Nfla013718.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- HIVEP1
- Assembly
- GCA_963920215.1
- Location
- OY986042.1:118043636-118049020[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00027 0.01 16.8 0.3 2 23 164 185 163 185 0.97 2 13 0.00014 0.005 17.8 3.1 2 23 194 215 193 215 0.97 3 13 0.00023 0.0086 17.0 0.5 1 23 221 244 221 244 0.98 4 13 0.00095 0.035 15.1 0.1 3 23 251 272 249 272 0.95 5 13 3.3e-05 0.0012 19.7 1.2 1 23 278 300 278 300 0.96 6 13 1.5e-05 0.00055 20.8 1.9 1 23 306 329 306 329 0.97 7 13 1.9 70 4.7 0.7 2 22 337 354 337 356 0.72 8 13 0.0028 0.1 13.6 4.1 2 23 362 384 361 384 0.97 9 13 0.0036 0.14 13.3 2.5 1 23 395 418 395 418 0.92 10 13 1.2e-06 4.6e-05 24.2 4.9 1 23 424 447 424 447 0.97 11 13 3.2e-05 0.0012 19.7 3.5 1 23 457 480 457 480 0.94 12 13 7.4e-07 2.8e-05 24.9 2.4 1 23 486 508 486 508 0.98 13 13 6.2e-07 2.3e-05 25.1 1.2 1 23 514 536 514 536 0.98
Sequence Information
- Coding Sequence
- ATGACATCTGTGTTTGATACAGAAGTTCTCAACATGTTATCACTGTGCACATCTTTAACgataacAACCGATGATGGCTTACCCCATCAGATATGTTCAACATGTTTTACAAAAGCCGTCGATTCGTTTTCGTATCGACAACAGTGTGAACATTCCGATCAATTTCTACGacagttattaataaaaactgaaGGAAAATTCGTTGCATCGACCgaagatgaaataaaaataatcacagAAGATATGATCAGCGTTAAATTAGAgacaaatgatattaaaaacgaTGATCCGGATCTAAACAGTCCCGACTTGGATGTGGATTTGGATAGTTCAGACGATGATGAAGATGATCAACATAGCGATCGAAATACACAAACAAATGATTTCCTATTGAATGCATCAAGTAAAGATGCGTTAAATAGAGGGGATACAGCACGGGTGAAGGCGATCAACATATGGGGTCTGGATAAATGTGATCCAGACACTTCCACATGTAAGATATGTAATAAAGTGTTAGTCAATACAAATTCATTGGTGCGTCACATGGAAATTCAtaatgaaaatagaaaatttaatgtagTTTGTAAAATTTGTCATAAAGGTTTTTATGAGACCGGACATTTAACAAAGCATATGTTACGGCATAAAGGTGAAGCCAGatataaatgtgaaaaatgtcCAAAAATGTTTTACGAATTAAGTGCATTAGGTATTCATTTAAAACGTCGACATAAAGTCAAACCATCGATTTGTACCGAATGTGGTAAATCATTTTTAGTTAAATTACAATTAGAGAATCATATGAGAGCTGCGCATGGCGAACAGAAGAAGTTCGTGTGCACGGAATGCGGCAAAGCGTACCATCAAGAGAGTCTGTTGCGTAAACATCAGACGGCCCACACAAATGAACGTTTGTTTCATTGTTTGCAATGTGATAAATCGTACAAAGATAAACCGAATTTAGCCAAACATATCAAACGTGCGCATCTATCGGAAACGAAACGTGAAGTTTGTACGATTTGTGGCAAATCTATTATTAATTTACAGaaacATTTAGCATACGTTCATGGCGACGAACATGTAAAATGTACAGAATGTTCTAAAGAATTTACATCAACATTCTGTTTGAACGATCACATCAAGAAGAAACACCGTAAATCAGATGTGCCACGCAAGAAACCATATTTGTGCAGTGATTGTGGGTACACGTGCGAAGGCAAATCATCATTGAAAACACACTACGAACAGAAGCACACCCAGATACGTGCCTACAAATGTACAATATGTTCCAAGTGTTTTAAAACACGTGGCGAATTAACCAAACACATACGATACACACACAACTATGATCCGCAGACAGCGAATACGCATGCGTGCAATCAATGCAACAAaacgtttaaaacaaaaagtgcATTACAATATCATGCACGTTACACGCACACAAATGAGAAACAATTTATGTGTACTGGATGTACCaaacaatttaaaactaaaGGAACATTAAAAATACACATGCGTACCCACACGGGTGAACGTCCTTTTGAATGCAAATATTGTGGCAAAACATTTGGACAAGGGAGCACACTGAAGACGCACATGAAAGTACATGGTGGTACAGGGAGTACAACACACAATATTGGTACGGAGGAGGATGCTAACAATACTGTTTGTGATACAAATCATGATGATGGGGGGAATAATACAATGCAAGTGATCATGGATCTACCAGCAGCATCTCGACGAGCAGGAGTCGAGTCCATCGTAACATCATCATCTGGTGGTGGTGTAGCTGTAGCCGTTACGACTGAACCGACGACATCGATTGCAAAACATTCGACGGAGGATGACGACGAACATGTTGAAAAGTATTTGATTAGTTTGTAA
- Protein Sequence
- MTSVFDTEVLNMLSLCTSLTITTDDGLPHQICSTCFTKAVDSFSYRQQCEHSDQFLRQLLIKTEGKFVASTEDEIKIITEDMISVKLETNDIKNDDPDLNSPDLDVDLDSSDDDEDDQHSDRNTQTNDFLLNASSKDALNRGDTARVKAINIWGLDKCDPDTSTCKICNKVLVNTNSLVRHMEIHNENRKFNVVCKICHKGFYETGHLTKHMLRHKGEARYKCEKCPKMFYELSALGIHLKRRHKVKPSICTECGKSFLVKLQLENHMRAAHGEQKKFVCTECGKAYHQESLLRKHQTAHTNERLFHCLQCDKSYKDKPNLAKHIKRAHLSETKREVCTICGKSIINLQKHLAYVHGDEHVKCTECSKEFTSTFCLNDHIKKKHRKSDVPRKKPYLCSDCGYTCEGKSSLKTHYEQKHTQIRAYKCTICSKCFKTRGELTKHIRYTHNYDPQTANTHACNQCNKTFKTKSALQYHARYTHTNEKQFMCTGCTKQFKTKGTLKIHMRTHTGERPFECKYCGKTFGQGSTLKTHMKVHGGTGSTTHNIGTEEDANNTVCDTNHDDGGNNTMQVIMDLPAASRRAGVESIVTSSSGGGVAVAVTTEPTTSIAKHSTEDDDEHVEKYLISL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332973;
- 90% Identity
- -
- 80% Identity
- -