Nfla021299.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986045.1:27722883-27724630[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0015 0.054 14.5 0.5 2 21 156 175 155 176 0.92 2 14 5.4e-05 0.002 19.0 0.3 1 23 182 205 182 205 0.96 3 14 0.24 8.9 7.5 1.1 1 23 214 236 214 236 0.94 4 14 0.0072 0.27 12.3 0.2 3 23 254 274 253 274 0.98 5 14 0.16 6 8.1 2.4 1 23 286 308 286 308 0.98 6 14 0.0045 0.17 13.0 2.3 1 23 313 335 313 335 0.98 7 14 0.43 16 6.7 0.8 1 23 344 365 344 365 0.96 8 14 0.96 36 5.6 4.6 1 23 370 392 370 392 0.96 9 14 4.8e-05 0.0018 19.2 0.3 3 23 398 418 397 418 0.97 10 14 0.014 0.53 11.4 2.9 1 14 424 437 424 446 0.83 11 14 3e-05 0.0011 19.8 0.2 1 23 452 474 452 474 0.98 12 14 4e-05 0.0015 19.4 0.9 1 23 480 504 480 504 0.96 13 14 0.0043 0.16 13.0 1.6 1 23 510 532 510 532 0.96 14 14 0.00016 0.0058 17.6 6.2 1 23 538 561 538 561 0.95
Sequence Information
- Coding Sequence
- atggaAATTGAATTATATTCGGTTAATGATCTACAAAAATTATGTAGATTATGCATGGGAATGGGTTCAGAAATGTATTCAATATACGATTTAACCCCGTTAAATGAAGTTGGACAGCATATTCAATTCGTGGAAATGATAATGGAGTGCAGTTCACTCATAgtTGAATCTGGTGATGGATTACCTGAAGCTGTTTGTGTCGATTGTTTAGAAAGTTTACGCAGTGCATATTCATTCAAACAACGTTGTGAAAAATCGGATATCAGTTTACGACAATTAATTGACATATTTAACGGGACAAAAAATGACGTAGAATCTGATTGTATTGAAACAGTATATGATGTTGATGAAGATATAAAAGAGAATCTTTTGTATATCAATTGTGATACGACGAACGATGTCAaagattttgatttaaaaaatgaagaTGGTGAAAGTATTCCAGACATATCTAGTAAATTAATATCATGTAATTATTGCTCGAAAGAGTTCACATCTGAATTTAGTTTAAAAGTACATGAGAAATATTGtgagaataaaatatttacctgtGATATATGTTCTGAGAATTTCACTGATGAATCTTTATTGACACAACATTTAACTAGTGAGCATAGTcttataaataatcaaaaagaattTGTATGCGATATTTGTGACGATGTTTTTATCGATCATAGTAAACTTTTATTCCATTTTAAAATGCACATAGATGTTGCCACATATTTTCAAACGGTTCCAGatgataaaatattactttGCTATTATTGTAACGCCGATTTCACTAAAGCATTTGATTTAGAAACTCATATTGCTTCCCACAAACCAGAGCAGCCACAAATCATTGAAATAAAACATCAATGCCGAATATGTGATTACGAAAGTTCCGATGATCATTTAGTTAAAGAGCATGTAAAAACACATGGAGTGAAtccatttatttgtaatttatgcCTCTTGAGCTTTACATCAAATCGAAAATTTCGATTACATTTAAAATCTCATTATAATTATACCCCTAAAGATAATTATAAGTGTTCTGCCTGTAAACAAACTGTAAtacgtgaagatttaaaaaatcatttaaaatcacaTGAAAATCTGTTACATACGTGTACAGGATGTTCGAAGTCATATTTAACATTATGCGAATTTGAGTCGCATCAAAATGATCATGTTAATTCTAATTTATGTCCAATTTGTGGTAAGTTATTTGCACGAAAATCAAGACTTACTTCACATATGGTATATCACGATACAGCAACACCGTATAAATGTTCAGTGTGTGATAAGAGTTTTCGTACCAAGGCAATATGTAAGAAACATGAGGATATTCATAATAATGAAAAACCGTTCATATGTACTTGGTGCGGGTACACTACAAAACGTACGGGTGATCTGAATATTCATATTCGTATTCATACGGGTGTTAAACCATATAATTGTACATTACCTggttgtgataaaacatttacaacgTCCAGTCAACGTAATGAACATGTACGACGTCATACGGGCGAACGTAATCATATTTGTCAGTTatgtaataaatcatttttggaGAGTAAAACGTTAAAGATACATATGTTAGTGCATTCTGGCGTACGACCACATAAATGTGATATTTGTGGTAAATATTTTCGACGTAAACATCATTTAGTTGTTCATAAAGCTAAATTACATGGTGAATGA
- Protein Sequence
- MEIELYSVNDLQKLCRLCMGMGSEMYSIYDLTPLNEVGQHIQFVEMIMECSSLIVESGDGLPEAVCVDCLESLRSAYSFKQRCEKSDISLRQLIDIFNGTKNDVESDCIETVYDVDEDIKENLLYINCDTTNDVKDFDLKNEDGESIPDISSKLISCNYCSKEFTSEFSLKVHEKYCENKIFTCDICSENFTDESLLTQHLTSEHSLINNQKEFVCDICDDVFIDHSKLLFHFKMHIDVATYFQTVPDDKILLCYYCNADFTKAFDLETHIASHKPEQPQIIEIKHQCRICDYESSDDHLVKEHVKTHGVNPFICNLCLLSFTSNRKFRLHLKSHYNYTPKDNYKCSACKQTVIREDLKNHLKSHENLLHTCTGCSKSYLTLCEFESHQNDHVNSNLCPICGKLFARKSRLTSHMVYHDTATPYKCSVCDKSFRTKAICKKHEDIHNNEKPFICTWCGYTTKRTGDLNIHIRIHTGVKPYNCTLPGCDKTFTTSSQRNEHVRRHTGERNHICQLCNKSFLESKTLKIHMLVHSGVRPHKCDICGKYFRRKHHLVVHKAKLHGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00333344;
- 90% Identity
- -
- 80% Identity
- -