721 742 720 742 0.95

6 12 7.9 1.7e+02 3.3 1.0 1 23 747 769 747 769 0.79

7 12 0.0033 0.071 14.0 2.5 1 23 775 798 775 798 0.96

8 12 0.016 0.36 11.8 2.1 1 23 803 825 803 825 0.96

9 12 8.7e-05 0.0019 18.9 1.9 1 23 831 854 831 854 0.94

10 12 0.063 1.4 9.9 1.8 1 23 897 920 897 920 0.97

11 12 0.001 0.022 15.6 2.2 1 23 942 965 942 965 0.97

12 12 0.031 0.67 10.9 5.0 1 23 1001 1024 1001 1024 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.094	2	9.4	0.1	2	23	525	547	524	547	0.94
2	12	0.009	0.19	12.6	0.2	1	23	621	643	621	643	0.94
3	12	0.00025	0.0053	17.5	0.2	1	23	661	683	661	683	0.95
4	12	0.00017	0.0037	18.0	0.6	2	23	691	712	690	712	0.97
5	12	0.37	7.9	7.5	2.4	2	23	721	742	720	742	0.95
6	12	7.9	1.7e+02	3.3	1.0	1	23	747	769	747	769	0.79
7	12	0.0033	0.071	14.0	2.5	1	23	775	798	775	798	0.96
8	12	0.016	0.36	11.8	2.1	1	23	803	825	803	825	0.96
9	12	8.7e-05	0.0019	18.9	1.9	1	23	831	854	831	854	0.94
10	12	0.063	1.4	9.9	1.8	1	23	897	920	897	920	0.97
11	12	0.001	0.022	15.6	2.2	1	23	942	965	942	965	0.97
12	12	0.031	0.67	10.9	5.0	1	23	1001	1024	1001	1024	0.95

Sequence Information

Coding Sequence: ATGGAGAGTGGAAGTCCGGGAAATGAAACTGCTACAAAGCCGCTAATACATCCTGGAGGAATATGGTCTTCCTCGGATCCATCTTTAAGAACAAATGTTGCTGAAGCACACGATTCTACAAACAACTCACAATTTTTGTTTATTGCTGTCGAGTATGTTAATGATGGGCATGTTGATTACAGCAACATAAATACGGCTCCAAACTTTACACCAAATCAAGAATTTTCTGAATTAAGTGATCACTTAAACCCCTTAGATTCAACATTAAATACACAAAATGAATATTCTTTCATAAACAACGAATCACATTTAAATAATTCAACAACTTTTAATCAAAATTCAATTGTAATTTTACCAAATAACTCGGAACAACAAAATGGATTTTCTTTAAATTCCGTGGATGGTAATATGGATTTATTACGACAAGTTGTGACCAACAGATTATGTCGACAAATTGAAAACAGTATTGATTTAAAACAAGAAAGTGATTCTGTTGAATTATTAATTACAAATCAAAATGCTGGCTTATCCTACTCCTTAAATTCAGATACAACGAATATACCAAAACAAAATGATATTATGTTAAATAATTTAGATACGAATAACAGTGATCGAATTTTAGAATCTGAAGGTCTAGTTTTAGATTCCAATCATTTAATATCGTTAGATGAACACGTTTTAATGGATAATGGTACTTTAGTTTTGAAATCTGATTTAAATTCAGAATTAAATAATGTAGTTCAACACATTGATTTGAATCATTTGGAGACAAATATTTCTCAAACTATTGATGAAAATTATAAAGCAATTGAAGATTCGTATATGGAGGAACATATTGAAAATAATGAGGAAGTTCCAAATGAAAACACAGAAAAAACAACGAATTTTGAACAACCTATGGAATTAAAAATTGAAGAGAATGATTATGTTAAAAATGAAGAAGTCGCTGCAGAAGAAACACAAGTTAGACGTTCAAAACGTCATCAGTATGATGGCAAAGAATTCGATGACGATGACGATGGTGACTTATTTACAGATTGCCAAGATTGTATTATGGGAAGTTCTCTTATTTTGATGTGTGATCGTCATCGAATGCTAAGTATTTCGGATAAACCGGTGCCTTCTAGAGCACGAGCAACACTTCCAGGAGTTTATTTATCAATAAATAAAGTTGGTACAAATGAAAAAGGCGAACCAATTTTTGGAGTATTTAGCCGTAAATTTATACCTAAACGAACACAGTTCGGCCCAATTGAAGGAGTGGTTTCTAAATATTCAACTACGGACGTGCAGAGCTACAATAATATTGAATTAATTTTAGAAAATGAATCTGGAGAAATGCATAAAATGGATACGAGCAATGAAGATCTGTCAAATTGGATGCGTTTTGTACGCAAAGCTGAAAAGTTTAAGGAGCAAAATTTGGTGTTAAATCAAATGGGACCATCTCTATATTATATTTCTACTTGTAATATTCTTCCCCGTCAAGAATTAATGGTTGGTTATAGTGCTGTGTATGCGGAAAAAAGAAGCCTACCCGTGTTAACAAATGAGCCTAATGAAGAAGACTGGCCATGCTTTGAATGTGATTCAATGTTTGTATCTTTTGATGAATTAGATAAACATTTGAGCAGCGTTCATGGAAGTGAAAATAGTGCAGAAAAACGTATATCAAGAATGAAACGTAGTAAGAAAAAACGTTTGGAATTAAACACGAAAAAAGTTTCCAAAGAAAAATCATGGACATGGCAAGATAATTCATCAAAATCTGTTAAAAACGTAGATTCAGATAATAACGGGATTGTATCTTCTACGGAAAAGGATCCGTTATCTGAAAAAGAAAATGAGGAAAAAATTTTCTACACCTGCAAGGATTGTAAAAAGGTTTTTGAACTTGCAATATTATTAGAAATACATAGTTATATACACACCTCTAAAGGTGTTGTTGATTCATCGGTGACATCATCGTCAGATGAACAACATATATGTCCAGAATGCGATGTAATATTTTCATCGAGAAGTAACTTAGCATACCATGTTAACGATCATCAAGTTCGTACAGCGAAAATCAAATGTAATATATGTTATAAATCGTTTGCTTCCAAAGAACGTGTCCAACGACATATGCTAGTACATGGTCCACAAAAACTGAAACCATTACAATGCAATATGTGTACAAAACGATTTTTAAACAATTCTGCGCTAACTTGTCATATTAAAGCACATTCTAAAATTACATTTGAATGTCCCATTTGTAAAGAGGTTGTTGATCACGTTTTAAGCCACAAAGAACATGTGCGAAGTCATTGTCTCAATGGTGTTTATTCATGTCCTCATTGTAAAAAGGAATTTAAAGAATACAGTGTTATTCGTAAACACATAAGAGCATTTCATTGTGATCGTAAACATGCATGCTTATACTGTAACAAATTATTTCCAACTACCGATAAATTACGAATGCATTTATTAAAACATTCAGACCACAGAGAATTTTTATGTGCTGAATGTGGCAAACAATTTAAACGAAAAGACAAACTTAAAGAGCACACAAAACGTATGCATTCGGGTAAAGAAAAAAATGATACACAAGTTATGGTCCTAATGGATAATAAACAAGACGAAGCAAATCATACATCATCCAAACGTTTTATGCCGAAAGTTTCACCGACCGATTATCATCGATTTATTTATAAATGTCATACATGTATGGTTGGATTCAAACGTCGTGGAATGTTGGTTAATCATTTAGCTAAACGACATCCAGATATTCGACCAGATTCGGTCCCCGAATTGAATTTACCAATATTGAGAACCACACGTGATTATTATTGTCAATATTGTGAGAAAGTTTACAAAAGTAGTTCGAAGCGTAAAGCTCATATTTTAAAAAATCATCCCGGTTTGGAATTACCTTTAAGTCGGTGTAAAGATGCAGCAGATATTTCAGGCATGTTGAATCCAACTTTTTCACAAACTGTTGGTAGTGTTACAACAAATCCACATAATTGTCAATGGTGTCACAAACAATATGCGAGTAAAGCTAAATTATTGCAACATCAACGAAATAAACATTCTGATTTATTAAATAATGAGTCTAAAGGTAATTCACGAGTGTCGACTTCTGAAGATGTACCAGATCCAATACTTACTGGAAAAACTGCTGCTGGTAACACTAGTATGAATTCCGACAAAATAAATGTAATTGAAAATGAAAATAATAAAAATTTAGAAACAGAAAATAAAAATTCAACCAACGATATTCCTTCGGAGTTTTTAAATACTGATGGATTTGATACAACGGGTATTTTATTGAATTCTAAAGATAAGATTGATGAACAATTTTCTCGAGAAATGTTAACTGAAGCGGGAAACAATATTCATGGCGAATTTCGTATTTCACAAAATGGTCAATGTTATCGTTTGGTACCAGTATCCAATGATCAAGATTCTGTAATTCCTGTTGGTGATTCTGTACTACGCGCCTTGTTAACTACAACCACACCAGTTATGAATCGAGGTTGGTCTGATACTACACCTTTCACGTCATATATTCCACCACGTTGA
Protein Sequence: MESGSPGNETATKPLIHPGGIWSSSDPSLRTNVAEAHDSTNNSQFLFIAVEYVNDGHVDYSNINTAPNFTPNQEFSELSDHLNPLDSTLNTQNEYSFINNESHLNNSTTFNQNSIVILPNNSEQQNGFSLNSVDGNMDLLRQVVTNRLCRQIENSIDLKQESDSVELLITNQNAGLSYSLNSDTTNIPKQNDIMLNNLDTNNSDRILESEGLVLDSNHLISLDEHVLMDNGTLVLKSDLNSELNNVVQHIDLNHLETNISQTIDENYKAIEDSYMEEHIENNEEVPNENTEKTTNFEQPMELKIEENDYVKNEEVAAEETQVRRSKRHQYDGKEFDDDDDGDLFTDCQDCIMGSSLILMCDRHRMLSISDKPVPSRARATLPGVYLSINKVGTNEKGEPIFGVFSRKFIPKRTQFGPIEGVVSKYSTTDVQSYNNIELILENESGEMHKMDTSNEDLSNWMRFVRKAEKFKEQNLVLNQMGPSLYYISTCNILPRQELMVGYSAVYAEKRSLPVLTNEPNEEDWPCFECDSMFVSFDELDKHLSSVHGSENSAEKRISRMKRSKKKRLELNTKKVSKEKSWTWQDNSSKSVKNVDSDNNGIVSSTEKDPLSEKENEEKIFYTCKDCKKVFELAILLEIHSYIHTSKGVVDSSVTSSSDEQHICPECDVIFSSRSNLAYHVNDHQVRTAKIKCNICYKSFASKERVQRHMLVHGPQKLKPLQCNMCTKRFLNNSALTCHIKAHSKITFECPICKEVVDHVLSHKEHVRSHCLNGVYSCPHCKKEFKEYSVIRKHIRAFHCDRKHACLYCNKLFPTTDKLRMHLLKHSDHREFLCAECGKQFKRKDKLKEHTKRMHSGKEKNDTQVMVLMDNKQDEANHTSSKRFMPKVSPTDYHRFIYKCHTCMVGFKRRGMLVNHLAKRHPDIRPDSVPELNLPILRTTRDYYCQYCEKVYKSSSKRKAHILKNHPGLELPLSRCKDAADISGMLNPTFSQTVGSVTTNPHNCQWCHKQYASKAKLLQHQRNKHSDLLNNESKGNSRVSTSEDVPDPILTGKTAAGNTSMNSDKINVIENENNKNLETENKNSTNDIPSEFLNTDGFDTTGILLNSKDKIDEQFSREMLTEAGNNIHGEFRISQNGQCYRLVPVSNDQDSVIPVGDSVLRALLTTTTPVMNRGWSDTTPFTSYIPPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01061288;
90% Identity: iTF_01061288;
80% Identity: -