Ccar019494.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:23114329-23118142[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.012 0.27 12.2 0.2 3 20 154 171 152 173 0.92 2 12 0.0003 0.0064 17.3 1.2 1 23 179 202 179 202 0.96 3 12 0.47 10 7.2 1.0 1 23 211 233 211 233 0.94 4 12 0.0058 0.12 13.2 0.1 2 23 250 271 249 271 0.95 5 12 0.84 18 6.4 1.5 1 23 283 305 283 305 0.97 6 12 0.021 0.45 11.4 2.1 1 23 310 332 310 332 0.97 7 12 7.2e-05 0.0016 19.2 0.3 3 23 395 415 394 415 0.97 8 12 0.022 0.47 11.4 2.9 1 14 421 434 421 443 0.83 9 12 4.5e-05 0.00097 19.8 0.2 1 23 449 471 449 471 0.98 10 12 6.1e-05 0.0013 19.4 0.9 1 23 477 501 477 501 0.96 11 12 0.0065 0.14 13.0 1.6 1 23 507 529 507 529 0.96 12 12 0.00024 0.0051 17.6 6.2 1 23 535 558 535 558 0.95
Sequence Information
- Coding Sequence
- ATGGAAATCGAATTATATTCAGTAAATGATCTACAGAAATTATGTAGATTATGTATGGGTATGGGTTCAGAAATGTATTCAGTATACGATTTAACTTCATTAAATGAAGGTGGACGTCATATTCAATTCGTTGAAATGATAATGGAGTGCAGTTCACTCATAGTTGAATCTGGTGATGGATTACCTGAAGCTGTTTGTGTTGATTGTTTAGAATGTTTACGAAATGCGTACACATTCAAACAACGATGTGAAAAATCGGATGTTAGTTTACGACAATTAATTGACATTTTTAACGGAACAAAAACTGAATTAGATGAATACGATTGTATTGAAACACTAGATGATGATGAAGATGTAAAAGAAAATTTATTGTATATCAAAAATGAGGATGAAAATGATGTAAGAAATTGTGATTTAAATAATGAAGATTTTGAAAGTATTCCGGATAGTAAAATAATATGTACTTATTGTTCGAAAGAATTCATATCTGAATTTAGTTTAAAAACACATGAACAATTTTGTGAAAATAAAATATTTACTTGTCATATATGTTCTGAGAATTTTACCGATGAAATATTATTAACCAAACATTTAACTAGTGAACATAGTCTTGTAAATAGTCAAAAAGAATTCATCTGCGATATTTGTGACGATGTGTTTGCTGATCATAGTAAACTTTTATTCCATTTTAAAATGCACATAGATGTTGCTACATATTGTGAAATAATTCCAAACGATAAAATATTGATTTGCTATTACTGTAATGCTGATTTTACTAAAGCTTTTGATTTAGAAACTCATATTGCTTCTCACAAGGTAGAAAAGAGTGAAAAGAATGAGGACAATTATGAATGTCGTGTGTGCGATTATAAAAGTTGTGATGATAATTTAGTTAAAGAGCATTTAAAATTACATGGCGTGAGTCCCTTTATTTGCAATTTATGTCTTATGAGCTATTCAACGAATCGAAAATATCGATTACATTTAAAATCTCATTACACTCATACAGTGAAGAGTATGTATAATTGTTCTGCTTGTAAACAAGATGTATCAGGTAACGATCTTAAAGCTCATTTAAAATTACATTCGAATCTTTTACATACATGTACAGGATGTTGTAAGTCTTATTTAACACAAGGTGAATTTGATTCACATCAAAATGACCACGTTAATTCTAATTTATGTCCTATTTGTGGTAAATTATTTGCACGTAAATCACGATTAACATCGCATATGGTATACCATGATACAGCAACCCCTTATAAATGTTCAGTTTGTGATAAAAGCTTTCGTACAAAAGCAATATGTAAAAAACATGAGGATATTCATACGAACGAAAAACCGTTCATATGCACATGGTGTGGATATACTACGAAACGTACAGGTGATTTAAATATCCATATTCGTATTCATACGGGAGTTAAACCATATAATTGTACGTTACCTGGTTGTGATAAAACATTCACAACGTCCAGTCAACGTAATGAACATGTACGGCGTCATACAGGCGAACGTAATCATATTTGTCAGTTATGTAATAAGTCATTTTTGGAGAGTAAAACTTTGAAAATACATATGTTAGTACATTCGGGAGTTCGTCCTCATAAGTGTGATATTTGTGGTAAATATTTCCGACGTAAACATCATTTAGTTGTTCATAAAGCTAAATTGCATGGTGAATGA
- Protein Sequence
- MEIELYSVNDLQKLCRLCMGMGSEMYSVYDLTSLNEGGRHIQFVEMIMECSSLIVESGDGLPEAVCVDCLECLRNAYTFKQRCEKSDVSLRQLIDIFNGTKTELDEYDCIETLDDDEDVKENLLYIKNEDENDVRNCDLNNEDFESIPDSKIICTYCSKEFISEFSLKTHEQFCENKIFTCHICSENFTDEILLTKHLTSEHSLVNSQKEFICDICDDVFADHSKLLFHFKMHIDVATYCEIIPNDKILICYYCNADFTKAFDLETHIASHKVEKSEKNEDNYECRVCDYKSCDDNLVKEHLKLHGVSPFICNLCLMSYSTNRKYRLHLKSHYTHTVKSMYNCSACKQDVSGNDLKAHLKLHSNLLHTCTGCCKSYLTQGEFDSHQNDHVNSNLCPICGKLFARKSRLTSHMVYHDTATPYKCSVCDKSFRTKAICKKHEDIHTNEKPFICTWCGYTTKRTGDLNIHIRIHTGVKPYNCTLPGCDKTFTTSSQRNEHVRRHTGERNHICQLCNKSFLESKTLKIHMLVHSGVRPHKCDICGKYFRRKHHLVVHKAKLHGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01061131;
- 90% Identity
- -
- 80% Identity
- -