Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997755.1:72857419-72866193[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.014 0.31 12.0 0.9 1 23 213 236 213 236 0.97

2 15 0.17 3.7 8.6 1.1 1 23 242 264 242 264 0.96

3 15 0.00016 0.0035 18.1 3.0 1 23 273 295 273 295 0.97

4 15 0.0025 0.054 14.3 0.8 1 21 301 321 301 322 0.92

5 15 0.23 5 8.2 2.9 2 23 368 390 367 390 0.95

6 15 8.1e-05 0.0018 19.0 0.7 1 23 397 420 397 420 0.96

7 15 0.00073 0.016 16.0 3.9 1 23 432 454 432 454 0.98

8 15 0.0076 0.16 12.8 4.7 1 23 460 482 460 482 0.98

9 15 6.2e-06 0.00013 22.6 1.2 2 23 492 513 491 513 0.98

10 15 0.13 2.8 9.0 0.8 1 23 522 545 522 545 0.94

11 15 2.2e-05 0.00047 20.8 1.4 3 23 555 575 553 575 0.97

12 15 1.7e-06 3.6e-05 24.3 1.7 1 23 581 603 581 603 0.98

13 15 0.00024 0.0052 17.6 0.5 1 23 609 631 609 631 0.96

14 15 7.1e-05 0.0015 19.2 3.2 1 23 637 659 637 659 0.98

15 15 0.0009 0.019 15.7 2.1 1 23 665 688 665 688 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.014	0.31	12.0	0.9	1	23	213	236	213	236	0.97
2	15	0.17	3.7	8.6	1.1	1	23	242	264	242	264	0.96
3	15	0.00016	0.0035	18.1	3.0	1	23	273	295	273	295	0.97
4	15	0.0025	0.054	14.3	0.8	1	21	301	321	301	322	0.92
5	15	0.23	5	8.2	2.9	2	23	368	390	367	390	0.95
6	15	8.1e-05	0.0018	19.0	0.7	1	23	397	420	397	420	0.96
7	15	0.00073	0.016	16.0	3.9	1	23	432	454	432	454	0.98
8	15	0.0076	0.16	12.8	4.7	1	23	460	482	460	482	0.98
9	15	6.2e-06	0.00013	22.6	1.2	2	23	492	513	491	513	0.98
10	15	0.13	2.8	9.0	0.8	1	23	522	545	522	545	0.94
11	15	2.2e-05	0.00047	20.8	1.4	3	23	555	575	553	575	0.97
12	15	1.7e-06	3.6e-05	24.3	1.7	1	23	581	603	581	603	0.98
13	15	0.00024	0.0052	17.6	0.5	1	23	609	631	609	631	0.96
14	15	7.1e-05	0.0015	19.2	3.2	1	23	637	659	637	659	0.98
15	15	0.0009	0.019	15.7	2.1	1	23	665	688	665	688	0.96

Sequence Information

Coding Sequence: ATGACATCTGAGAATTTTTGCCGTTTATGTGGTTTAAAATTACCTTTATCATATTTAAAAACATTAGTCGATTTAAAAAATGAACAATTGGATACACTTATCTCACAATATTTAGGCCTTAAAATGAATGAAACAAATGAATATCCACATACCGCATGTAATTTATGCTGTAAAACTGTTTTTGATTTCCATCAATTTACATTAATGGTACAAAGTGTTCAACAAAAGTTTCGACAATCATTTTCATCATCTGGTGCGGCTGCGGTAGACGTATTTATCGATTCAAGTATTAAATTAGAAAATGAAACAAAACATACAGTGTATCCATTGCCAATTGAATCACCCAATAATGATTCTAAACATGTTAAAACTGAAGAGGATTTTGCGGATAATTTTCATAATTTTGATGGTTTTACAAATGATTTTAATACTGATTCACACGATTCCGACGATTTCATCTTAGAACGTACAGGAAGTGATATTAAATCAGAAAATTTTGAAAAAATTTATCAAGATATAATCTCAAATAATAAACAAGATGTATCAACTAAATCAGAAAATTCAACATCGAATTGTAATAAAAATGAAAATAACAAAATCAATAATACAATAAAACGACGTACATTACATACACAATTTAAATGTTACAAATGTGATTATATTGTAAACAGTGCAAAAGATTTACAAGATCATTTTAAAGTAACACATAATTCAAAAGCTGAATATGTTTGTACCGAATGTCAAGCATTATTTGATAATTTACAAGAATTTGAAAATCATTATCATGAACATACAAATGTAAAACGACGTAAAATACATACATGTGAATTTTGTGGAAAACAATTTAATAATGCTACTAATTATAAGGCTCATCGTAATTTACATTTAGGTATCAAACCATTCGAATGTGAAGTATGTGGGAAAACATTCCGTCTGAAAAGACATAAAGAAGTACATCGTATTACAGTATGTTCCAAACCGAAAAAACATGATTCAGATAGTCAAGATGGTGGAGGTACAACAGATGGTGATTTAAAATTAGTTATTGATGTAGATGATAATAAATCTTCAACAAAACAACCAGAATTTAAATCAAAATGGAAATGTGAAAAATGTGATGAATATTTTCACAGTGAACATATTTTACAAAAACATATAAAAAATGTTCATATTACGGAAACGCCTGAATATAATTGTGATGATTGTAATGAAACATTTGATAGTAATTATAAATATGAGAAACATTTACGTGCTGTACACGGGATCAAAAAGAAAAAAAAGAAAGGTTCCACATATAAGTGTGATAAATGTTCAAAAGAATTTAATCACAAGACTAATTACGATAATCATTTGTTAATACATTCTGGAATAAAACGATTTACATGTGAGAAATGCGGTCGAAAGTTTCATTTGAAGCAACATTTAGTCGCACATTCGTTAACACATTTAGATATAAATAAAGCGGATGAAGTGAAATGTGAAACTTGTGAGAAAATGTTTAAAAATCAGGATGTATTAAATCGTCATTTACGCACACATATACCGAAAAATGAACGTTATATTTACAAATGTGATATGTGTAGTCAACGTTTTGAGACTATTGAGAAGAAAGAAGCGCATCAAATTAATAAACATGAAAACGAAAAGGAGAAGGAATCGATTTGCGATCAATGTGGTAAAGTATTTAAAAATATTCATCAATTATCGTGGCATTTAAAAACACACAGTGATATTTCACCTTATAAATGTGATGAGTGTTCTAAAGTGTTTAGAAGTAAATCTGGATTGAAAAAACACAAATTAATACATACTGGGGAAAAGCCATTTGAATGTGAAGTATGTGGTAAACGATTTCGTTTAAAACAAATGTTGACAGTACATTCATCGATACATTCAAATGAGCTACCTTTTGAATGTACAGTATGCACAAAGAAATTCAGAAAAAAAGACTTCTTAAAGGTACATTTACGACAGCATACAGGAGAGAGGCCATACTCTTGTCTCGAATGCAATCATTCATTTGCCAATGATTCCAACTTTATAAAGCACTTGAAGGGGAAACATGGTTTACGTAATTTTTCAATACAAAATCAACATCGATATCCATTTACAAATACAAATAATCAACAATAG
Protein Sequence: MTSENFCRLCGLKLPLSYLKTLVDLKNEQLDTLISQYLGLKMNETNEYPHTACNLCCKTVFDFHQFTLMVQSVQQKFRQSFSSSGAAAVDVFIDSSIKLENETKHTVYPLPIESPNNDSKHVKTEEDFADNFHNFDGFTNDFNTDSHDSDDFILERTGSDIKSENFEKIYQDIISNNKQDVSTKSENSTSNCNKNENNKINNTIKRRTLHTQFKCYKCDYIVNSAKDLQDHFKVTHNSKAEYVCTECQALFDNLQEFENHYHEHTNVKRRKIHTCEFCGKQFNNATNYKAHRNLHLGIKPFECEVCGKTFRLKRHKEVHRITVCSKPKKHDSDSQDGGGTTDGDLKLVIDVDDNKSSTKQPEFKSKWKCEKCDEYFHSEHILQKHIKNVHITETPEYNCDDCNETFDSNYKYEKHLRAVHGIKKKKKKGSTYKCDKCSKEFNHKTNYDNHLLIHSGIKRFTCEKCGRKFHLKQHLVAHSLTHLDINKADEVKCETCEKMFKNQDVLNRHLRTHIPKNERYIYKCDMCSQRFETIEKKEAHQINKHENEKEKESICDQCGKVFKNIHQLSWHLKTHSDISPYKCDECSKVFRSKSGLKKHKLIHTGEKPFECEVCGKRFRLKQMLTVHSSIHSNELPFECTVCTKKFRKKDFLKVHLRQHTGERPYSCLECNHSFANDSNFIKHLKGKHGLRNFSIQNQHRYPFTNTNNQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01061022;
90% Identity: iTF_01061022;
80% Identity: -