Basic Information

Insect: Nineta flava
Gene Symbol: PRDM5
Assembly: GCA_963920215.1
Location: OY986040.1:122012267-122018606[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.37 14 6.9 2.2 2 23 147 169 146 169 0.96

2 15 0.081 3 9.0 0.4 1 23 175 197 175 197 0.96

3 15 8.7e-06 0.00033 21.5 0.3 1 23 218 240 218 240 0.98

4 15 0.034 1.3 10.2 2.3 1 21 246 266 246 267 0.88

5 15 0.013 0.48 11.5 0.6 2 23 311 333 310 333 0.95

6 15 0.0002 0.0073 17.3 0.8 1 23 340 363 340 363 0.96

7 15 0.00058 0.022 15.8 3.1 2 23 376 397 375 397 0.96

8 15 0.0015 0.055 14.5 0.5 3 23 405 425 403 425 0.97

9 15 0.001 0.039 15.0 4.4 2 23 436 457 435 457 0.98

10 15 0.00019 0.0071 17.3 1.6 1 23 466 489 466 489 0.95

11 15 2.4e-05 0.0009 20.1 0.4 1 23 495 517 495 517 0.97

12 15 0.00025 0.0091 16.9 0.3 1 23 522 544 522 544 0.98

13 15 5.6e-05 0.0021 19.0 0.2 2 23 550 571 549 571 0.94

14 15 1.6e-05 0.00058 20.7 5.5 1 23 577 599 577 599 0.97

15 15 0.11 4.2 8.6 1.5 1 23 605 628 605 628 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.37	14	6.9	2.2	2	23	147	169	146	169	0.96
2	15	0.081	3	9.0	0.4	1	23	175	197	175	197	0.96
3	15	8.7e-06	0.00033	21.5	0.3	1	23	218	240	218	240	0.98
4	15	0.034	1.3	10.2	2.3	1	21	246	266	246	267	0.88
5	15	0.013	0.48	11.5	0.6	2	23	311	333	310	333	0.95
6	15	0.0002	0.0073	17.3	0.8	1	23	340	363	340	363	0.96
7	15	0.00058	0.022	15.8	3.1	2	23	376	397	375	397	0.96
8	15	0.0015	0.055	14.5	0.5	3	23	405	425	403	425	0.97
9	15	0.001	0.039	15.0	4.4	2	23	436	457	435	457	0.98
10	15	0.00019	0.0071	17.3	1.6	1	23	466	489	466	489	0.95
11	15	2.4e-05	0.0009	20.1	0.4	1	23	495	517	495	517	0.97
12	15	0.00025	0.0091	16.9	0.3	1	23	522	544	522	544	0.98
13	15	5.6e-05	0.0021	19.0	0.2	2	23	550	571	549	571	0.94
14	15	1.6e-05	0.00058	20.7	5.5	1	23	577	599	577	599	0.97
15	15	0.11	4.2	8.6	1.5	1	23	605	628	605	628	0.93

Sequence Information

Coding Sequence: atgtcaGCGAATAATCTGTGTCGCCTTTGTGCACTAAAATTTCCCTCAGCATCACTAAAAACTCTACAAGAATTAAAAAGTGAACAATTCGATGCACTTATCGTACAATATCTACAAATTCAGATAAATGATAGTGATGGCTATCCAAATACGGCCTGTAAATTATGTTGCAAAACACTATACGATTTCGATCAATTTCTTGTTAAAGTTAAAGTGGCTCAACATAAATTACGCTCAACATTTGGAGCAAATTCGTCATTTACACCTAATATTAAGGAGGAAACTCAATCtgataatccaaatttattccttcaggagtttcaagaaaaaaatgttaaagttgaGACTAGCGATtatgATACGGGAAATGAAAACgatgaaaaattgaaatcggAAAATGcgaaaaatgaaaaacttataaataaaattcaccaTTGGAAATGCTATAAATGTAATATTCGTGTACAGAATGCGGAATGtttagaaaaacattttaaacgtGTTCACGAAACTGATGTTGAGTACGTGTGCACTGAGTGCAACGCcctgtttaataaattaacggAATTTGCCCAGCATTATAGTGGACATGGCATTATAAGACGATATGCAGCAGCAAAAATAAGGACCGGCaccacacaaaaattaaaatattcgtgTGAAGTTTGTGGAAAAGGATTTGCTAAACCATCAGCGTATAAAAGCCATAAAAATACACATTTAGGAATCAAACGATTTATGTGTGAATTTTGTGGTAAAAAGTTTACTTTAAAACGTCATAAAGAAATTCATAAATTAACAGCATGTTTAAAACCGAATGCAATTACCAACGACGATTCACTTAATTTAAATAGAAATTATTTAGAAACGGATTCGAACACGTCAACAGCACAACCGGTGGTAAGTGAACAAGAATTAAAATCGAAATGGAAATGTGACACATgtggtaataaattttatacggcatacattttacaaaatcatcaaaaaaatgttcatggtGTCAAGAATCCAGAACATATTTGTACCGTTTGcgatataatatttgataataattcacAATATGAGGAACATTTAAAAACCACACATGGTATAGTCAGTAAGCGTAAAGCAGGCTCTATGTGGAAGTGTGATAAATGTCCGAAAAAGTTTAATCATTTATCGAAATATTTACGGCATACACTTATTCATACTggtgTAAGACGCTTTGGTTGTAAagaatgtggaaaaaaattttatcttaaagAAAATTTAGTTGGTCATTCATTAACACATAAAAGAGCTGAAGTTAATGAGCACGAAGTGCAATGTAAACAGTGCAAtaaaacgtgtaaaaatcaatatatactGGAACGTCATTTAAAAACGCACATACCAATTGATGAACGCTATATACATAAATGTGACGTCTGTAAACGAAAATTTGTTTCAGCTGAAACTTTAAAAACACATCAAGAACAAGCACATAAATacGAAGAAAGTTTTATATGCGATGAatgtggaaaaattttcaaatctaaATATCGTTTAGCCGAACatacaaatattcataaaaatataacattcagTTGTGAAATATGCTCCAAAGCTTTCAACAGTGTACCCGCGTTAAAAACGCACAAATTAACGCATATGGAAAAAAGAGTTGAGTGTCCAGTGTGTGGAATGAAATTCCGTCGAACGGGCCAATTAACCCGACATTCAACAATACATTCAGGTAAACGTCCACATGAATGTGCTTATTGCCATAAACAATTTCGACAAAAGTATGCTCTAaaggtacATATGCGTCAACATACTGGTGAGCGTCCTTACTCGTGTATTGAGTGCAATCATTTCTTTGCCAATGATGGCAACTTTATTAAGCATTTGAAAGGACGTCATGGCTTGCAGAATGTTTCCATTGCAAATCGACATCGATATCCGTTTGATAATTAA
Protein Sequence: MSANNLCRLCALKFPSASLKTLQELKSEQFDALIVQYLQIQINDSDGYPNTACKLCCKTLYDFDQFLVKVKVAQHKLRSTFGANSSFTPNIKEETQSDNPNLFLQEFQEKNVKVETSDYDTGNENDEKLKSENAKNEKLINKIHHWKCYKCNIRVQNAECLEKHFKRVHETDVEYVCTECNALFNKLTEFAQHYSGHGIIRRYAAAKIRTGTTQKLKYSCEVCGKGFAKPSAYKSHKNTHLGIKRFMCEFCGKKFTLKRHKEIHKLTACLKPNAITNDDSLNLNRNYLETDSNTSTAQPVVSEQELKSKWKCDTCGNKFYTAYILQNHQKNVHGVKNPEHICTVCDIIFDNNSQYEEHLKTTHGIVSKRKAGSMWKCDKCPKKFNHLSKYLRHTLIHTGVRRFGCKECGKKFYLKENLVGHSLTHKRAEVNEHEVQCKQCNKTCKNQYILERHLKTHIPIDERYIHKCDVCKRKFVSAETLKTHQEQAHKYEESFICDECGKIFKSKYRLAEHTNIHKNITFSCEICSKAFNSVPALKTHKLTHMEKRVECPVCGMKFRRTGQLTRHSTIHSGKRPHECAYCHKQFRQKYALKVHMRQHTGERPYSCIECNHFFANDGNFIKHLKGRHGLQNVSIANRHRYPFDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00333149;
90% Identity: -
80% Identity: -