Ccar018926.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:2177806-2179955[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2 43 5.2 7.8 1 23 118 141 118 141 0.97 2 13 0.015 0.32 11.9 3.8 2 23 147 168 147 168 0.98 3 13 4.1e-05 0.00089 20.0 4.3 2 23 170 191 169 191 0.96 4 13 0.21 4.6 8.3 1.7 2 23 205 225 204 225 0.95 5 13 0.0045 0.098 13.5 2.7 2 23 233 255 232 255 0.97 6 13 0.00022 0.0047 17.7 0.4 1 23 264 286 264 286 0.92 7 13 5.7e-06 0.00012 22.7 1.2 1 23 292 315 292 315 0.98 8 13 0.018 0.38 11.7 0.6 2 23 326 346 325 346 0.96 9 13 0.16 3.4 8.7 2.5 2 23 354 376 353 376 0.95 10 13 0.0079 0.17 12.8 0.1 3 23 387 407 385 407 0.96 11 13 8.6e-05 0.0019 19.0 1.8 1 23 413 436 413 436 0.98 12 13 2.4e-05 0.00053 20.7 1.2 1 23 442 464 442 464 0.99 13 13 1.3e-06 2.8e-05 24.7 0.6 1 23 470 493 470 493 0.96
Sequence Information
- Coding Sequence
- ATGGATATTAAAAATGTATTAAGTAAAACAGATTTTATAAAAATATGTCGAATTTGTTTAAAACAATCCGATAATTTAATATCAATAACATTATATCAAATTATTGAAATGATAAGCACATGTACTTCAGTAAAAATATGGATTCATGACGAATTACCGAATCAAATATGTGCGACTTGTTTAGATGACCTTCAGAACGCGTTTAAATTCAAACAAACCGCGGAATCATCAGACATTGAATTACGTGAAATACTTCAGAATAATATCGAAATCAATGATTTCGATGGGGATGATAAATTATCGATAAAAAGTGAAATTGAAGAAGTTCCAACGATTGAAGAAAAATTAAAATATTCTTGTGATGAATGTAATTTTACCTGTAATCATCTTCAACATTTAGGTTTACATAAAAAACGTTATCATTCCGCTAAAGGTGAACGATGTAAATTATGTAATTTAGTATTTTATCATAAATTACAGTTCGAGACACATTTAAAGTCACATAACAAATGTAAGCATTGTAATAAAGTATTTAGAACGTCTAGTAAATTGTTACGTCATAGTTTAGTACATGCTACAAATCGTACAAATTCTTCAACGGATGAACGTATCCCTTGCTCCGTATGCGGTAAACATGTCGTAAAACGTCATATTAAACGGCATTTAAACGTACATAAAAATAATCGCGATTTAATAAAATGCCCACGCTGTGATAGAAAATTCTTACATCAGAGTTCAATTAAAACTCATATACGTCGAGATCATGAAAGAATCGCACATGAATTGAAATATTTATGTAACACGTGCGGTAAAAAGTTTAGCTCACGTATCGGACTCGAACGTCATAGTGTAGTTCATAAACCAGATCGGCCGTATGAATGTACCGAATGTGGGCAAGCGTTCAAATTAAATTTTTCACTAACCAAACACATTAAAACGAAACATAGCAATATCAACGTGTACCATGTTCGAATCCCATGTAAAATTTGTTCGAAACAAATATCAAAAACAAATATGCAAACGCACATGAGAATTCATAAAAATAATCGAAATCTAATAAAATGTTCACAATGTTCGAAAACATTTCTACATGAAATCTCACTGAAACAACACGTTGAACGTAAACATGAGAATATTGCGCGTAGTTTAAAACATTTATGTAATGTTTGCGGTAAAGGAGCTGGCTCCCTGGCGGAATTAGATTTACATATGCGTACGCATAGCGATGAGAAAACATTCGAATGTGATAAATGTGGCATGAAGTATAAATCACGAGCGGGTTTAACGCATCACGTTAAAACGATGCATTTAAATATAAAACCGTATACGTGTACGGTGTGCTCACAACGTTTTGCGTTACGTGCAACTTTAACGACACACATGCGTACACATACAGGTGAGAAACCGTTTAGTTGTGTTATATGTGAAAAACCGTTTAGTCAGAAATCATCGTTACGGACTCATATGAAACTTGTACACTCAAATGTGGTTTTGTATACGGATGTTAAAAATACTAATATCGACGATTTAAAAAGTCTTTAA
- Protein Sequence
- MDIKNVLSKTDFIKICRICLKQSDNLISITLYQIIEMISTCTSVKIWIHDELPNQICATCLDDLQNAFKFKQTAESSDIELREILQNNIEINDFDGDDKLSIKSEIEEVPTIEEKLKYSCDECNFTCNHLQHLGLHKKRYHSAKGERCKLCNLVFYHKLQFETHLKSHNKCKHCNKVFRTSSKLLRHSLVHATNRTNSSTDERIPCSVCGKHVVKRHIKRHLNVHKNNRDLIKCPRCDRKFLHQSSIKTHIRRDHERIAHELKYLCNTCGKKFSSRIGLERHSVVHKPDRPYECTECGQAFKLNFSLTKHIKTKHSNINVYHVRIPCKICSKQISKTNMQTHMRIHKNNRNLIKCSQCSKTFLHEISLKQHVERKHENIARSLKHLCNVCGKGAGSLAELDLHMRTHSDEKTFECDKCGMKYKSRAGLTHHVKTMHLNIKPYTCTVCSQRFALRATLTTHMRTHTGEKPFSCVICEKPFSQKSSLRTHMKLVHSNVVLYTDVKNTNIDDLKSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01061037;
- 90% Identity
- -
- 80% Identity
- -