Basic Information

Insect: Nineta flava
Gene Symbol: PRDM11
Assembly: GCA_963920215.1
Location: OY986040.1:102840365-102856058[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 8.2 3e+02 2.7 0.7 2 23 233 254 232 254 0.95

2 13 0.039 1.5 10.0 4.1 1 23 263 286 263 286 0.98

3 13 0.00078 0.029 15.4 1.3 1 23 528 550 528 550 0.98

4 13 0.00012 0.0046 17.9 2.0 1 23 584 606 584 606 0.98

5 13 0.00062 0.023 15.7 1.0 2 20 612 630 611 632 0.94

6 13 0.024 0.88 10.7 2.5 1 23 643 666 643 666 0.97

7 13 0.00039 0.014 16.3 0.7 2 23 703 724 702 724 0.95

8 13 0.98 36 5.6 4.7 3 23 731 751 729 751 0.96

9 13 1.3e-05 0.00047 21.0 3.4 1 23 758 780 758 780 0.97

10 13 0.00043 0.016 16.2 5.2 1 23 787 810 787 810 0.95

11 13 0.00076 0.028 15.4 0.3 1 23 817 839 817 839 0.97

12 13 0.0019 0.07 14.2 1.6 2 23 852 874 851 874 0.94

13 13 0.027 1 10.5 2.1 1 23 879 902 879 902 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	8.2	3e+02	2.7	0.7	2	23	233	254	232	254	0.95
2	13	0.039	1.5	10.0	4.1	1	23	263	286	263	286	0.98
3	13	0.00078	0.029	15.4	1.3	1	23	528	550	528	550	0.98
4	13	0.00012	0.0046	17.9	2.0	1	23	584	606	584	606	0.98
5	13	0.00062	0.023	15.7	1.0	2	20	612	630	611	632	0.94
6	13	0.024	0.88	10.7	2.5	1	23	643	666	643	666	0.97
7	13	0.00039	0.014	16.3	0.7	2	23	703	724	702	724	0.95
8	13	0.98	36	5.6	4.7	3	23	731	751	729	751	0.96
9	13	1.3e-05	0.00047	21.0	3.4	1	23	758	780	758	780	0.97
10	13	0.00043	0.016	16.2	5.2	1	23	787	810	787	810	0.95
11	13	0.00076	0.028	15.4	0.3	1	23	817	839	817	839	0.97
12	13	0.0019	0.07	14.2	1.6	2	23	852	874	851	874	0.94
13	13	0.027	1	10.5	2.1	1	23	879	902	879	902	0.96

Sequence Information

Coding Sequence: ATgccaacaattattaatttggaaaatattgaaaatgatttaggtgcacaaataaataatactattgaatatataaataaaggTTGTACATTATGTGGAGGAGATAGTCATAAAATTGAAGAATGTAATATATTAACGAATATCAAGCATATTCATGATAAAAAAGTACCAACTAGAGCACGGCTCACATTACCTAGTGAGTTACGAGTCGAAACAATGTCTGATGGAACGTGTAATGTTGTTGCACAAGTGCCATTACCGAAAGGAACCAGATTTGGTCCTTTCGAAGCAAAAAAGATACAGATATTACATCCGTTAATTACATTTCctataaaagtatttaaaatggAAGAGAACGACACCGAATGTTATTTCGATCCAAGCAATGAAGATTTTGCAAATTGGATGTGTTTTGTTGCAGCTGCAAGTGACATTttggaacaaaatttaatttgttatcagatgaaaaatgatatatattattcagCAATACGTGatataaaaataggtgaatatttaaaagtatgGTATGCAGCATATTATGCTGAAAAAATGGGCACAGCAGTATTAAAAGGTGTTGAACCAGATCTACAAAATTATGCTGATGATATTAAAGTCGaaaaactTGTAAATCAGAAAGTGGCTGAAACATTACCAGCAGAGTGTTTGGGTGCAACAACTGATACCAGTATATGGGTGTGTCGATTTTGTAAaactacaattaaaaatattgtattattttcaacACATTTACAGCAACATTATAAAGATCTAGCATTAAAAACGTTCACTTGTACGATATGTTACAAACATTGTATATCGGAAAAAACATTATTAAGTCATCAAATAACAGTACACAAGTTAAATGCACATAAATTACCATTACCCCTAAAACACAGTGAGATCACTACATCAATTGTTGATACAACATCATCTTCATCATCCACAAACAACAATTCAATACAACATTTCTTTAGTAATAAAAAAGATGAAAGCACAGTTGTTGAATCAACCACTACAAGTGTAGTTACATCGCCAACATCAACTGACCAACAAATTAATACCAAcagtttatttacaaaaatcaatgtATATGACACAGATTTAGATTttagtacaaaaacaattgtTAATGATAGTTTAGTTGGTGGACAAACACAAGATCAACTTGATCAGAACACCTCATTATTGGATCAATCAACAAATGCGTTGTTAGTTGATAACATCACGTTAAATTATAATCATCATGatttaaataatgttatgttaacGAAAATCAGTGAATTAaatgaacatttaaaatttgatatcaaagatACTACCGTCTCTGGAAGCGATTTAAACGATAGTTTGAATACGGATTCATTACATGATATCTTATGTGAAGATGATTCCAAGGCAAGTAAAATTGCCCAAGAGAAGAGTATTGCGgattttagtttagattttgtTGAAAGTAatggtttaaatttaaatacatcatCTACTGATAATACATCAACCTTAAGTACAAATGATACAAATAGTAATACGAATAATACGACAACTCAAGATTTACCACCTCCGGAATCTGGACCAccttatttttgtgatatatgtcgaaaagaatttcaaaatattgaatatttaatacgTCATTTGAAAAAACATTGTGGTGAATTTACATGTATTGATTGTCTTGcggTATTTGGACGACgtgagaattttttaaatcattcatGTAAATGGgatccaaaaaagaaaaacacatatgaatgtatgtattgtTCGAAAGAATTCAgtgaacagaaatatttaaatcgtCATGTACAACGTCACAATAAACAACGTAAAACATGCCCGAAATGCGGTACGGTATTTGAAAATGAAAGTAGCTTAGAACATCATGTATGCGACACATCAAAACCGCTAGTGATCGAAAAGAAATTTGAATgtgatatatgtaaaaatagatatattaaaaattcttatttacgtggacatatattaaaatgtcataaaaaacCAGCTGAACTAGCTGCAGCGGCTGCAGCAAATAAAACTCAAACTGAAAATAGTTCAACAGCTACAACCGATTCATCATCATCCTCATCAACGTCACAATGTATTTGTTACATGTGCGGTGAATCGTTTAGTAATGTGACAACACTAAAAGCACATTTATTAATACATCAACCGAAAAAATATggttgtgatgtttgtgacaaaaaatttcatcgttCTGAAACATGTGAACAACATAAATTAACACATCAAACTACAACAACAACAtTTGATTGTAAAACATgtaacaaaatgtttaaatctcaaaaatcattgaaaaaacaTCAATTAATACATAACGATGCATCCGAATGTCATAAATGTGAATTTTGTAATcgtatatttatacaaaaacataatttagagaagcatataaattttcaacattCAACTGATCAACCGAAATTTCCATGTGATTTATGTACAAACGTCTTTACATCCGCGAATAATTTAAAGGATCATAAAGCTACACATAATTTATCTGATAGTCTGAATAGCAGTAAACAACTTTCatgtgaatattgtaaaaagaATTTTACAAAGacaaatttattaaaagcccATTATGTGACAACACATTTAAATCGTATGTTCTCCTGTCCATATTGTACAACAATTGTAAAACATCGTGCATCAATACGTCGTCATTTAAGTAAAAGCCATCGTGAGAAACGTAGTGAATGGGATAATTCAGATTTTATTGGTAAATTAgtatcacaaaataaaaaaccaccGGATGAAGAACATGACAACACAACCTCATCAACAATTGATATCAACACAGCATCCACACAACATTTAGTTCCTATTGAACCAGTAACATCATCAACAATGAATATAACAGATAATCTAACAAATAATAGTACAACAAATACGAATGAttcaacaattttattacaaaattcatCAACCGATAATGAAATGGATACAAATGATATTAATCAAAATCATACATTAATTgttgaacaacaacaacaaccagaTCAACATATGGTACAACAGAATCAACCCCAACAACATTTATtaccaaaaatgtataatacaaTGTCACAGATGGTTGATTCAACTCATCAATTATTTACAACAGCAAATAATGATCAAttagaatttcaaaatattatatatttaaagaataatCATGATGTTGATTTAGATTTAGGGAAAATCACTGAATACAGTAATTTAGATTCAGCAACAGCGAAATTATCACAATTCTCAGATTTATCATCAACGTCATCACAAATACAAGTCACATCACACAGTTCACATCCATTACATCAATCAAATAATACAGACAATTTACCAAAATTCACACGTATTGATCGTTCGAATGATTTCGATATGATGGATATACAATCGTTGATATCAACTGATAGTGGTATGATTGAATTCCCGAATGAATTGGTTGAACGTACGGATACAACACAATTTACGAATAATATGAATTTGCAGTTACATAATgTGAATTTACACGGAAATTCAAATTTGTTACATATGACTGATGAAGATCGTGAAGTAACATTAGGTAAGAACGCCTTTATCTTAGATGATGGAACAATTGTGGAGCCCCAAGAAGCGggtaatttaatgttttatgtaCTTAACCAATcataa
Protein Sequence: MPTIINLENIENDLGAQINNTIEYINKGCTLCGGDSHKIEECNILTNIKHIHDKKVPTRARLTLPSELRVETMSDGTCNVVAQVPLPKGTRFGPFEAKKIQILHPLITFPIKVFKMEENDTECYFDPSNEDFANWMCFVAAASDILEQNLICYQMKNDIYYSAIRDIKIGEYLKVWYAAYYAEKMGTAVLKGVEPDLQNYADDIKVEKLVNQKVAETLPAECLGATTDTSIWVCRFCKTTIKNIVLFSTHLQQHYKDLALKTFTCTICYKHCISEKTLLSHQITVHKLNAHKLPLPLKHSEITTSIVDTTSSSSSTNNNSIQHFFSNKKDESTVVESTTTSVVTSPTSTDQQINTNSLFTKINVYDTDLDFSTKTIVNDSLVGGQTQDQLDQNTSLLDQSTNALLVDNITLNYNHHDLNNVMLTKISELNEHLKFDIKDTTVSGSDLNDSLNTDSLHDILCEDDSKASKIAQEKSIADFSLDFVESNGLNLNTSSTDNTSTLSTNDTNSNTNNTTTQDLPPPESGPPYFCDICRKEFQNIEYLIRHLKKHCGEFTCIDCLAVFGRRENFLNHSCKWDPKKKNTYECMYCSKEFSEQKYLNRHVQRHNKQRKTCPKCGTVFENESSLEHHVCDTSKPLVIEKKFECDICKNRYIKNSYLRGHILKCHKKPAELAAAAAANKTQTENSSTATTDSSSSSSTSQCICYMCGESFSNVTTLKAHLLIHQPKKYGCDVCDKKFHRSETCEQHKLTHQTTTTTFDCKTCNKMFKSQKSLKKHQLIHNDASECHKCEFCNRIFIQKHNLEKHINFQHSTDQPKFPCDLCTNVFTSANNLKDHKATHNLSDSLNSSKQLSCEYCKKNFTKTNLLKAHYVTTHLNRMFSCPYCTTIVKHRASIRRHLSKSHREKRSEWDNSDFIGKLVSQNKKPPDEEHDNTTSSTIDINTASTQHLVPIEPVTSSTMNITDNLTNNSTTNTNDSTILLQNSSTDNEMDTNDINQNHTLIVEQQQQPDQHMVQQNQPQQHLLPKMYNTMSQMVDSTHQLFTTANNDQLEFQNIIYLKNNHDVDLDLGKITEYSNLDSATAKLSQFSDLSSTSSQIQVTSHSSHPLHQSNNTDNLPKFTRIDRSNDFDMMDIQSLISTDSGMIEFPNELVERTDTTQFTNNMNLQLHNVNLHGNSNLLHMTDEDREVTLGKNAFILDDGTIVEPQEAGNLMFYVLNQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00333387;
90% Identity: iTF_00333387;
80% Identity: -