Nlug014046.1
Basic Information
- Insect
- Nilaparvata lugens
- Gene Symbol
- TFIP11_1
- Assembly
- GCA_014356525.1
- Location
- chr6:12682716-12723212[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-90 1.7e-86 290.7 13.1 3 275 216 485 214 485 0.98
Sequence Information
- Coding Sequence
- ATGTCAGACGAGGAACTGGAAAGTTTTGAAGTAACTGATTTCGACTTGGAAAATGAATTCAATATCAACAGAAAACAGTTCAGACAGACAAAGAATCAAGCTATTTACGGAGCGTACGGTCCGGAAAAAGCGAAGAAGAAGGAGCAGCAGGAAAAGGAACTACAGGAGGCGAAAGGGGGTAAAAAGGGCTCTGTAGGGGTCTCAGGGGATGCCTCCCTGTCGCAGTGGCGGAAAGATGGCGGAAATGCGGCCAAAAAGAAGAACGTGCATGAACTGGCAAAAGTGAAGGTGATAGATATGACAGGACCCGAGCAGCGGGTTCTTTCAGGTTACCACGCCATATCGGGAGTGAAGAAGCCAAGCGAGCAGTGGGAGTTGAGACGTGAGAAGAAGTTCACCAACTTTGAGCTACCTGAACTCCAGCATAATCTGGATTTGCTCGTCGAAATGTGTGAAGAGGCGATTGTACAGAACAACAAGCAGACAACCTACACAGAGGACAGGTCAGTGACGTTGGAGAACGAGTTGAAGAATCTGGAGATAGTGGAATCGCAGGAGGCGCAGTCCATTGAGACACTAGAGAAGGTGCTGGCAATTGTCGAGGATCTCATGCAGAAAAGCGACAATCATACGCTCACACTCGACTTAGCTGCTGAAGCTTTCCACGATTTACAGACCAACTACATGAGTGAATACTGCGCCTACGAGGTACAATCTCTGGCGTTGGGCCTAGTGGTGCCCCTAATCAAAGACCAGCTGAGCACGTGGAGTGTCTTGCAACAACCGTGCGCCCCCCTGGGGGTGTTTGGCAGGTGGCAACAGCTGTTGAGTCCCCCCACAGCTGGCAACATGCACTTCACAGCTGATCACAATCACAGCTACCACAAGCTGGTCTGGGATGCGTGGATGCCGTCTATCAGGATAGCTGTTAGTACGTGGAACTGCCGCGACTACTCCAGAATGCTGGAACTGGTGGAAGCATGGCGTGGTGTGATACCCGGCTGGACACTGGACAATATAATCAGTGACCTCATTGTGCCCAAACTCCAGCGGGAGGTGGATGACTGGAACCCTGTTCAGGACACCATCCCCATACATACGTGGATTCATCCTTGGTTGCCTCTTATAGGCACAAAAGCCCTGGAAACGTCAGTATTCCCGACGATCCGCCACAAGCTAAGCGTGGCTCTGGTGAACTGGCATCCGAGTGACCCATCAGCTCGCCTCATGCTGACTCCCTGGCAAGGAGTGTTCAACCGGGGCCAGATGGATGCATTCCTTGTCAACAACATTGTGCCGAAACTGCATCAGAGCTTGCAACAGTTGGTCATTAATCCACATCAACAGCATTTGGATAATTGGAAATGGGTGATGGACTGGTCTGAAATGATTCCAGTGTACTCCATGGCTTCTATTCTGGATAAGAGCTTCTTCCCCAAATGGATGCAAGTGCTCAGTCTGTGGCTGAATGTGGCTCAACCCAACTATGACCAGGTAATCGTTATTCCATAG
- Protein Sequence
- MSDEELESFEVTDFDLENEFNINRKQFRQTKNQAIYGAYGPEKAKKKEQQEKELQEAKGGKKGSVGVSGDASLSQWRKDGGNAAKKKNVHELAKVKVIDMTGPEQRVLSGYHAISGVKKPSEQWELRREKKFTNFELPELQHNLDLLVEMCEEAIVQNNKQTTYTEDRSVTLENELKNLEIVESQEAQSIETLEKVLAIVEDLMQKSDNHTLTLDLAAEAFHDLQTNYMSEYCAYEVQSLALGLVVPLIKDQLSTWSVLQQPCAPLGVFGRWQQLLSPPTAGNMHFTADHNHSYHKLVWDAWMPSIRIAVSTWNCRDYSRMLELVEAWRGVIPGWTLDNIISDLIVPKLQREVDDWNPVQDTIPIHTWIHPWLPLIGTKALETSVFPTIRHKLSVALVNWHPSDPSARLMLTPWQGVFNRGQMDAFLVNNIVPKLHQSLQQLVINPHQQHLDNWKWVMDWSEMIPVYSMASILDKSFFPKWMQVLSLWLNVAQPNYDQVIVIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -