Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997754.1:114009843-114012086[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.5 11 7.1 1.3 6 23 2 19 1 19 0.93

2 17 0.00017 0.0036 18.0 1.2 1 19 25 43 25 47 0.95

3 17 0.002 0.042 14.7 4.0 1 23 53 75 53 75 0.97

4 17 0.0013 0.027 15.3 4.0 1 23 85 107 85 107 0.95

5 17 1.8e-05 0.00039 21.1 0.6 1 23 113 135 113 135 0.98

6 17 0.0012 0.026 15.3 2.1 1 23 141 163 141 163 0.98

7 17 0.0013 0.027 15.3 5.5 1 23 169 192 169 192 0.94

8 17 2.4e-05 0.00052 20.7 3.8 1 23 196 219 196 219 0.98

9 17 0.0091 0.2 12.6 0.7 1 23 221 243 221 243 0.96

10 17 0.059 1.3 10.0 0.2 1 20 249 268 249 270 0.93

11 17 1.7e-05 0.00036 21.2 0.6 1 23 281 303 281 303 0.96

12 17 2.6e-05 0.00057 20.6 1.5 1 23 304 326 304 326 0.99

13 17 0.027 0.58 11.1 0.3 1 19 332 350 332 354 0.94

14 17 0.0027 0.058 14.3 3.7 1 23 360 382 360 382 0.95

15 17 0.00015 0.0032 18.2 1.8 1 23 388 410 388 410 0.98

16 17 0.00065 0.014 16.2 0.9 2 23 420 441 419 441 0.97

17 17 1e-05 0.00022 21.9 0.2 2 23 449 470 448 470 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.5	11	7.1	1.3	6	23	2	19	1	19	0.93
2	17	0.00017	0.0036	18.0	1.2	1	19	25	43	25	47	0.95
3	17	0.002	0.042	14.7	4.0	1	23	53	75	53	75	0.97
4	17	0.0013	0.027	15.3	4.0	1	23	85	107	85	107	0.95
5	17	1.8e-05	0.00039	21.1	0.6	1	23	113	135	113	135	0.98
6	17	0.0012	0.026	15.3	2.1	1	23	141	163	141	163	0.98
7	17	0.0013	0.027	15.3	5.5	1	23	169	192	169	192	0.94
8	17	2.4e-05	0.00052	20.7	3.8	1	23	196	219	196	219	0.98
9	17	0.0091	0.2	12.6	0.7	1	23	221	243	221	243	0.96
10	17	0.059	1.3	10.0	0.2	1	20	249	268	249	270	0.93
11	17	1.7e-05	0.00036	21.2	0.6	1	23	281	303	281	303	0.96
12	17	2.6e-05	0.00057	20.6	1.5	1	23	304	326	304	326	0.99
13	17	0.027	0.58	11.1	0.3	1	19	332	350	332	354	0.94
14	17	0.0027	0.058	14.3	3.7	1	23	360	382	360	382	0.95
15	17	0.00015	0.0032	18.2	1.8	1	23	388	410	388	410	0.98
16	17	0.00065	0.014	16.2	0.9	2	23	420	441	419	441	0.97
17	17	1e-05	0.00022	21.9	0.2	2	23	449	470	448	470	0.95

Sequence Information

Coding Sequence: ATGTGTAGTAAAAAGTTTACAACAAAAGCTAGCTTAAAATTTCATGAAATGCGACACCGTGGCGAAAAACCATTTAAATGTAATAAATGTGACAAAAGTTTCTTAACAAAATCACTTTTAACACGACATGCTCCAGTACATACCGGGAAACGAGCCTATAAGTGTGATGAGTGTTCAAAAACTTTCAAATACAGTGCGCATTTAAGTTTTCATCAAGAATCTCACATAGAAAATACACCAGATTTAAAACCGCATAAATGTTCGTATTGTTCGAAAATCTTTGCTAAAGCGGGAAATTTACGAACTCACGAACATCAACACAAGAAAAAAAATGCACATAAATGTAATTTATGTCCAAAAACTTTTAGTGCTCCCGAAGGATTACGGAACCATTTGATAACGCATACAGGAATTAAACGATTTAAGTGTGACCAATGCGATAAGCGATTCTTTTTGAAACGTTTATTAGAATCGCATAAATTGATCCATAGTGAAGTTAAACAATTTCATTGTTCAAAGTGTGATAAAGCTTTTACTCATCGTGCAAGTTTAAAATACCATGAAAATCAGACCCACAATCGACCGTATAAATGTGATCAATGCGATAAATCATATTCCCATAAACAATTATTCGAACGACACAAACGAGTCGGACATTCGTTTGTTTGTAAATACTGTGATGGAAAATTCGGAAAAAAATCACTTCGTCGTCATGTTGCTACTGTTCATAAAGGAGAAAATCCTTATAAATGTTCGTATTGTGATGCAGCTTTTCTAAGTCGTAAAGATTTGATTGAACATAAATTACAAATGAAAAAGGGGGATGATTCTCATGGGAAATATTTATGTAAGTGGTGTAAGAAAAGTTTTGCAACAAGAGCTGCGTTGCGTGTGCATAAACGAGTTCATTTTAAGTGTAATCTTTGTGGAAAAACATTCAAAGGAATTACGGCCTACAAAAAACATCAAATAACGCATACTGAGCATAGACCGTACGAATGTATGTTTTGTGGTCGTAAATACGTAACCGAAGCTCAATTAGATAAACACGAACCATCTCATATCGAAGAGAAACACTTCCAATGTGAATTTTGTGATAAAACTTTCAAAAAAGAAACTGCTTTACATGATCATAAAACGCTACATACCGGAGAAAAACCATACGATTGTGAAATTTGTGGAAAATTCTTTCGTTTATCCACAAACTATTATCAACATCGTAAAATTCATATGATTTCTGAAGAGAAACGAAGTATTAAATGTCAAGTGTGCGATAGAGTTTATTTAACGAAACGTGGCTTAAAAGATCATATGCGTAAACATACTGGTGATGAAAAACGTTGGCCATGTAATATATGTGAAAAAACATTCGTACGGAAATCATCGTTACAAGAGCATGAAGCGAGACATCAACGTGTGAAAACATATCGGGGTGAAATTGTTAAAAAACAATTTTTCCAGTTGCAAAATGCTAAAGTTGAATAG
Protein Sequence: MCSKKFTTKASLKFHEMRHRGEKPFKCNKCDKSFLTKSLLTRHAPVHTGKRAYKCDECSKTFKYSAHLSFHQESHIENTPDLKPHKCSYCSKIFAKAGNLRTHEHQHKKKNAHKCNLCPKTFSAPEGLRNHLITHTGIKRFKCDQCDKRFFLKRLLESHKLIHSEVKQFHCSKCDKAFTHRASLKYHENQTHNRPYKCDQCDKSYSHKQLFERHKRVGHSFVCKYCDGKFGKKSLRRHVATVHKGENPYKCSYCDAAFLSRKDLIEHKLQMKKGDDSHGKYLCKWCKKSFATRAALRVHKRVHFKCNLCGKTFKGITAYKKHQITHTEHRPYECMFCGRKYVTEAQLDKHEPSHIEEKHFQCEFCDKTFKKETALHDHKTLHTGEKPYDCEICGKFFRLSTNYYQHRKIHMISEEKRSIKCQVCDRVYLTKRGLKDHMRKHTGDEKRWPCNICEKTFVRKSSLQEHEARHQRVKTYRGEIVKKQFFQLQNAKVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01060967;
90% Identity: iTF_01060967;
80% Identity: -