Nlug008914.1
Basic Information
- Insect
- Nilaparvata lugens
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_014356525.1
- Location
- chr14:4164694-4204522[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1 2.5e+04 -6.6 9.0 30 88 423 478 418 518 0.65 2 3 2.6e-91 6.5e-87 292.1 33.7 1 300 681 999 681 999 0.85 3 3 0.0092 2.3e+02 1.3 3.6 130 167 1028 1065 1010 1073 0.80
Sequence Information
- Coding Sequence
- ATGGAAAACACTAACAGTAGCGCTGTAACAGCTTACAACAACAGTTTTAATGGACAATTAATTCTTTCCTCCAATAATCAAATCAACATAATCAATAAGAACAGTGATCTGAAAAATGGTTATCAAGATGACCCCAAAAATGTAAATCATGATGTGAATTTGTGCTGTATAGAGGTTAAAAATAGTGACAATGGTGCAGAAACTTGTGATGCCAAAGTGTTGAATGATACAGATTTTAATGCGGCAAAAGTGTTCAATGGTGTAGAACCAAAGTATGTGTCTATAATTGATGTAAATTCGTCTCCGGATTTTGTGACAGTGAATGGGGGTGTGGATGGACCTCCAAATAGTGTGTATACAAATGGGGACTGTGACAAAGATGGTTTGGGAAAAGTGCATGTTGCCAGTTTGAATGGTTTTGTTGCAGATGGGAAAACACTAGATTCTGAAGTAAATTTAGGCACAGAATATTGTTCGCAGAATGGTGATGTATTGAGTTTGAAAGAAAGTCAAACCAACTTTGGTGTGCAACAGGTTTTGTGTGCAGAAAATGGTGTACAGGCATTTAATGTCAATGGAGGTCCAGTTTTGGCAGAATCTGAAGATGTTCTGGTGTCGAAGTGTTTGATAGGCGCAGAATCTTGTTTTGGTGGTTCCTTGGACATCAATGGTTCATCAAGATTGATCTCTGAAGAGGGTCTAGGTTCCCAGCAACTGTTGAAGGTTGAAACTGTTGATAGGAATCATCAGAATTTGTGTTCAACCAATTCAGGAACATCTGATGAAGATGTTGATGGACATCATCTGATAATTTCGGATAAGAATCACCAGAAATTGTGTCAATCCAATTCAGGAACATCCGATGAAGACATCAGTGGACATCATCTGTCAATGTCAGCCATTCAGCAGAAATTTACCAACCATATGAACAGCTTAGGTTCGTCTTCTGGTTATGAAACAGATCCCAATGTTTCAATTGTGGATGTGAGTGTAGGTCCTGATGATATTATGAAGTCTTCTGATGCTGGGAAGGTTGGTAGCAGTGGAGACAGGGTTGGGGGTGAAGAGATAAAGAATGATGGTAACCTTGGAGGGTCAATGGTGACAGATGCAGAAGAGGATGAGGGTGATGAGTCCACATCGCAAAGCAATGGGAGATCTTCAAGAAGTGTTGATCCCGATGATTTAACCAAGAGTAATGGGAATTCTGCTAAGGGTGACAATACAGTGTGTAAAAATAGCACAGTTTTTTCAAGTAAGGATGATGTTGAAGATGATGACGATGATGAAGAAGATTCCAATAGAAATGAAGACTCTTTCATGAATGATAATGATATTGATGAGGCCATGGCAAAGAGTGATGAAGAATCTTCCAGAGAAACTAGTCTTGATGGTGTTGCTGTCAAGAGCAATGGACATTCTTTGAAAGATGATGTGGAGGGAGAATCTTCAAGTAAAAAGAGTTCTTCAGGAACATCCAGAGGTGCCAGTGCAGAAAGTGGACAAAGTATGGATGTTGATGATAATGAAGAGGCATCAAGGAAAAATGCTTCAAGTAGTTATGGAAATGATTCTGTCGATTGTTCTGCAGAGGGAATTTCTGACACAAATGACCCAAAAATGTCTGGAAGCCCTGGGGCAGCACTTTCTGCCAAAAATGGGACAAAACCGTCTGCAAGTCGTGGAGCAGGAATCCTTGCCAAAAATGACTCAGAATCCTCTGCAACCTCTGGAGCAGATATTTCTGCCAAAAATGGCGCAAAACCTTCTGCACCATCTGGTGTAGAAGATTCTGCCCCAAATGGCAAACATGCAGAACGTCATGTTGGTGAGGATGATGAAGATGATGATGGTTCCTGTTTGGATGGTTATTCTACCAACGATGAAGAAGATGATGAAATTGATGCCAGAACAAAGGATCTAAAACCTAAGAAGCCGCAGTTGCAGAGGACACGCAGTAATGCTGGATCAACTGACTACTGGAATGAGGAAGGGGAAGATGGATGTATTGTGGAGTTCTTGGACAAAAGCACTGATTGTGCTGAAGCTCGTTTGGCGGCAAAACGACAGGCAAGAGCGGAAGCGCGCGAAATTCGAATGCGAGAGTTGGAACATGCCGTCCAACGATCGTCGCGTGTGGCAGCCGCTATTGCGACACCTCGCTCTCTCTCTTCCAGGGAGAACCATCGCAGTGAGAGGGAGAGAGAGAACAACAGTTATCATTCGTCGCGGCGGAGCTCTGAAGATTCTCTGGAGGAAGCCACTAGTCTCAGGGATATGAGGCACGAACTGAAGGAGGTGGAGGATAAGTTTCGGAAAGCTATGATAGCCAATGCGCAATTGGACAATGAGAAGGCGGCTGCAGCCTATCAGGTGGAACTGCTCAAAGATCGGCTGGAGGAGATGGATGAAAATCACTCTCAACTCAACAGAGAACATCGTGACAAGTGTAGACAATTCGAAGCTTTAAAAAGAGCGGCTGCCAAATTGCAGGAAGATTTAGAATTCACCAGGGCACAACTAGAAGATCGAGATCGACTTATCGAGGTTAGTATCGATCGACTTATCGAGGAACAAGGTCTCGTGATAGTGGGAGGGGAGTACTCGTCGAGTGGAGAGGACGATGATCATAGCGGAGGTGATAGTGGCAGGCTGAGCAAAACACCGAAAACACCGAAACGGGCGCTAGTGTCCTCACAGGTCGCTGAGGTCCTTGAGAAGGTCGGCACAGGGTCTTTAGACGTACGACTAAAAAAATTCGTCGAGCAACGCAATGAACTTCTAGACGAACTGAACCGCGTCAAACTGGAGTTAGAGGAAGAGCGCACACGTAACCGAGGCGGCGCCGCTAACCGGCGGTTAGCTAACGGCCCGTTAAGCGTTGACGGCGGCTTGAGCTCGGGTTTGGACGACATTGAGGAGGTGCAGCGAGAGGCTAACAAGCTGATCGGCGATTACAAGTTCCGGTTACAAAAGGCTGACCAGGATAACAGCACACTGCAAGCTACGGTTGCCAGATTAGAAAGCCAGGTAGTGCGATATAAGACGGCTGCAGAAATAGCTGAAAAAGTGGAAGATGATTTAAAAGCTGAGAAACGGAAACTACAGAGAGAGTATCGAGAGTCGCAGGCGAGAGTCGAAGAACTGGAAACTGCTCACTCGCACCTACAGAAACGATTAGATAAATTGAAAAATGCAAAATCAGCACTTTTAAAAGAACTGTAG
- Protein Sequence
- MENTNSSAVTAYNNSFNGQLILSSNNQINIINKNSDLKNGYQDDPKNVNHDVNLCCIEVKNSDNGAETCDAKVLNDTDFNAAKVFNGVEPKYVSIIDVNSSPDFVTVNGGVDGPPNSVYTNGDCDKDGLGKVHVASLNGFVADGKTLDSEVNLGTEYCSQNGDVLSLKESQTNFGVQQVLCAENGVQAFNVNGGPVLAESEDVLVSKCLIGAESCFGGSLDINGSSRLISEEGLGSQQLLKVETVDRNHQNLCSTNSGTSDEDVDGHHLIISDKNHQKLCQSNSGTSDEDISGHHLSMSAIQQKFTNHMNSLGSSSGYETDPNVSIVDVSVGPDDIMKSSDAGKVGSSGDRVGGEEIKNDGNLGGSMVTDAEEDEGDESTSQSNGRSSRSVDPDDLTKSNGNSAKGDNTVCKNSTVFSSKDDVEDDDDDEEDSNRNEDSFMNDNDIDEAMAKSDEESSRETSLDGVAVKSNGHSLKDDVEGESSSKKSSSGTSRGASAESGQSMDVDDNEEASRKNASSSYGNDSVDCSAEGISDTNDPKMSGSPGAALSAKNGTKPSASRGAGILAKNDSESSATSGADISAKNGAKPSAPSGVEDSAPNGKHAERHVGEDDEDDDGSCLDGYSTNDEEDDEIDARTKDLKPKKPQLQRTRSNAGSTDYWNEEGEDGCIVEFLDKSTDCAEARLAAKRQARAEAREIRMRELEHAVQRSSRVAAAIATPRSLSSRENHRSERERENNSYHSSRRSSEDSLEEATSLRDMRHELKEVEDKFRKAMIANAQLDNEKAAAAYQVELLKDRLEEMDENHSQLNREHRDKCRQFEALKRAAAKLQEDLEFTRAQLEDRDRLIEVSIDRLIEEQGLVIVGGEYSSSGEDDDHSGGDSGRLSKTPKTPKRALVSSQVAEVLEKVGTGSLDVRLKKFVEQRNELLDELNRVKLELEEERTRNRGGAANRRLANGPLSVDGGLSSGLDDIEEVQREANKLIGDYKFRLQKADQDNSTLQATVARLESQVVRYKTAAEIAEKVEDDLKAEKRKLQREYRESQARVEELETAHSHLQKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -