Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997754.1:51420060-51425261[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0016 0.034 15.0 5.1 1 23 134 157 134 157 0.95

2 13 7.3e-06 0.00016 22.3 2.1 2 23 164 185 163 185 0.97

3 13 4.4e-06 9.4e-05 23.0 1.6 1 23 191 213 191 213 0.98

4 13 3.9e-05 0.00084 20.0 0.8 1 22 219 240 219 240 0.94

5 13 1.9e-05 0.00041 21.0 0.0 1 23 247 269 247 269 0.96

6 13 5.4e-07 1.2e-05 25.9 4.8 1 23 363 385 363 385 0.97

7 13 0.00012 0.0025 18.5 7.0 1 23 391 413 391 413 0.97

8 13 3.2e-05 0.00069 20.3 1.1 1 23 419 442 419 442 0.95

9 13 0.012 0.26 12.2 3.7 1 23 454 476 454 476 0.95

10 13 8.9e-05 0.0019 18.9 1.1 1 23 514 536 514 536 0.96

11 13 0.0021 0.045 14.6 2.5 1 23 542 564 542 564 0.97

12 13 4.1e-05 0.00088 20.0 0.8 5 23 574 592 570 592 0.93

13 13 3.3e-06 7.2e-05 23.4 0.2 1 23 598 620 598 620 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0016	0.034	15.0	5.1	1	23	134	157	134	157	0.95
2	13	7.3e-06	0.00016	22.3	2.1	2	23	164	185	163	185	0.97
3	13	4.4e-06	9.4e-05	23.0	1.6	1	23	191	213	191	213	0.98
4	13	3.9e-05	0.00084	20.0	0.8	1	22	219	240	219	240	0.94
5	13	1.9e-05	0.00041	21.0	0.0	1	23	247	269	247	269	0.96
6	13	5.4e-07	1.2e-05	25.9	4.8	1	23	363	385	363	385	0.97
7	13	0.00012	0.0025	18.5	7.0	1	23	391	413	391	413	0.97
8	13	3.2e-05	0.00069	20.3	1.1	1	23	419	442	419	442	0.95
9	13	0.012	0.26	12.2	3.7	1	23	454	476	454	476	0.95
10	13	8.9e-05	0.0019	18.9	1.1	1	23	514	536	514	536	0.96
11	13	0.0021	0.045	14.6	2.5	1	23	542	564	542	564	0.97
12	13	4.1e-05	0.00088	20.0	0.8	5	23	574	592	570	592	0.93
13	13	3.3e-06	7.2e-05	23.4	0.2	1	23	598	620	598	620	0.99

Sequence Information

Coding Sequence: ATGACTACAATACAAAAGTTTAATTTAGATAATATTTGTCGATCATGTAAATCTGAATCAGAACATTTACAATCAGTTTATGTAAAACTTGAAGGTTTACCATTAGTGCTAGCTGAAATGTTAATGGCATGCACCTCCATTCAGGTGGAAATGGGTGATGGTTTACCATCGTCAATGTGCCTCGATTGTGTAAATCAATTAAACAACGCATATAATTTTAAAGAACAATGTGAAAAAACAGACATATCGCTACGTGATTGGATTAACAATCAATTAACAGAAGAACCCATTGATGAAAAACAAAATGATCTATTATCGGGTACAAATTTTTTGAACAACGATAACAACGAATTCATATCAAACGAACATGATTACATTTATGAAAAAGAATTTCAATCACATTGTTGTACAAACTGCCCTCAAACATTTCCCACAAAACACGAATTACAATTACATCAACAAATCGAGCATGTAACGAACGATTCTTTAACGTGTAAAATATGTTTGAAAAAATTTGAATTTCCCAGTCATTTAGAACGACATATGCGCATCCATAATCCGCCTAAGATTTATATTTGTAAAATATGTGATAAACGTTTAACACGATTAGAGCATTTAAAACGGCATATGATTATACATTTAAAAATTAAACCGCATGTTTGTAAAATATGTAATCGCGGTTTTAATCATCCGGATAATTTAATAAATCATTTAAAACGATGTAAGGGCGATCGTACATATGTTTGTGAGATTTGTAATCGTGGTTTTAATCGTCCTGATGGTTTAGAAGCACATATGGGTAATCATGATCCTACGGTTGATGTTAAGCCTATGTTAGATTCATTAGATAATATTGAACGATATATTCTAGTACAAAATTTAGAAAATGATGACATACATGATTTTATTGAACCACAAGTCGATATACAAGAGTCGAAAAGTGTCTCTGATACAAAAATGTCAGACCAAAGTGGTATCGATGATGAAGTTAATGATTATGATGATCTTAAAAAAAGTCATCGAACGAAACATAAAAGACGGCTAAGTAAAACAAAAATTAACACAGCGTCGTCAGAATTAGTAATATATTCTTGTAAGTTATGTGATAAAAAATTTAAACGTTCAAGTCATTTAAAACGACACATGTTAGGACATGGTGAAGTAAAACCATTCTGTTGTAATTATTGTCCAAAAAAATTCACACGTCGTGATCATATGTTACGTCATATTAAATTACATAACACAACGAAACAATTTAAATGTGATATTTGTAGCAAAGATTTTAATCGTAATGATCAATTGCAACAACATAAAGCTGTACGGCATGCAATTGGTGAAAAAAAATCAATTGAGAAAAAATTTCAATGCGATGTATGTAATAAATGCTTTACAACGGAAAAATATCGTGATACACATGTTAAAGCGCATAATGATGCACCAAAAGAGAAGGAAATTTCTTGTAAAGCATGCTTTCAAAAATTTGAATGTAAAAATGATTTACAGGAACATGAAAAACAGAATATACAATGTTCAAAAAAATATTTATGTTCGGAGTGTGGGCAACGTTTTATGAAAAAAAATTATCTTGTTGTACATATGCGTCGTCATCGTGGTGAAAAACCCTATAAATGTCGATTTTGCAATAAAGGCTTCCCTCGTTCAACGGATGTTACACGCCATGAAAAGTTTCATACTGGTGAAAAAAATCATTTATGTATTATTTGCGGTAAAGGATTTGGGAGGGCATATAATTTAACATTACATATGCGCACACATACTGGAGAAAAACCATATCAATGTACATACTGTGAGGCTGCCTTTGCACAAAGTAATGATTTAAAAGCACATATTCGACGGCATACTGGTGAACGTTATCATTGTGATTTGTGTAACGATGCATTTTTAATGGGATATTTATTAAAACAGCATAAGAAAAATGTTCATGGAGTTGAGTGTCAAAGTGAACGAATTCAACCATATAAAAAAGAAGAAATCGATATTACGTTTAAAAATGAAACAATATTTAAAAGAGAAGAAACGGAATTTGTTCTCCCATAA
Protein Sequence: MTTIQKFNLDNICRSCKSESEHLQSVYVKLEGLPLVLAEMLMACTSIQVEMGDGLPSSMCLDCVNQLNNAYNFKEQCEKTDISLRDWINNQLTEEPIDEKQNDLLSGTNFLNNDNNEFISNEHDYIYEKEFQSHCCTNCPQTFPTKHELQLHQQIEHVTNDSLTCKICLKKFEFPSHLERHMRIHNPPKIYICKICDKRLTRLEHLKRHMIIHLKIKPHVCKICNRGFNHPDNLINHLKRCKGDRTYVCEICNRGFNRPDGLEAHMGNHDPTVDVKPMLDSLDNIERYILVQNLENDDIHDFIEPQVDIQESKSVSDTKMSDQSGIDDEVNDYDDLKKSHRTKHKRRLSKTKINTASSELVIYSCKLCDKKFKRSSHLKRHMLGHGEVKPFCCNYCPKKFTRRDHMLRHIKLHNTTKQFKCDICSKDFNRNDQLQQHKAVRHAIGEKKSIEKKFQCDVCNKCFTTEKYRDTHVKAHNDAPKEKEISCKACFQKFECKNDLQEHEKQNIQCSKKYLCSECGQRFMKKNYLVVHMRRHRGEKPYKCRFCNKGFPRSTDVTRHEKFHTGEKNHLCIICGKGFGRAYNLTLHMRTHTGEKPYQCTYCEAAFAQSNDLKAHIRRHTGERYHCDLCNDAFLMGYLLKQHKKNVHGVECQSERIQPYKKEEIDITFKNETIFKREETEFVLP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01060964;
90% Identity: -
80% Identity: -