Lstr026672.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- retn
- Assembly
- GCA_014465815.1
- Location
- CM025322.1:7975726-7986805[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-20 1.8e-16 61.6 0.0 16 89 5 76 1 76 0.93 2 2 0.81 4.1e+03 -0.4 0.0 15 38 199 225 174 226 0.72
Sequence Information
- Coding Sequence
- ATGTATTTGAATAGATGTACACCAATCAACAGACTGCCGATAATGGCGAAATCGGTGCTAGACCTTTACGAGCTGTACAATCTGGTGATCCAGCGCGGAGGCCTTGTCGACGTCATCAACAAAAAACTCTGGCAGGAGATCATCAAAGGCCTGCATCTGCCATCGTCTATCACATCCGCCGCCTTCACCCTGCGAACACAATACATGAAGTACCTGTACCCGTACGAGTGCGAGAAGCGACGCCTAAGCACGCCGGTGGAGCTGCAGGCGGCAATCGACGGCAACCGACGCGAAGGACGCCGCGGCAGCTACGGCTACGGTGACGTCATGAGCAGCCACCAGCAGCAGCAGCGCAGCCCCACGCAGATGAGTCCGCTCAGCCTGGTCACTGGCATGTCGCATCTGGCGCCGCACCGCCAGCCGCATCTCAACGGCAACTCGCAGCACCATCACGGTCATCATCATCTGGTGCCGTCTGCCATGCAAGGTCCTCTTCCAGGAGTAGTGCCACCAGAGTTTGAGGCGAGAATGGTCGAATACGTTAAATTTCTAAATAAGGAACTCAGGAATTCAACATCAACACCTCCTAATCATAGGCAAAATTCACCGCCAGGATCGCCTCACGAACCATCGTTCAGCGAAATGTCGCGCCTATCGCTGTGGAACCTGTATCACGGCGGAGGCGGCAGCGCGTCTTCACCGCCCCTGGCTCTGGCTCCCGCCTCCCACTCGAGCCCTGCCACCCCCGAGCCACAGAAGGAGCCCATCAATCTGGAGAAACGTGAGTCTAGCTCGGCTTCACCACCCGCCAAAAGACTTGTTTCCGACAGTCCAGAGCCCACAAAGCTGCCACACATCAAGATCTCCAACAAAGGTGATGGTAGAGCATCAGAAAGTTCTCTAGTGGTCACAATAGACATAAACGGCATCGAATATCGTGGCGTCGTATTTGCGCAGACTCCACACACAGCTAACAACAATAACAACAACAACAGCAGCAACAACAACACTAGCACTAGGCATTCGTCGTGA
- Protein Sequence
- MYLNRCTPINRLPIMAKSVLDLYELYNLVIQRGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPVELQAAIDGNRREGRRGSYGYGDVMSSHQQQQRSPTQMSPLSLVTGMSHLAPHRQPHLNGNSQHHHGHHHLVPSAMQGPLPGVVPPEFEARMVEYVKFLNKELRNSTSTPPNHRQNSPPGSPHEPSFSEMSRLSLWNLYHGGGGSASSPPLALAPASHSSPATPEPQKEPINLEKRESSSASPPAKRLVSDSPEPTKLPHIKISNKGDGRASESSLVVTIDINGIEYRGVVFAQTPHTANNNNNNNSSNNNTSTRHSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01059541;
- 90% Identity
- -
- 80% Identity
- -