Ccar007506.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- HIVEP1
- Assembly
- GCA_905475395.1
- Location
- FR997757.1:838489-844294[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00044 0.0096 16.7 0.3 2 23 200 221 199 221 0.97 2 13 7.3e-05 0.0016 19.2 1.4 2 23 230 251 229 251 0.97 3 13 0.00038 0.0082 16.9 0.5 1 23 257 280 257 280 0.98 4 13 0.0025 0.054 14.4 0.1 2 23 286 308 285 308 0.95 5 13 6e-05 0.0013 19.4 1.1 1 23 314 336 314 336 0.96 6 13 2.4e-05 0.00052 20.7 1.9 1 23 342 365 342 365 0.97 7 13 3 66 4.6 0.7 2 22 373 390 373 392 0.72 8 13 0.0046 0.098 13.5 4.1 2 23 398 420 397 420 0.97 9 13 0.006 0.13 13.2 2.5 1 23 431 454 431 454 0.92 10 13 2.2e-06 4.7e-05 24.0 5.1 1 23 460 483 460 483 0.97 11 13 8.7e-05 0.0019 18.9 3.3 1 23 493 516 493 516 0.95 12 13 1.1e-06 2.4e-05 24.9 2.0 1 23 522 544 522 544 0.98 13 13 1e-06 2.2e-05 25.0 1.2 1 23 550 572 550 572 0.98
Sequence Information
- Coding Sequence
- ATGAAATATACAAATATGAATCATAATTATTTAACTAAAAATGATTTTCATAAAATATGTCGAACTTGTTTAAATTCTAGTGAGAATATGACATCTGTCTTTGATACAGAAGTTCTCAACATGTTATCGCAGTGTACTTCCTTAACGATAAGTTGTGACGATGGATTACCTCATCAAATCTGCTCAACATGTTTTACAAAAACCGTCGATTCATTTTCATACCGGCAACAATGTGAACATTCCGATCAATTTTTACGTCAATTATTAATCAAAAATGAAGGAAAATTCACATCAACAGATCACGATGAATTTAAAAGCGAGATCATCGACGAGAATACTATTAATGTGAAATTAGAAACGAATGATATTAAAAATGATGATACAGATTTAAACAATCAAGGTTTAGTAGATCTTGAGGACACATCTTTGTCATCAGCAGACGATGACAAAGATGACGACGAAATATTAACGCACACAAATGATTTTCTATTGAATACATCCAATAAAGTAGTAGACAGTTTAAATAGGGATAGGGATACAGCACGAGCGAAGGCACTTAACATGTGGGGCTTAGATAAGTGCGATCCAGACACTTCAACATGTAAAATTTGTAATAAAGTATTAGTGAACACGAATTCATTAGTGCGGCACATGGAAATCCATAATGAAAATAGAAAATTTAATGTAGTTTGTAAAATTTGTAATAAAGGTTTTTATGAAACGGGACATTTAACGAAACATATGTTACGGCATAAAGGCGAAGCCAGATATAAATGTGAAAAATGTCCGAAAATGTTTTATGAATTAAGTGCATTAGGTATCCATTTAAAACGTCGCCATAAAGTAAAACCATCGGTATGTGGTGAATGTGGTAAATCGTTTCTAGTAAAATTACAATTAGAGAATCACATGAGAGCTGCACATGGTGAACAAAAGAAGTTTGTTTGCTCGGAATGTGGTAAAGCGTATCATCAAGAAAGTTTGTTACGTAAACATCAAACGGCGCACACAAATCAACGATTGTTTCATTGTTTGCAATGTGATAAATCGTATAAAGATAAACCGAATTTGGCCAAACATATTAAACGGGCACATTTATCTGAAACAAAACGTGAAGTTTGTACGATCTGTGGCAAGTCTATTATTAATTTACAGAAACATTTAGCGTATGTGCATGGCGACGAACATGTTAAATGTACAGAATGCTCCAAAGAATTTACATCAACATTTTGTTTAAATGATCATATCAAGAAGAAACATCGTAAATCGGATGCACCACGAAAAAAACCATATTTGTGTAGTGATTGTGGTTATACGTGCGAAGGCAAATCATCATTAAAAACACATTACGAACAAAAACATACACAAGTACGTGCATATAAATGTACAATATGTACAAAATGTTTTAAAACACGTGGCGAATTAACAAAACATATACGTTATACACATAATTATGATCCACATACGGCGAATACACATGCTTGCGATCAATGTACGAAAACGTTTAAAACAAAAAGTGCGTTACAATATCATGTACGATACACGCACAGTGATGAGAAACAATTTATATGTACCGGATGTACCAAACAATTTAAAACTAAAGGTACATTAAAAATACATATGCGTACGCACACAGGAGAGAGACCGTTTGAATGTAAATATTGTGGTAAAACATTTGGACAGGGGAGTACATTAAAAACACACATGAAAGTACATGGTGGTGGTGCTGGTAATGGTACAGGAAGTACAAACTCGACTAATGATGTTGGTAATATTATTTGTAACACAAGCAACGAAACAAATAATACAACAACAATGCAAGTTATAATGGAAGCACAACAGACTCAGGCAGCAGCATCTATTCAAGTTGAATCGTTGGTAACGACATCTGTGGTAGCTGCTGGTACAACAACAATAGTGACACCTATAGAGAAACATTCAAATACAACGGACAACGATGATGAACATGTTGAAAAGTATTTGATCAGTTTATGA
- Protein Sequence
- MKYTNMNHNYLTKNDFHKICRTCLNSSENMTSVFDTEVLNMLSQCTSLTISCDDGLPHQICSTCFTKTVDSFSYRQQCEHSDQFLRQLLIKNEGKFTSTDHDEFKSEIIDENTINVKLETNDIKNDDTDLNNQGLVDLEDTSLSSADDDKDDDEILTHTNDFLLNTSNKVVDSLNRDRDTARAKALNMWGLDKCDPDTSTCKICNKVLVNTNSLVRHMEIHNENRKFNVVCKICNKGFYETGHLTKHMLRHKGEARYKCEKCPKMFYELSALGIHLKRRHKVKPSVCGECGKSFLVKLQLENHMRAAHGEQKKFVCSECGKAYHQESLLRKHQTAHTNQRLFHCLQCDKSYKDKPNLAKHIKRAHLSETKREVCTICGKSIINLQKHLAYVHGDEHVKCTECSKEFTSTFCLNDHIKKKHRKSDAPRKKPYLCSDCGYTCEGKSSLKTHYEQKHTQVRAYKCTICTKCFKTRGELTKHIRYTHNYDPHTANTHACDQCTKTFKTKSALQYHVRYTHSDEKQFICTGCTKQFKTKGTLKIHMRTHTGERPFECKYCGKTFGQGSTLKTHMKVHGGGAGNGTGSTNSTNDVGNIICNTSNETNNTTTMQVIMEAQQTQAAASIQVESLVTTSVVAAGTTTIVTPIEKHSNTTDNDDEHVEKYLISL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01060986;
- 90% Identity
- -
- 80% Identity
- -