Nfla022335.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986045.1:63001793-63003474[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.9 72 4.7 8.1 1 23 122 145 122 145 0.97 2 14 0.015 0.57 11.3 2.8 2 23 151 172 151 172 0.97 3 14 2.4e-05 0.00089 20.1 1.4 2 23 174 195 173 195 0.96 4 14 2.5e-05 0.00094 20.1 0.2 1 23 201 224 201 224 0.97 5 14 0.68 25 6.1 1.2 2 23 232 252 231 252 0.92 6 14 0.0031 0.12 13.5 2.7 2 23 260 282 259 282 0.97 7 14 0.0004 0.015 16.3 0.4 1 23 291 313 291 313 0.92 8 14 2.9e-06 0.00011 23.0 2.0 1 23 319 342 319 342 0.98 9 14 0.045 1.7 9.8 0.5 2 23 353 373 352 373 0.96 10 14 0.077 2.9 9.1 2.1 2 23 381 403 380 403 0.95 11 14 0.0015 0.056 14.5 0.2 3 23 414 434 412 434 0.96 12 14 4.6e-05 0.0017 19.2 1.6 1 23 440 463 440 463 0.98 13 14 2.9e-05 0.0011 19.9 0.6 1 23 469 491 469 491 0.99 14 14 2.5e-07 9.1e-06 26.4 1.3 1 23 497 520 497 520 0.97
Sequence Information
- Coding Sequence
- ATGGAtactaaaaatgtatttaataaaacagatttcataaaaatatgtcGAATATGTTTAAAACAATCCGATAATTTGACATCAATatcattatttcaaattattgaaaTGATAACCACATGTACTTCAGTACAAATATGGATCAATGACGAATTACCTAACCAAATATGTTCGAATTGTTTAGACGACCttcaaaatgcttttaaatTGAAACAACTCGCGGAAACATCAGATCACGAATTGCGTGAAATACTTCAGAATAATaacgaaataaataatgatttcgATGAAGATGATAAAGTATCGTTAAAAAGTGAAACCGAAAATATATCGATTAAAACAGAAATCgatgataaattaaaatattcatgtGATGAATGTAATTTTACATGTAATTACCTTCATCATTTAGGTTTACATAAGAAACGTTATCATTCCGCTAAAGGTGAACGATGTAAAATATGTAACTTAATATTCTATCATAAATTACAGTATGAGACACATTTAAAGTTACAtaaaaaatgtcgaatttgtaataaagtatttaaaacACCTAGTAAATTAGTACGACATAGTTCGGTGCACGTCACAGATCGTCCGTTTAATTGTGATAAATGtgagaaaagttttaaattagaatccGCACTTAAAATCCATATAAATGTTGCACATATCGCAACGGATAAACGTATACCATGTACTGTATGCGGTAAACATGTGATAAAACGCCATATTCAACGACATTTAATCGTACATAAGAATAATCGTGATATGATCAAATGTCCACGCTGTGATCGAAAATTCTTACATCAGAGCTCAATCAAAACTCATATACGTCGTGATCATGAAAAGATCGCtcatgaattaaaatatttatgcaatACGTGCGGTAAAAAATTTGACTCACGTATTGGACTCCAACGTCATAGTGTAGTACATAAACCAGATCGACCCTACGAATGCACTGAATGCGGACAAAcgtttaaattgaatttttccttAACCAAACATATTAAAACAAAGCACATGAATATAAACGCATATCATATTCGAATACCGTGTAAAATTTGTTcgaaacaaatatcaaaaacaaatatgcaaacaCATTTGAGAATTCATAAGAATAATCGAGATATGATTCAATGTTCACAATGTTCGAAATCATTTCTAcatgaaatttcattaaaacaacATGTCGAACGGAAACATGAGAATATTGCACGTagtttaaaacatttatgtaaTGTTTGTGGCAAAGGGGCTGGATCACGTGCGGAATTAGATATACATATGCGAACGCATAGCGATGAAAAAACTTATGAATGTGATAAATGTGgcattaaatataaatctagAGCGGGTTTAACGCATCACGTTAAAACAAcgcatttaaatataaaaccgtATTCGTGTACAGTGTGCTCGCAACGGTTTGCGTTAAAAGCCACATTGGCGACACATATGCGTACACATACTGGTGAGAAGCCATTTCGTTGTGTTATTTGTGAAAAATCGTTTAGTCAGAAGTCATCGTTACGTACTCATATGAAACTTGTACACTCAAATGTTGTATTGTATACGGATATTAAAAATAGTAACGATGATTTATAA
- Protein Sequence
- MDTKNVFNKTDFIKICRICLKQSDNLTSISLFQIIEMITTCTSVQIWINDELPNQICSNCLDDLQNAFKLKQLAETSDHELREILQNNNEINNDFDEDDKVSLKSETENISIKTEIDDKLKYSCDECNFTCNYLHHLGLHKKRYHSAKGERCKICNLIFYHKLQYETHLKLHKKCRICNKVFKTPSKLVRHSSVHVTDRPFNCDKCEKSFKLESALKIHINVAHIATDKRIPCTVCGKHVIKRHIQRHLIVHKNNRDMIKCPRCDRKFLHQSSIKTHIRRDHEKIAHELKYLCNTCGKKFDSRIGLQRHSVVHKPDRPYECTECGQTFKLNFSLTKHIKTKHMNINAYHIRIPCKICSKQISKTNMQTHLRIHKNNRDMIQCSQCSKSFLHEISLKQHVERKHENIARSLKHLCNVCGKGAGSRAELDIHMRTHSDEKTYECDKCGIKYKSRAGLTHHVKTTHLNIKPYSCTVCSQRFALKATLATHMRTHTGEKPFRCVICEKSFSQKSSLRTHMKLVHSNVVLYTDIKNSNDDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00333157;
- 90% Identity
- -
- 80% Identity
- -