Nfla001237.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986040.1:21870256-21878135[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0084 0.31 12.1 0.8 1 23 214 237 214 237 0.96 2 15 0.21 7.9 7.7 1.2 1 23 243 265 243 265 0.94 3 15 0.00011 0.004 18.1 3.0 1 23 274 296 274 296 0.97 4 15 0.0016 0.061 14.3 0.8 1 21 302 322 302 323 0.92 5 15 0.16 5.8 8.1 2.9 2 23 368 390 367 390 0.95 6 15 0.00072 0.027 15.5 0.6 1 23 397 420 397 420 0.96 7 15 0.002 0.075 14.1 3.6 1 23 432 454 432 454 0.98 8 15 0.007 0.26 12.4 4.5 1 23 460 482 460 482 0.97 9 15 4e-06 0.00015 22.6 1.2 2 23 492 513 491 513 0.98 10 15 0.11 3.9 8.7 0.9 1 23 522 545 522 545 0.94 11 15 1.4e-05 0.00053 20.8 1.4 3 23 555 575 553 575 0.97 12 15 1.1e-06 4.1e-05 24.3 1.7 1 23 581 603 581 603 0.98 13 15 0.00016 0.0058 17.6 0.5 1 23 609 631 609 631 0.96 14 15 4.6e-05 0.0017 19.2 3.2 1 23 637 659 637 659 0.98 15 15 0.00059 0.022 15.8 2.1 1 23 665 688 665 688 0.96
Sequence Information
- Coding Sequence
- atGACATCTGAGAATTTTTGTCGTTTGTGTGGATTAAAATTACctttatcatatttaaaaacattagccgatttaaaaaatgaacaattgGATACACTTATATCTCAATATTTACGCCTTGAAATGAAAGAAACTAATGAATATCCACATACTGCATGTAATTTATGTTGTAAAACTGTATTTGATTTTCATGAATTTACATTAATGGTACAAAATGTCCAGCAAAAGTTTCGACAATCATTTTCATCATCTAGTTCTACTCCTGTAGGTATATTTACAGACTCAAgtattaaattagaaaatgaaaCGCAACATACAACATACCCATTACCAATCGATTCATCTAATAGTGATTCAAAACATGTTAAAACTGAAGAGGATTACGtgaataattttcataattttgatggTTTTACAAATGATTTCAATACTGATTCGCACGATTCAGACGAATTTATCTTAGAACGAACAGCAAGTGATATTAAGTCAGaaaatttggaaaaaatctaTCAAGatataattacaaataacaAAGAAGAAGATGTATCcacaaaattagaaaattctacttcgaataattacaaaaatgagaataataaaataaatcatacaaTAAAACGACGATCATTGCATACTCAATTTAAATGCTATAAATGTGATTACATTGTAAACACCGCCAAGGATTTGCAAGATCATTTTCAAGTGACACACAATTCAAAAGCTGAATATGTCTGTACAGAGTGTCAAGCATTATTTAGTAATTTACAAGAATTTGAATTGCATTTTCATgaacataaaaacataaaacgaCGTAAAATACATACATGCGAATTTTGTggcaaacaatttaataatgcaaccaattatAAGGCTCATCGTAATTTACATTTAGgcATCAAACCATTTGAATGTGAAGTATGTGGTAAAACGTTTCGTCTAAAACGACATAAAGAAGTACATCGTATCACAGTATGTTCAAAACCTAAAAAACATGATTCAGACAGTCAAGATGGTGGTACAACAGATGGTGATTTAAAATTAGTAATTGATTTAGATGACAATCGAAAATCATCAAAACAACCggaatttaaatcaaaatggaAATGTGACAAATGTGATGAATACTTTCATAGTgaacatattttacaaaaacatataaaaaatgttcatattACGGAAGCACCGGAATATAATTGTAACGATTGTAATGAAATATTCGatagtaattataaatatgataaacATTTACGTGCCGTGCATGGTATTAAAAAGAAACAGAAGAAAGGTTCAACATATAAGTGTGATAAGtgtttaaaagaatttaatcaCAAAACAAATTATGATAATCACTTATTAATACATTCTGGAATAAAACGATTTTCATGTGAGAAATGTGgtagaaaatttcatttaaaacaacATTTAGTCGCACATTCATTAACACATTTAGATATAAATAAAGCTGATGAAGTGAAATGTGAAACTTGTGAGAAAatGTTTAAAAATCAGGATGTATTGAATCGACATTTGCGCACACACATACCGAAGAATGAAcgttatatatacaaatgtgaTAATTGTAGCCAACGTTTTGAGACTATTGAGAAAAAAGAAGCGcatcaaattaataaacatgAAAacgaaaaagaaaaagaatcaaTTTGCGATCAGTGtggaaaagtatttaaaaatatccatCAATTATCGTGGCATTTAAAGACACACAGTGATATTTCACCTTATAAATGCGATGAATGTTCTAAAGTATTTAGAAGTAAGTCcggattaaaaaaacataaattgatACATACCGGTGAGAAACCATTCGAATGTGAAGTATGCGGCAAACGATTTCGTTTAAAACAAATGTTAACAGTACACTCATCGATTCATTCAAACGAATTACCATTTGAGTGTACAGTATGTACGAAGAAATTTCGGAAAAAAGACTTTCTAAAGGTACATTTGCGACAACATACTGGTGAACGACCTTACTCGTGTCTCGAATGTAATCATTCATTTGCAAATGATTCCAACtttataaaacatttgaaaGGCAAACATGGTTTACGtaatttttcaatacaaaatcaaCATCGATATCCATTTACAAATACCAATAatcaatag
- Protein Sequence
- MTSENFCRLCGLKLPLSYLKTLADLKNEQLDTLISQYLRLEMKETNEYPHTACNLCCKTVFDFHEFTLMVQNVQQKFRQSFSSSSSTPVGIFTDSSIKLENETQHTTYPLPIDSSNSDSKHVKTEEDYVNNFHNFDGFTNDFNTDSHDSDEFILERTASDIKSENLEKIYQDIITNNKEEDVSTKLENSTSNNYKNENNKINHTIKRRSLHTQFKCYKCDYIVNTAKDLQDHFQVTHNSKAEYVCTECQALFSNLQEFELHFHEHKNIKRRKIHTCEFCGKQFNNATNYKAHRNLHLGIKPFECEVCGKTFRLKRHKEVHRITVCSKPKKHDSDSQDGGTTDGDLKLVIDLDDNRKSSKQPEFKSKWKCDKCDEYFHSEHILQKHIKNVHITEAPEYNCNDCNEIFDSNYKYDKHLRAVHGIKKKQKKGSTYKCDKCLKEFNHKTNYDNHLLIHSGIKRFSCEKCGRKFHLKQHLVAHSLTHLDINKADEVKCETCEKMFKNQDVLNRHLRTHIPKNERYIYKCDNCSQRFETIEKKEAHQINKHENEKEKESICDQCGKVFKNIHQLSWHLKTHSDISPYKCDECSKVFRSKSGLKKHKLIHTGEKPFECEVCGKRFRLKQMLTVHSSIHSNELPFECTVCTKKFRKKDFLKVHLRQHTGERPYSCLECNHSFANDSNFIKHLKGKHGLRNFSIQNQHRYPFTNTNNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00333002;
- 90% Identity
- iTF_00333002;
- 80% Identity
- -