Nlug006819.1
Basic Information
- Insect
- Nilaparvata lugens
- Gene Symbol
- retn
- Assembly
- GCA_014356525.1
- Location
- chr2:61796962-61816885[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.3e-20 1.9e-16 60.6 0.0 17 89 4 74 1 74 0.94 2 2 1.1 2.3e+03 -0.5 0.0 15 38 188 214 163 215 0.73
Sequence Information
- Coding Sequence
- ATGAACATAAGTACACCAATTAACCGATTGCCGATAATGGCCAAGTCAGTGCTGGACCTGTACGAGCTGTACAACCTGGTGATTCAGCGCGGCGGACTTGTTGACGTCATCAACAAGAAGCTGTGGCAGGAGATCATCAAAGGCCTGCATTTGCCCTCATCCATAACTTCGGCCGCGTTCACTCTCAGAACACAGTACATGAAATACTTGTACCCGTACGAGTGTGAGAAGCGACGTCTGAGCACGCCAGTGGAACTGCAGGCGGCGATAGACGGCAACCGACGCGAGGGACGCAGGGGCAGCTACGGGTATGGCGACGTGATGGCGGGTCACCACCAGCAACGCAGCCCCACGCAGATGAGTCCGCTCAGCCTCGTGACGGGCATCTCGCATCTCGCCCCGCATCACGCCTCTTCTCGGCCGCATCTCAACGGCAACTCCCAGCATCATCACGGTCCTCTTCCGGGAGTGGTGCCGCCGGAGTTTGAGGCCAGAATGGTCGAATATGTCAAATTCCTGAACAAGGAGCTCAGGAACTCAGCGTCAACACCTCCAAACCATAGGCAAAATTCGCCGCCAGGTTCACCGCACGAGCCGTCGTTCAGCGAGATGTCCCGCCTCTCGCTGTGGAACCTGTACCACGGGGGCGGCAGCACCGCCTCTTCACCGCCTCCGGCCCCAGCTGCCGCCTCTCACTCCTCCAGCCCTGCCACCCCCGAGCCACAGAAGGAACCCATCAATCTGGAGAAACGCGAGTCGAGTTCGGCGTCGCCACCCGCCAAGCGATTCGTCTGCGACAGTCCTGAGCCAAAGTATGAGCCAAAGCATACCCCCTCCAAGCTGCCGCACATCAAGATCTCCAACAAAGGTGACGGTCGAACATCAGAGAGCTCCCTAGTGGTCACAATAGACATAAATGGCATCGAATACAGAGGTGTGGTGTTTGCGCAGACTCCTCATACGGCTAACAACAACAATAACAGCACCTACATGGAGCATGGAGCCGGAATTCATGTTGCCTTTGATCTGATTTCGATTACAATTAAGATACCCAAAAAACAATAA
- Protein Sequence
- MNISTPINRLPIMAKSVLDLYELYNLVIQRGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPVELQAAIDGNRREGRRGSYGYGDVMAGHHQQRSPTQMSPLSLVTGISHLAPHHASSRPHLNGNSQHHHGPLPGVVPPEFEARMVEYVKFLNKELRNSASTPPNHRQNSPPGSPHEPSFSEMSRLSLWNLYHGGGSTASSPPPAPAAASHSSSPATPEPQKEPINLEKRESSSASPPAKRFVCDSPEPKYEPKHTPSKLPHIKISNKGDGRTSESSLVVTIDINGIEYRGVVFAQTPHTANNNNNSTYMEHGAGIHVAFDLISITIKIPKKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00857384;
- 90% Identity
- -
- 80% Identity
- -