Nfla013273.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- bab1
- Assembly
- GCA_963920215.1
- Location
- OY986042.1:97553662-97570975[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.9e-12 1.3e-08 35.0 0.0 2 39 588 626 587 630 0.90 2 4 3.6e-13 1.2e-09 38.3 0.1 1 39 641 679 641 682 0.95 3 4 7e-19 2.3e-15 56.5 0.0 1 45 696 741 696 741 0.97 4 4 2.1e-19 6.9e-16 58.2 0.0 1 42 748 790 748 792 0.96
Sequence Information
- Coding Sequence
- ATGCATTGTGGTTTCGTAGGTGAATATCGTTTTTTCCGGTATATGAAACCACCatCAAAACCACGCGAAATTATATCTGGCAAATATTTGGATGAAGAATATCATACACCATTATCTTCAAAAAATATATGCGGTGACCTTGATTTTGAAAAACAGGACAATATGGCGATACACACGCTAAATGAACAGCATAATTATGAACAACGTGTTGAGAATACTTACAACAATCAACATTATTGTTTAAGATGGAATAATTATCAAACAAATATGACATCTGTATTTCATCAACTGTTACAAAATGAGGCATTTGTTGATGTTACATTAGCATGTAATGACCTCTCATTAAAAGCACATaagGTGGTTTTATCTGCATGCtcaacatattttcaaaaattattattagaaaatccTTGTAAACATCCCACAATTATAATGCCACAAGATGTATGTTACGCAGATTTAAAATTCATCAtagaatttgtatatagaggtgaaaTTGATGTTTCACAAGAAGAATTACagtcattACTGAAAACTGCCGACCAATTAAAAATCAAAGGTTTATGTGAAATACCTGGAACAACAGATCATGCAATCGTTCCCACtaccattaataataatacaataattaatgataaatataATCAAGATACATCATTTATACACCATACACAACAACAAAATCATCGAATAGAATTATCACCAGTTCCAATTGTATCACGGCGTGCATATTCAAAATTACGACGAATTACAACAACGGCAAATAAACGTTTACACGGGAAATATCGTTTACTTTCACCAAAACGGAATTTAAAAGATATCACTCATATTACAGGAGATTCACCAGAAAATTGTAAAACAGAATCGAACAGTACACTACTTAAAGCAAACAGTGAACAACGTTTTTGTGATCAATCTGTAGATGAGGATGAGAAAGAACATAAAATGCCCGCAGTGCTGATGGTCAACGACGAAAAAGTGACGAACGGGGAAGGTTGTGgaggTTCTTTAGACGAGGAAAGTCTTCCAATAAAACGTGAAACACTGGATCGTATAACAGACAATAACGGCGATCATCATTGTGATCGCGATAATTTGTGGTCACCAGCTGGTAGCAGCGATAGTGGCGGTAGTAATCAACCGTTAAATATGACCGGCCATGGTTTATTACCTTCACAAACATTATTCCCTGGTCACGTTGAATTACCTCCAGAGCCTCCAGCACCTTCAGCGACGCCAGTACCATGTCCACCTCAGGAATTAATTCATAATTCCCATACTGTTAATTTAACTCATTGTTCGCCAACAACTCATCATGACCTAAGTGACACAAATATGTCGGTACAAGATGTCGGTGGTATGCATTGTGGAAGCATGTCAAGTTATGGCGAAGATGTTAAAGTGAAATTTGAAACACTACGATCGGTAGATTCGGCTGGTGATATTGATGCATGCAGTCGTATGTCCCAAGAAAGTAGTGATTCGATGCGGCAGCATCAGTCGAGTATGATGATCACACCCCAACTATTAGGTTTATTACCGGGATCGTCAGATTTGAGCATGTCCGATTCATCTTCACGAATTAAAACTAATGGTCATAATAATTCCCATGCGTTTAATATAATGCCTTTACAAAATCATTCACAATCGCATGGTATAAATAATGGTATGAATACAAGTTCGGGTTCTACTTCTTCCTCGGTGGTAGGGTCTGGCGGTAGTCATCCTGGTGGTGTTGGTGGTGGGCCCAAAACATGGAGTCAAGAGGACATGGAACTTGCCTTAGATGCATTACGAAATCATAATATGAGTTTAACAAAGGCATCAGCTACTTACGGCATTCCATCAACTACCTTATGGCAACGCGCACATCGTTTAGGTATTGATACACCCAAAAAAGAAGGTCCCACAAAATCATGGACGGAAGATAGTTTAAATTCGGCATTAGAAGCATTAAGAACTGGTACAATATCAGCAAATAAAGCCAGCAAAGCGTATGGGATACCAAGCAGTACATTATACAAAATTGCAAGACGTGAAGGTATACGTTTAGCTGCTCCATTTAATGCAGCACCTACAACATGGTCCCCGGATGATTTAGAACGAGCGTTAGAATCAATACGGTCTGGACAAACTTCAGTACAAAGAGCTTCCACTGAATTTGGTATACCAACTGGTACCTTGTATGGACGTTGTAAACGAGAAGGTATTGAACTATCACGATCAAATCCCACACCTTGGTCAGAAGATGCAATGGGCGAGGCATTAGAAGCAGTcagAGTGGGTCAAATGTCGATAAATCAAGCTGCCATACACTACAATCTACCTTATTCATCACTCTATGGCCGTTTCAAACGTGGCAAATACGATAATGACAGTCCACAAATGAATAGTGGTATGCCACAGTCATTATTAGATTCAAATAGCCATGAAAATACAAATTCAATGCATGCAACCGACCATCAACATCAATTAATGCAACAATATGCTTCTGTTTCACAACAAATGAATGCAAATCAACATTCGATGGTGTCAGAAAATCAACAACATCAGCAACaacaaaatcaacaacaaacaCAACCCGCACAACAGCCGCCACAACATCAACATCCACAACAACACCAAAATCAACAACAATTTGTTCCGCATGGTAGCATAAGCTGA
- Protein Sequence
- MHCGFVGEYRFFRYMKPPSKPREIISGKYLDEEYHTPLSSKNICGDLDFEKQDNMAIHTLNEQHNYEQRVENTYNNQHYCLRWNNYQTNMTSVFHQLLQNEAFVDVTLACNDLSLKAHKVVLSACSTYFQKLLLENPCKHPTIIMPQDVCYADLKFIIEFVYRGEIDVSQEELQSLLKTADQLKIKGLCEIPGTTDHAIVPTTINNNTIINDKYNQDTSFIHHTQQQNHRIELSPVPIVSRRAYSKLRRITTTANKRLHGKYRLLSPKRNLKDITHITGDSPENCKTESNSTLLKANSEQRFCDQSVDEDEKEHKMPAVLMVNDEKVTNGEGCGGSLDEESLPIKRETLDRITDNNGDHHCDRDNLWSPAGSSDSGGSNQPLNMTGHGLLPSQTLFPGHVELPPEPPAPSATPVPCPPQELIHNSHTVNLTHCSPTTHHDLSDTNMSVQDVGGMHCGSMSSYGEDVKVKFETLRSVDSAGDIDACSRMSQESSDSMRQHQSSMMITPQLLGLLPGSSDLSMSDSSSRIKTNGHNNSHAFNIMPLQNHSQSHGINNGMNTSSGSTSSSVVGSGGSHPGGVGGGPKTWSQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEDSLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPDDLERALESIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDNDSPQMNSGMPQSLLDSNSHENTNSMHATDHQHQLMQQYASVSQQMNANQHSMVSENQQHQQQQNQQQTQPAQQPPQHQHPQQHQNQQQFVPHGSIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332263;
- 90% Identity
- iTF_00332263;
- 80% Identity
- iTF_01060830;