Basic Information

Insect: Nineta flava
Gene Symbol: -
Assembly: GCA_963920215.1
Location: OY986045.1:58894409-58896133[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00038 0.014 16.3 2.1 1 23 77 99 77 99 0.96

2 17 0.0003 0.011 16.6 1.8 1 19 105 123 105 127 0.96

3 17 0.002 0.076 14.1 4.6 1 23 133 155 133 155 0.97

4 17 0.0011 0.041 14.9 5.1 1 23 165 187 165 187 0.95

5 17 1.4e-05 0.00052 20.8 0.6 1 23 193 215 193 215 0.98

6 17 0.00095 0.035 15.1 2.1 1 23 221 243 221 243 0.98

7 17 0.0033 0.12 13.4 5.4 1 23 249 272 249 272 0.94

8 17 1.5e-05 0.00056 20.7 3.6 1 23 276 299 276 299 0.98

9 17 0.0071 0.26 12.3 0.7 1 23 301 323 301 323 0.96

10 17 2.4 91 4.4 0.9 1 10 329 338 329 349 0.86

11 17 1.3e-05 0.00049 20.9 0.6 1 23 361 383 361 383 0.96

12 17 0.00017 0.0064 17.4 1.8 1 23 384 406 384 406 0.99

13 17 0.057 2.1 9.5 0.6 1 19 412 430 412 434 0.93

14 17 0.0021 0.078 14.0 3.7 1 23 440 462 440 462 0.95

15 17 0.00012 0.0043 18.0 1.8 1 23 468 490 468 490 0.97

16 17 0.0002 0.0075 17.2 0.9 2 23 500 521 499 521 0.97

17 17 2.3e-05 0.00084 20.2 0.1 2 23 529 550 528 550 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00038	0.014	16.3	2.1	1	23	77	99	77	99	0.96
2	17	0.0003	0.011	16.6	1.8	1	19	105	123	105	127	0.96
3	17	0.002	0.076	14.1	4.6	1	23	133	155	133	155	0.97
4	17	0.0011	0.041	14.9	5.1	1	23	165	187	165	187	0.95
5	17	1.4e-05	0.00052	20.8	0.6	1	23	193	215	193	215	0.98
6	17	0.00095	0.035	15.1	2.1	1	23	221	243	221	243	0.98
7	17	0.0033	0.12	13.4	5.4	1	23	249	272	249	272	0.94
8	17	1.5e-05	0.00056	20.7	3.6	1	23	276	299	276	299	0.98
9	17	0.0071	0.26	12.3	0.7	1	23	301	323	301	323	0.96
10	17	2.4	91	4.4	0.9	1	10	329	338	329	349	0.86
11	17	1.3e-05	0.00049	20.9	0.6	1	23	361	383	361	383	0.96
12	17	0.00017	0.0064	17.4	1.8	1	23	384	406	384	406	0.99
13	17	0.057	2.1	9.5	0.6	1	19	412	430	412	434	0.93
14	17	0.0021	0.078	14.0	3.7	1	23	440	462	440	462	0.95
15	17	0.00012	0.0043	18.0	1.8	1	23	468	490	468	490	0.97
16	17	0.0002	0.0075	17.2	0.9	2	23	500	521	499	521	0.97
17	17	2.3e-05	0.00084	20.2	0.1	2	23	529	550	528	550	0.95

Sequence Information

Coding Sequence: ATGGAAAATTCAAACGATAATGATTGCTTTGAAATTCCAATAAAAACCGAATGTATCGATGTAGACAGCAATTTACATCCCGACTACAATGAAGTGGAGAAAAAAGAAGTGATAACcgatgatgatgattatgaaGATGAACAAGCTAGTAGTTCCGACAGTTCCAGTGATGTTCCATTGCAAaaacgacaaaaaaaatttcgtacaaGATCAACAGAAACAAGTGACTATCGATGTGCaatatgtaacaaaaaatttacaacaaaagcTAGcttaaaatttcatgaaatgCGACATcgtggagaaaaaccttttaaaTGTACTAAATGtgacaaaagttttttaacaaaatcacTATTAACACGGCATTCACCGGTACACACCGGTAAACGGGCATATAAATGTACAGAgtgttcaaaaacatttaaatatagtGCGCATTTAAGTTTTCATCAAGAATCTCATATTGAAAATACTCCAGAATTAAAACCTCATAAATGTACGTATTGTTCGAAAATTTTCGCTAAATCGGGAAATTTACGAACCCATGAACatcaacataaaaaaaagaattcacATAAATGTAATTTATGTCCAAAAACATTTAGTGCTCCCGAAGGATTACGTAATCATTTGATAACACATACCGGAATTAAGCGATTCAAGTGTGATCAATGCGATAAGCGATTCTTTTTAAAGCGTTTGTTAGAATCGCATAAATTAATCCATAGTGATGTGAAACAATTTCACTGTTCGAAGTGTGAGAAAGCTTTTACGCATCGCGCAAGCTTAAAGTATCATGAAAATCAAACCCACAATCGGCCATACAAGTGTGATCAATGCGATAAATCGTTTTcccataaattattatttgaacggCATAAACGTGTCGGCCATTCATTTGTCTGTAAATACTGCGATGGAAAATTTGGGAAAAAATCACTTCGACGTCATGTCGCAACTGTCCATAAAGGTGAAAATCCGTATAAATGTTCTTATTGCGATGCAGCTTTTCTATGTCGAAAAGATTTGATCGAACATAAATTACAAATGAAAAAAGGGGATGACTCCCATgggaaatatttatgtaaatggtgtaaaaaaagttttgcgaCAAGGGCTGCATTGCGAGTCCATAAACGAGTCCATTTTAAATGTAATCTTTGTGAAAAAACCTTCAAAGGAATTACGGCATATAAAAAGCATCAAATCACGCATACTGAACATAGACCGCACGAATGTATGTTTTGTGGCCGGAAATACGTCACCGAAGCTCAATTGGATAAGCACGAACCATCTCATATCGaggaaaaacattttcaatgtgaattttgtgacaaaacattcaAGAAAGAAACAGCGTTACACGATCATAAAACGTtacatactggagaaaaaccatacgATTGTGAAATTTGTGGTAAATTCTTTCGTTTATCCACAAATTATTATCAACATCGTAAGATCCATATGATTTCCGAGGAAAAACGAAGTATTAAATGTACAATATGTGATCGAGTTTATTTAACAAAGCGTGGTTTAAAAGATCATATGCGTAAACATACTGGTGATGAAAAACGTTGGCCATGTGGTATATGCGAAAAAACGTTTGTACGTAAGTCATCGTTACAAGAGCATGAAGCGAGACATGCACGTGTAAAAACGTATCGGGGtgaaattgttaaaaaacagtttttccaattacaaaatGCAAAAGTCGAATAA
Protein Sequence: MENSNDNDCFEIPIKTECIDVDSNLHPDYNEVEKKEVITDDDDYEDEQASSSDSSSDVPLQKRQKKFRTRSTETSDYRCAICNKKFTTKASLKFHEMRHRGEKPFKCTKCDKSFLTKSLLTRHSPVHTGKRAYKCTECSKTFKYSAHLSFHQESHIENTPELKPHKCTYCSKIFAKSGNLRTHEHQHKKKNSHKCNLCPKTFSAPEGLRNHLITHTGIKRFKCDQCDKRFFLKRLLESHKLIHSDVKQFHCSKCEKAFTHRASLKYHENQTHNRPYKCDQCDKSFSHKLLFERHKRVGHSFVCKYCDGKFGKKSLRRHVATVHKGENPYKCSYCDAAFLCRKDLIEHKLQMKKGDDSHGKYLCKWCKKSFATRAALRVHKRVHFKCNLCEKTFKGITAYKKHQITHTEHRPHECMFCGRKYVTEAQLDKHEPSHIEEKHFQCEFCDKTFKKETALHDHKTLHTGEKPYDCEICGKFFRLSTNYYQHRKIHMISEEKRSIKCTICDRVYLTKRGLKDHMRKHTGDEKRWPCGICEKTFVRKSSLQEHEARHARVKTYRGEIVKKQFFQLQNAKVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00332872;
90% Identity: iTF_00332872;
80% Identity: -