Basic Information

Insect: Nineta flava
Gene Symbol: -
Assembly: GCA_963920215.1
Location: OY986044.1:13004324-13012747[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00051 0.019 15.9 4.0 1 23 85 108 85 108 0.94

2 14 2.5e-05 0.00094 20.1 2.2 2 23 115 136 114 136 0.97

3 14 2.6e-06 9.6e-05 23.2 1.6 1 23 142 164 142 164 0.98

4 14 2.1e-05 0.00078 20.3 0.6 1 22 170 191 170 191 0.94

5 14 1.1e-05 0.00042 21.2 0.0 1 23 198 220 198 220 0.96

6 14 2.6e-06 9.7e-05 23.1 6.7 1 23 312 334 312 334 0.96

7 14 6.6e-05 0.0024 18.7 4.5 1 23 340 362 340 362 0.98

8 14 5.2e-05 0.0019 19.1 0.7 1 23 368 391 368 391 0.95

9 14 0.0079 0.29 12.2 2.1 1 23 403 425 403 425 0.95

10 14 4.2 1.5e+02 3.6 1.3 2 21 435 454 434 455 0.91

11 14 5.3e-05 0.002 19.0 1.1 1 23 463 485 463 485 0.96

12 14 0.0012 0.046 14.7 2.5 1 23 491 513 491 513 0.97

13 14 2.4e-05 0.0009 20.1 0.8 5 23 523 541 519 541 0.93

14 14 2e-06 7.3e-05 23.5 0.2 1 23 547 569 547 569 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00051	0.019	15.9	4.0	1	23	85	108	85	108	0.94
2	14	2.5e-05	0.00094	20.1	2.2	2	23	115	136	114	136	0.97
3	14	2.6e-06	9.6e-05	23.2	1.6	1	23	142	164	142	164	0.98
4	14	2.1e-05	0.00078	20.3	0.6	1	22	170	191	170	191	0.94
5	14	1.1e-05	0.00042	21.2	0.0	1	23	198	220	198	220	0.96
6	14	2.6e-06	9.7e-05	23.1	6.7	1	23	312	334	312	334	0.96
7	14	6.6e-05	0.0024	18.7	4.5	1	23	340	362	340	362	0.98
8	14	5.2e-05	0.0019	19.1	0.7	1	23	368	391	368	391	0.95
9	14	0.0079	0.29	12.2	2.1	1	23	403	425	403	425	0.95
10	14	4.2	1.5e+02	3.6	1.3	2	21	435	454	434	455	0.91
11	14	5.3e-05	0.002	19.0	1.1	1	23	463	485	463	485	0.96
12	14	0.0012	0.046	14.7	2.5	1	23	491	513	491	513	0.97
13	14	2.4e-05	0.0009	20.1	0.8	5	23	523	541	519	541	0.93
14	14	2e-06	7.3e-05	23.5	0.2	1	23	547	569	547	569	0.99

Sequence Information

Coding Sequence: ATGGGTGATGGCTTACCATCGTCGCTGTGTCTCGAATGTGTCAATCAATTAAACAACGcctacaattttaaaaaacaatgtgaAAAAACAGACATTTCGTTGCGTGATTGGATCaacaaacaattaaaagaaGAAACGCTGGATGAAATAAACAATGATAATACATTAGCTAGcacaaattttttgaacaatGATTTCAACGAATCCATTTCAAATGAACATGACTACTTTCTTGAAACAGAAATTCAATCACATTGTTGTGTAAATTGTCCCCAaacttttaaaactaaatatgaTTTAACATTACATCAACAAATTGACCATGTAACAAGTAAATCACTTACTtgtaaaatatgtttgaaaaaatttgaattccCTAGTCATTTAGATCGACACATGCGCATACATAACCCACCTAAGATTTACATTTGTAAAATATGTGATAAACGTTTAACAcgattagaacatttaaaacgGCATAtgattatacatttaaaaattaaaccacaTGTTTGTAATATATGTAATCGTGGCTTTAATCACCCCGATAACCTCATTAATCATCTGAAACGTTGTAAAGGTGATCGTACATATGTATGTGAGATATGTAATCGGGGTTTTAATCGTCCCGATGGTTTGGAAGCACATATGGGTAATCATGACCCAACAGTCGATGTCAAACCAATGCTAGATTCATTAGACAACATCGAACGGTATATTTTAGTACAAAATATAGAGAGCGATGAATTACATGATTTTTTTGAGCCACAAGTCGATATACATGAGACGAAGAATACtgatttaaaaatgttaaatcaaAGTAGGATTAACGATGATGATAATGATTATATTAAGCATCATGGTCATCGAACGAAACGTACAACACGTAgaagtaaaacaaatattattacaacGACCCCTGAATATGTAATACATTCGTGTAAattatgtgataaaaaatttaaacgttCCAGTCATTTAAAACGACACATGTTAGGACATGGAGAAGTGAAACCATTCAGTTGTAATTATTGCGCCAAAAAATTTACACGTCGTGATCATATGTTACGTCatattaaattacataacaCCAGCAAACAATTTAAATGTGATATTTGTAGTAAAGATTTTAATCGCAACGATCAATTAGTACAACATAAAGCTGTGCGACATGCAATTGGTGAGAAAAAATCGATCAAGAAAAAATTCCaatgtaatatttgtaataaatattttacaacggAAAAATATCGTGATACACATGTCAAAGCGCATAATGATGCACCCAAAGAGAAGGAGATTTCTTGTAAAgcatgttttcaaaaatttgaaatgaaaaaagatttacatgaacatgaaaaaaaaaatatacaatgttcaaagaaatatttatgttcAGAGTGTGGACAACGTTTTATGAAAAAGAATTATCTGGTTGTACACATGCGGCGTCATCGGGGTGAAAAACCTTATAAATGTCGATTTTGTAATAAAGGGTTTCCACGATCAACGGATGTTACGCGGCATGAAAAGTTTCATACGGGTGAAAAGAatcatttatgtattatttgtgGCAAAGGATTTGGAAGAGCATATAATTTAACATTACATATGCGAACACATACTGGCGAAAAACCATATCAATGTACATATTGTGAGGCGGCTTTTGCACAAAGTAATGATTTAAAAGCACACATTCGACGACATACTGGTGAACGCTATCACTGTAATTTGTGTTCGGATGCATTTTTAATGGGATATTTGTTGAAACAGCATAAGAAAAATATTCATGGAATTGAGTGTCAAAGTGAACGAGTCCAACCGTACAAGAAGGAAGAGAATgaaacaacattcaaaaaagaagaaattgaaTTTATTCTCCCATAG
Protein Sequence: MGDGLPSSLCLECVNQLNNAYNFKKQCEKTDISLRDWINKQLKEETLDEINNDNTLASTNFLNNDFNESISNEHDYFLETEIQSHCCVNCPQTFKTKYDLTLHQQIDHVTSKSLTCKICLKKFEFPSHLDRHMRIHNPPKIYICKICDKRLTRLEHLKRHMIIHLKIKPHVCNICNRGFNHPDNLINHLKRCKGDRTYVCEICNRGFNRPDGLEAHMGNHDPTVDVKPMLDSLDNIERYILVQNIESDELHDFFEPQVDIHETKNTDLKMLNQSRINDDDNDYIKHHGHRTKRTTRRSKTNIITTTPEYVIHSCKLCDKKFKRSSHLKRHMLGHGEVKPFSCNYCAKKFTRRDHMLRHIKLHNTSKQFKCDICSKDFNRNDQLVQHKAVRHAIGEKKSIKKKFQCNICNKYFTTEKYRDTHVKAHNDAPKEKEISCKACFQKFEMKKDLHEHEKKNIQCSKKYLCSECGQRFMKKNYLVVHMRRHRGEKPYKCRFCNKGFPRSTDVTRHEKFHTGEKNHLCIICGKGFGRAYNLTLHMRTHTGEKPYQCTYCEAAFAQSNDLKAHIRRHTGERYHCNLCSDAFLMGYLLKQHKKNIHGIECQSERVQPYKKEENETTFKKEEIEFILP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00332914;
90% Identity: -
80% Identity: -