Ccar008993.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- bab1
- Assembly
- GCA_905475395.1
- Location
- FR997757.1:42686803-42704432[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-11 1.1e-08 35.0 0.0 2 39 574 612 573 616 0.90 2 4 1.3e-12 1.1e-09 38.3 0.1 1 39 627 665 627 668 0.95 3 4 2.5e-18 2.1e-15 56.6 0.0 1 45 682 727 682 727 0.97 4 4 7.5e-19 6.1e-16 58.2 0.0 1 42 734 776 734 778 0.96
Sequence Information
- Coding Sequence
- ATGGTCCGAAGAAAAATATCAAAACCACGCGAAATTATATCTGGTAAATATTTGGATGAAGAGTATCATACACCATCATCTTCAACAAATATATGCGGTGACCTTGATTTTGAAAAACAGGACAATATGGCGATACATGCGTTAAATGAACAACATAATTATGAACAACGTGTTGAAAATACTTACAACAATCAACATTATTGTTTAAGATGGAATAATTATCAAACAAATATGACATCTGTATTTCATCAACTGTTACAAAATGAGGCATTTGTTGATGTTACATTAGCATGTAATGACCTCTCATTAAAAGCACATAAGGTGGTTTTATCCGCATGTTCAACATATTTTCAAAAATTATTGTTAGAAAATCCTTGTAAACATCCCACAATTATAATGCCACAAGATGTATGCTACACAGATTTAAAATTCATCATAGAATTTGTATATAGAGGTGAAATTGATGTTTCACAAGAAGAATTACAGTCATTACTGAAAACGGCAGATCAATTAAAAATAAAAGGTTTATGTGAAATACCAGGAACAACAGATCATACAATTATTCCCACTTCCATAAACAATAACACAATAATCAACGATAAATACAATCAAGAAACATCATTACATCATTCACAACAACAGAACCATCGAATTGAATTGTCACCAGTTCCAATTGTATCCCGACGTGCATATTCAAAATTACGACGGATAACAACATCAACAAATAAGCGTTTACATACAAAATATCGTTTACTTTCACCAAAACGTAGTTTAAAAGATATCACCCATATTACAGGAGATTCACCAGAGAATTGTAAAATAGATCTAAACACTACACAAGGTGAAACAAACAGTGAACAACGTTTTTGTGATCAATCTGTAGATGAGGATGATAAAGAACATAAAATGCCCGCAGTGCTGATGGTCAATGACGAAAAAGTGACGAACGGGGAAGGTTTTGGAGGTACTTTAGACGAGGAAAGTCTTCCAATAAAACGTGAAACACTGGATCGTATAACAGACAATAACGGCGATCATTGTGATCGCGATAATTTGTGGTCACCGGCCGCTAGTAGCGATAGTGGTGGTAGTAATCAACCATTAAATATGACCGGTCATGGACTATTAACTTCACAAACATTATTTCCTGGTCACGTTGAATTACCTCCAGAACCTCCAGCACCCTCTGCGACACCAGTGCCATGTCCACCTCAGGAATTAATACATAATTCTCATACAGTTAATTTAACACATTGTTCGCCAACAACTCACCATGATTTAAGTGACACAAATATGTCGGTACAAGATGTCGGTGGTATGCATTGCGGAAGTATGTCCGGTTACGGTGAAGATGTTAAAGTGAAATTCGAAACATTACGATCGGTAGATTCAGCTGGTGATATCGATGCATGTAGTCGTATGTCACAAGAAAGCAGTGATTCGATGCGACAGCACCAGTCGAGTATGATGATTACACCTCAGTTACTAGGTCTGTTGCCGGGATCATCAGATTTGAGCATGTCTGAATCATCTTCACGAATTAAAACTAATGGTCACAATAACTCCCACGCGTTTAATATAATGCCTTTACAAAATCATTCACAATCGCATGGTATAAATAATGGTATGAATACAAGTTCGGGTTCTACTTCTTCCTCGGTGGTAGGGTCTGGCGGTAATCATCCTGGTGGTGTTGGTGGTGGGCCCAAAACATGGAGTCAAGAGGATATGGAACTTGCGTTAGATGCCTTACGAAATCATAACATGAGTTTAACAAAGGCATCAGCGACTTACGGCATTCCATCAACTACGTTATGGCAACGTGCTCATCGTTTAGGTATTGATACACCAAAAAAAGAAGGTCCTACAAAATCATGGACAGAAGATAGTTTAAATTCAGCGTTAGAAGCGTTAAGAACTGGTACAATATCAGCAAATAAAGCCAGTAAAGCTTATGGTATTCCAAGCAGTACATTGTATAAAATTGCAAGACGTGAAGGTATACGTTTAGCTGCTCCATTTAATGCAGCACCTACAACATGGTCACCGGATGATTTAGAACGTGCGTTAGAATCAATACGTTCTGGACAAACTTCAGTACAAAGGGCTTCCACAGAATTTGGTATACCGACCGGTACATTGTATGGACGTTGTAAAAGAGAAGGTATTGAATTGTCACGATCAAATCCGACTCCTTGGTCAGAAGATGCGATGGGAGAGGCGCTAGAAGCAGTCAGAGTGGGTCAAATGTCGATAAATCAAGCTGCTATACATTACAACCTACCTTATTCTTCCCTATATGGTCGATTCAAACGTGGAAAATATGATAATGATAGTCCACAGATGAATAGTGGTATGCCACAATCATTGTTAGATTCAAATAGCCATGAGAATACAAATTCAATGCATGCAACTGACCATCAACATCAACTAATGCAACAATATGCTACTGTTTCTCAACAAATGAACGCAAATCAACATTCAATGGTGCCAGAAAATCAACAGCAACAACAACAAAACCAACAGCAACACACGCAACACCCACAACACCCACATTCCCCGCAACCACAGCATCAGCCGCCCCCACAACATCAGCATCCTCAACAAAATCAGCCACAATTTGTTCCACATGGTAGCATAAGCTGA
- Protein Sequence
- MVRRKISKPREIISGKYLDEEYHTPSSSTNICGDLDFEKQDNMAIHALNEQHNYEQRVENTYNNQHYCLRWNNYQTNMTSVFHQLLQNEAFVDVTLACNDLSLKAHKVVLSACSTYFQKLLLENPCKHPTIIMPQDVCYTDLKFIIEFVYRGEIDVSQEELQSLLKTADQLKIKGLCEIPGTTDHTIIPTSINNNTIINDKYNQETSLHHSQQQNHRIELSPVPIVSRRAYSKLRRITTSTNKRLHTKYRLLSPKRSLKDITHITGDSPENCKIDLNTTQGETNSEQRFCDQSVDEDDKEHKMPAVLMVNDEKVTNGEGFGGTLDEESLPIKRETLDRITDNNGDHCDRDNLWSPAASSDSGGSNQPLNMTGHGLLTSQTLFPGHVELPPEPPAPSATPVPCPPQELIHNSHTVNLTHCSPTTHHDLSDTNMSVQDVGGMHCGSMSGYGEDVKVKFETLRSVDSAGDIDACSRMSQESSDSMRQHQSSMMITPQLLGLLPGSSDLSMSESSSRIKTNGHNNSHAFNIMPLQNHSQSHGINNGMNTSSGSTSSSVVGSGGNHPGGVGGGPKTWSQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEDSLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPDDLERALESIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDNDSPQMNSGMPQSLLDSNSHENTNSMHATDHQHQLMQQYATVSQQMNANQHSMVPENQQQQQQNQQQHTQHPQHPHSPQPQHQPPPQHQHPQQNQPQFVPHGSIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332549; iTF_01060830; iTF_01060556;
- 90% Identity
- iTF_00332549; iTF_01060830; iTF_01060556;
- 80% Identity
- iTF_00332549;