Basic Information

Insect: Nineta flava
Gene Symbol: -
Assembly: GCA_963920215.1
Location: OY986041.1:35447271-35452015[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 7.8e-05 0.0029 18.5 0.7 1 23 136 158 136 158 0.95

2 15 0.0036 0.14 13.3 1.1 3 23 166 186 165 186 0.99

3 15 0.0003 0.011 16.7 0.1 1 23 303 325 303 325 0.98

4 15 3.9 1.4e+02 3.7 0.1 1 23 331 354 331 354 0.94

5 15 0.00021 0.0076 17.2 3.8 1 23 379 401 379 401 0.97

6 15 0.26 9.5 7.4 0.0 1 23 414 436 414 436 0.95

7 15 0.019 0.7 11.0 0.2 1 23 442 465 442 465 0.93

8 15 0.1 3.9 8.7 2.1 3 19 474 490 473 491 0.95

9 15 0.00024 0.0089 17.0 5.4 1 23 500 522 500 522 0.98

10 15 0.0084 0.31 12.1 0.4 2 23 528 549 527 549 0.97

11 15 2.5e-05 0.00093 20.1 0.4 1 23 557 579 557 579 0.98

12 15 0.011 0.4 11.8 0.2 3 23 587 607 585 607 0.97

13 15 0.00034 0.013 16.5 0.3 1 23 613 635 613 636 0.95

14 15 0.2 7.3 7.8 0.8 1 23 650 672 650 672 0.96

15 15 0.0046 0.17 12.9 0.1 1 20 1071 1090 1071 1093 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	7.8e-05	0.0029	18.5	0.7	1	23	136	158	136	158	0.95
2	15	0.0036	0.14	13.3	1.1	3	23	166	186	165	186	0.99
3	15	0.0003	0.011	16.7	0.1	1	23	303	325	303	325	0.98
4	15	3.9	1.4e+02	3.7	0.1	1	23	331	354	331	354	0.94
5	15	0.00021	0.0076	17.2	3.8	1	23	379	401	379	401	0.97
6	15	0.26	9.5	7.4	0.0	1	23	414	436	414	436	0.95
7	15	0.019	0.7	11.0	0.2	1	23	442	465	442	465	0.93
8	15	0.1	3.9	8.7	2.1	3	19	474	490	473	491	0.95
9	15	0.00024	0.0089	17.0	5.4	1	23	500	522	500	522	0.98
10	15	0.0084	0.31	12.1	0.4	2	23	528	549	527	549	0.97
11	15	2.5e-05	0.00093	20.1	0.4	1	23	557	579	557	579	0.98
12	15	0.011	0.4	11.8	0.2	3	23	587	607	585	607	0.97
13	15	0.00034	0.013	16.5	0.3	1	23	613	635	613	636	0.95
14	15	0.2	7.3	7.8	0.8	1	23	650	672	650	672	0.96
15	15	0.0046	0.17	12.9	0.1	1	20	1071	1090	1071	1093	0.93

Sequence Information

Coding Sequence: ATGGAGGAAGGTTTTAATATAGCTTGGGATGATGGCCCAACCGTTGGCCATTTGGGTATGTGTGAAGAGGTAGTTGTACAAGATATTGATAATGATGGTATTGAAGTTGATGAAGGCGAGACGGAGGTTCTGTATATGCAAGATGGGGAGAACGATGAACATGTTGTTTATATGCATACAGACGAAGTACTTGTTGATCAAACTGAAGAGATTGCTCTTACTGAAGATGGTGGTTATATTGAGTGCCAAGTTGCTGAGGAAATTATTACCGATGATTGGGCTAATCCTCAGAACGATGAAAGaGTTGAAATTGTTGGAGAATATACTGCAAATCAAGTGGACGGTACCGACGACATAGAAATTCCTTTACCCACCGACCAAGATGAATATACAACAAGTCGACCATACCCGTGCGACTTTTGTAGTCGCCGTTTTCGTAAAAAAGCCAATTTAATGAATCATATGGTTGCACATCAAACAGATAGACCACATGGATGTAACCTATGCGGAGCGAGATATATTCGTAAATGTGATTTaatgaatcatttaaaaattcatgcgTACGTACCTGAACCTGAAGCATACGAAGATGAAGAAGATGATAATGATATGAGTTATCAAATGGAGGAATCCGATAGTGAAAGGCCACGTAAACGAAAGTCAAATTcgaaaaagaagaaaagtagTAAAGTCAAAGTGAAACAGGAAGTtattgaagaagaaaaatattcaGCTCCATCTAGATCTTATGATTACGTAGATGAAGATATGAGATTACTTACTGAAATGGCTAATAGTTCAGCGCGTACACTTGAGTACAGTAGCCCGGAGTATAATGATATATTACCCCCCGAAAATCATCCGATCAGCGAACCTAGGTACCCAATAACTGATCCTAGGAAACCTTTTGTATGTCAACATTGTGGAGTAGGATTCGCTCGAGAGAAAGCACTAGCTTCTCATGCTCGAATTCACGGAGGTGATAGCCCATTCGAGTGTGAGACTTGTAACGATATGTTTTGGGATATTGCTCTACTTAAAGAGCATGTTCGAAACAAACATGGTGATTTGGCTTTAGATAATTATGAAGATGATGATGAAGATTATGTCGATGAAGAAGAACGTTACGGAGATTATTTTTGTCAAACTTGTGGTATGACTTTTCATCGACAAGAtttacttaaacgtcacagtcGTATTCATGTAAAAGAGGAGTATGTAAATGACTCTGAGTTCGGACATGTATGCAATGTATGTGGTGATTCATTCCCAGAGGCCTTAGATTTGTTAGCGCATGCAGAAGTACATGCTAGATTAGATATTCATCGTTGTATGTTATGTGGTGAAAGTTTTGCACAAGAGCAAGCTATGGCTACACATATAGCTCAACGTCATGGCAAAAATATGCCACCAAATTCATGTATGCTTTGTGGTAAAACATGCAAAGATCGCAGAACGTTATTAAAACATTCTTGGGAGCATTCCAGGGAGAAAACATTTTCATGTTCGAAATGTACTAAAAGTTTTCACAATAAGGCTCGTTTAAGGCGACATATGTTATCACATCGGAATAAATCTGTTACGTGTAATGTATGCGGTGAAGATTTCCCCGATGGAAGGTCACTTATGAATCATCGACATAGTCATACAAATATGTCGGGAAGACAATTTCCATGTAGAGAATGTGGGAAGACATTTGGGTCGCGTAGTTCACAACAAATTCATATTCGAATACATACTGGTGAACGTCCATATGGGTGTCGATTTTGTTGGAAAGCTTTTGCTGATGGTGGTACATTGCGTAAACATGAACGAATACACACCGGTGAAAAACCGTATGCATGTGCAGTATGCCCTAGAGCTTTTAATCAACGTGTGGTACTTCGTGAACATATCCGATCACATCATTCGGGCCCTGACCCAAAATATGGTACAACAATGACGCCATATTGTTGCTCAGTATGCAGTGATCTATTTTCAACGTCACAAGATCTAATTGTTCATTTAATACAACATTGCGATTTGAATACGGCAATGAAACGCCAACCGCAAGTGGGACCACGTAAATATAAACGTCGTAGAAAATTAAAGCCACACGAGCTGGAAAGATTATCAAGTCGTATGGATAGAGAAGACATCGATGATATGTTATCTGATTCGGACGATAATACCAAACGTAAATTAGGTCGAAAAAATAAGAAACCTAAACCTCAAATTGAGGAGAATTATGAGTCAGTATTTAAAAGTTTTGAGTCTGCTGTAcagacaataaataatttagtaaattcaAAGCCAAGCGGAACTAGAGGACGCAAGAAAAAACTTACCAATAATAGTGAGTCCCCACAAACATCAGTGCCATCTCGACCAAAAATGATTCACACTCAAAAAACTCGAGTAGCTGTTGAAGTAAGTTCAAGTGATGGAAGTAAAGTTCGTCATAAAACTAAGACATTAATTACACGAACAACTCCGGCGGTTGTAACAAACACAAATGAAAAGACAACACCAGAAAAAAATGGTGAACGTAATCGTCCTCGAACTAAAAATGTTAGTTATCATGTACTCCAACCAGAAAAGTATCCACCAGCTACATTTGAACAATATAAAGAAGAGACGGCTGAAGATGTGTTGCCAATGAAATCTGAACAAAATATTATGGTGAAATCAGAACCAGAATCTCGACGTGAAAACTATATGGACCTGGaggaaatgttttatcacatgaATAACGATTATGGCGGAGTTGAAGAACAGAGTGCACTTGGTATCGATGGTAACTTCCACGTTGCACAAAACATTGAAGTTAGTGAAGATATTGTTCCCGAAGTTGAGAACGAAGAAGTATGTATTGAAGAGCAAGTTGAAAACGAGGAATATTTGGAAGATGATAATTCTGAAGATATAACcgataattatatacattttcaacaaaaaattgaGACTGAAGAAACATCGGTACCAATGAATATTGTACATATAGCAAATAACATGGAACACGCTGTTGAGCAAGGTGAAGATTACGGCGAATCGGTTTTACCTGATTCGTTAGCAGTACATCAAGAACAGCAACAACATTTTGAGTCAACAATACATCACCAACAGCAGCCGGGCCAGCAAAATCatcaaattaatgtgaaaatgGAACCGTTAGAATCGAGTTCGTTATATGAGTTGGCTGAATTATCGATGCAACACGCgcagaataaatttaaatgtgaaATGTGTAGTGCAACTTTCTCTGATAGAGGACAATTATTGTTACATGTTCCAGTGCATATCTGA
Protein Sequence: MEEGFNIAWDDGPTVGHLGMCEEVVVQDIDNDGIEVDEGETEVLYMQDGENDEHVVYMHTDEVLVDQTEEIALTEDGGYIECQVAEEIITDDWANPQNDERVEIVGEYTANQVDGTDDIEIPLPTDQDEYTTSRPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGARYIRKCDLMNHLKIHAYVPEPEAYEDEEDDNDMSYQMEESDSERPRKRKSNSKKKKSSKVKVKQEVIEEEKYSAPSRSYDYVDEDMRLLTEMANSSARTLEYSSPEYNDILPPENHPISEPRYPITDPRKPFVCQHCGVGFAREKALASHARIHGGDSPFECETCNDMFWDIALLKEHVRNKHGDLALDNYEDDDEDYVDEEERYGDYFCQTCGMTFHRQDLLKRHSRIHVKEEYVNDSEFGHVCNVCGDSFPEALDLLAHAEVHARLDIHRCMLCGESFAQEQAMATHIAQRHGKNMPPNSCMLCGKTCKDRRTLLKHSWEHSREKTFSCSKCTKSFHNKARLRRHMLSHRNKSVTCNVCGEDFPDGRSLMNHRHSHTNMSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYGTTMTPYCCSVCSDLFSTSQDLIVHLIQHCDLNTAMKRQPQVGPRKYKRRRKLKPHELERLSSRMDREDIDDMLSDSDDNTKRKLGRKNKKPKPQIEENYESVFKSFESAVQTINNLVNSKPSGTRGRKKKLTNNSESPQTSVPSRPKMIHTQKTRVAVEVSSSDGSKVRHKTKTLITRTTPAVVTNTNEKTTPEKNGERNRPRTKNVSYHVLQPEKYPPATFEQYKEETAEDVLPMKSEQNIMVKSEPESRRENYMDLEEMFYHMNNDYGGVEEQSALGIDGNFHVAQNIEVSEDIVPEVENEEVCIEEQVENEEYLEDDNSEDITDNYIHFQQKIETEETSVPMNIVHIANNMEHAVEQGEDYGESVLPDSLAVHQEQQQHFESTIHHQQQPGQQNHQINVKMEPLESSSLYELAELSMQHAQNKFKCEMCSATFSDRGQLLLHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00333093;
90% Identity: iTF_00333093;
80% Identity: -