Basic Information

Insect: Chrysoperla carnea
Gene Symbol: PRDM5
Assembly: GCA_905475395.1
Location: FR997755.1:46579463-46590207[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.6 13 6.9 2.2 2 23 175 197 174 197 0.96

2 15 0.44 9.4 7.3 0.2 1 23 203 225 203 225 0.96

3 15 1.4e-05 0.0003 21.4 0.3 1 23 246 268 246 268 0.98

4 15 0.036 0.78 10.7 2.7 1 21 274 294 274 295 0.88

5 15 0.021 0.45 11.5 0.6 2 23 340 362 339 362 0.95

6 15 0.0012 0.025 15.4 1.0 1 23 369 392 369 392 0.96

7 15 0.00094 0.02 15.7 3.1 2 23 405 426 404 426 0.96

8 15 0.0024 0.051 14.4 0.5 3 23 434 454 432 454 0.97

9 15 0.0017 0.036 14.9 4.4 2 23 465 486 464 486 0.98

10 15 0.0024 0.051 14.4 1.6 1 23 495 518 495 518 0.92

11 15 0.00023 0.0049 17.6 0.5 1 23 524 546 524 546 0.97

12 15 0.00039 0.0085 16.9 0.3 1 23 551 573 551 573 0.98

13 15 9e-05 0.0019 18.9 0.2 2 23 579 600 578 600 0.94

14 15 2.5e-05 0.00054 20.6 5.5 1 23 606 628 606 628 0.97

15 15 0.18 4 8.5 1.5 1 23 634 657 634 657 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.6	13	6.9	2.2	2	23	175	197	174	197	0.96
2	15	0.44	9.4	7.3	0.2	1	23	203	225	203	225	0.96
3	15	1.4e-05	0.0003	21.4	0.3	1	23	246	268	246	268	0.98
4	15	0.036	0.78	10.7	2.7	1	21	274	294	274	295	0.88
5	15	0.021	0.45	11.5	0.6	2	23	340	362	339	362	0.95
6	15	0.0012	0.025	15.4	1.0	1	23	369	392	369	392	0.96
7	15	0.00094	0.02	15.7	3.1	2	23	405	426	404	426	0.96
8	15	0.0024	0.051	14.4	0.5	3	23	434	454	432	454	0.97
9	15	0.0017	0.036	14.9	4.4	2	23	465	486	464	486	0.98
10	15	0.0024	0.051	14.4	1.6	1	23	495	518	495	518	0.92
11	15	0.00023	0.0049	17.6	0.5	1	23	524	546	524	546	0.97
12	15	0.00039	0.0085	16.9	0.3	1	23	551	573	551	573	0.98
13	15	9e-05	0.0019	18.9	0.2	2	23	579	600	578	600	0.94
14	15	2.5e-05	0.00054	20.6	5.5	1	23	606	628	606	628	0.97
15	15	0.18	4	8.5	1.5	1	23	634	657	634	657	0.93

Sequence Information

Coding Sequence: ATGTCAGTGAATAATCTGTGTCGCCTTTGTGCACTAAAATTTCCCTCAGCATCACTTAAAACTTTACAAGAATTAAAAAGTGAACAATTCGATGCACTTATCTTACAATATCTACAAATTCAAATAACGGAGAATGATGGCTATCCAAATACGGCTTGTAAATTATGCTGCAAAACTTTATACGATTTTGATCAATTTCTTGTCAAAGTTAAAGTGGCTCAACACAAATTACGCTCAACTTTTGGTACTAATTCATCAATTACGGATATAAAAGAAGAAACTCAAACAGAAACCTCAAGTTTATTTCTTCAAGAGTTTCAAGAAAAAAATGTTAAAGTTGAGACTAGCGATTATGAGAATAATTATGACTCGATGGATATGGATCACTTTTTAAATGACTATACATTAAATTTAGATGAGAAGTCTGAAACTAAATCGGATTCAGAAGAAGATGAAAAAGAAGCAAAATTGAAAGCGGAAAATGAAAAAAATGAAAAACTAATAAATAAAATTAATCATTGGAAATGCTATAAATGTAATATTCGTGTACAAAATGCTGAATGTTTAGAAAAACATTTTAAACGTGTCCATGAAACTGATGTTGAATACGTGTGCACTGAATGTAATGCACTTTTTAATAAATTAACAGAATTTGGAATACATTATAATGGACATGGCGTAATAAGACGGTATGCGGCAGCCAAAATTAGAACTGGAAATCCACAAAAATTAAAATATTCATGTGAAGTTTGTGGAAAAGGATTTGCTAAACCATCAGCTTATAAAAGTCATAAAAATACACATTTAGGAATTAAAAGATTTACGTGTGAATTCTGTGGTAAGAAGTTTACATTAAAACGACATAAAGAAATTCATAAGTTAACAGCTTGCTTAAAACCGAACGCAATCACCAACGACGATTCACTTAATTTAAATAGAAATTATTTAGAAACTGTTGATTCAAATACTTCAACAGCACAACCAATAGTAAGTGAGCAGGAATTGAAATCGAAATGGAAATGTGACACATGTGGTAACAAATTTTATACTGCGTACATTTTACAAAATCATCAAAAGAATGTTCATGGTGTAAAGAATCCAGAACATATTTGTACCGTATGCGATATAATATTCGACAACAACAAGCAATATGAGGAACACTTAAAAACAACACATGGTATAGTCAGTAAACGTAAAGCAGGCTCAATGTGGAAATGTGATAAATGCCCGAAAAAGTTTAATCATTTATCGAAATATTTGCGACACACACTTATTCATACTGGCGTAAGACGTTTTGGTTGTAAAGAATGTGGTAAAAAATTTTATCTTAAAGAGAATTTAGTTGGTCATTCGTTAACTCATAAAAGAGCTGAAGTTAATGAACACGAAGTGCAATGTAAACAGTGCAATAAAACTTGTAAAAATCAATACATATTGGAACGACATTTGAAAACACACATTCCAATTAGTGAACGTTACATACATATATGCGATATTTGTAAACGGAAATTTGTTTCAGCGGAAACTTTAAAAACACACAAAGAACAATCTCATAAGTATGAAGAAACTTTCATTTGCGATGAATGCGGAAAACTTTTTAAATCTAAATATCGTTTAGCTGAACACACGAATATTCATAAAAATATAACATTCAGTTGTGAAATATGCTCCAAAGCTTTCAACAGTGTACCCGCGTTAAAAACTCATAAATTAACGCATATGGAAAAAAGAGTTGAATGTCCAGTATGTGGAATGAAATTCCGCCGAACTGGTCAATTAACTCGGCATTCAACAATACATTCGGGTAAACGGCCACATGAATGTGCATATTGTCATAAGCAATTTCGACAAAAATATGCCCTCAAGGTACATATGCGACAACATACTGGTGAACGTCCTTATTCGTGTATAGAATGCAATCATTTCTTTGCCAATGATGGTAATTTTATAAAGCATTTAAAAGGACGTCATGGTCTGCAGAACGTTTCCATTGCAAATCGGCATCGATATCCATTTGATAATTAA
Protein Sequence: MSVNNLCRLCALKFPSASLKTLQELKSEQFDALILQYLQIQITENDGYPNTACKLCCKTLYDFDQFLVKVKVAQHKLRSTFGTNSSITDIKEETQTETSSLFLQEFQEKNVKVETSDYENNYDSMDMDHFLNDYTLNLDEKSETKSDSEEDEKEAKLKAENEKNEKLINKINHWKCYKCNIRVQNAECLEKHFKRVHETDVEYVCTECNALFNKLTEFGIHYNGHGVIRRYAAAKIRTGNPQKLKYSCEVCGKGFAKPSAYKSHKNTHLGIKRFTCEFCGKKFTLKRHKEIHKLTACLKPNAITNDDSLNLNRNYLETVDSNTSTAQPIVSEQELKSKWKCDTCGNKFYTAYILQNHQKNVHGVKNPEHICTVCDIIFDNNKQYEEHLKTTHGIVSKRKAGSMWKCDKCPKKFNHLSKYLRHTLIHTGVRRFGCKECGKKFYLKENLVGHSLTHKRAEVNEHEVQCKQCNKTCKNQYILERHLKTHIPISERYIHICDICKRKFVSAETLKTHKEQSHKYEETFICDECGKLFKSKYRLAEHTNIHKNITFSCEICSKAFNSVPALKTHKLTHMEKRVECPVCGMKFRRTGQLTRHSTIHSGKRPHECAYCHKQFRQKYALKVHMRQHTGERPYSCIECNHFFANDGNFIKHLKGRHGLQNVSIANRHRYPFDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01061044;
90% Identity: -
80% Identity: -