Basic Information

Insect: Nicrophorus vespilloides
Gene Symbol: stc
Assembly: GCA_001412225.1
Location: NW:305226-309185[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.8 1e+04 -4.0 3.0 6 10 266 270 262 270 0.61

2 13 0.068 3.9e+02 0.6 0.4 4 10 296 302 295 304 0.95

3 13 8.3e-06 0.048 13.1 15.5 3 18 310 325 302 326 0.85

4 13 3.4e-05 0.19 11.1 11.5 1 19 362 380 362 380 0.96

5 13 2.4e-10 1.4e-06 27.6 11.8 1 18 420 437 420 438 0.97

6 13 4.2e-05 0.24 10.8 11.5 4 19 485 500 478 500 0.85

7 13 0.8 4.7e+03 -2.8 1.9 5 10 529 534 529 535 0.93

8 13 2 1.2e+04 -6.0 13.5 1 11 540 550 540 562 0.88

9 13 2.4e-10 1.4e-06 27.6 13.8 1 19 567 585 567 585 0.98

10 13 1.4 8.2e+03 -3.6 1.6 6 10 614 618 613 619 0.65

11 13 0.005 29 4.2 13.3 1 19 624 641 624 641 0.80

12 13 0.0017 9.6 5.7 16.0 1 18 677 695 667 696 0.91

13 13 0.0066 38 3.8 16.9 3 19 707 725 706 725 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.8	1e+04	-4.0	3.0	6	10	266	270	262	270	0.61
2	13	0.068	3.9e+02	0.6	0.4	4	10	296	302	295	304	0.95
3	13	8.3e-06	0.048	13.1	15.5	3	18	310	325	302	326	0.85
4	13	3.4e-05	0.19	11.1	11.5	1	19	362	380	362	380	0.96
5	13	2.4e-10	1.4e-06	27.6	11.8	1	18	420	437	420	438	0.97
6	13	4.2e-05	0.24	10.8	11.5	4	19	485	500	478	500	0.85
7	13	0.8	4.7e+03	-2.8	1.9	5	10	529	534	529	535	0.93
8	13	2	1.2e+04	-6.0	13.5	1	11	540	550	540	562	0.88
9	13	2.4e-10	1.4e-06	27.6	13.8	1	19	567	585	567	585	0.98
10	13	1.4	8.2e+03	-3.6	1.6	6	10	614	618	613	619	0.65
11	13	0.005	29	4.2	13.3	1	19	624	641	624	641	0.80
12	13	0.0017	9.6	5.7	16.0	1	18	677	695	667	696	0.91
13	13	0.0066	38	3.8	16.9	3	19	707	725	706	725	0.92

Sequence Information

Coding Sequence: ATGTCCCATTGGGACCAGGACAATGGTGGCCCCAGTCGTGGAGGAGGCAATGTTAGTCGAAGTCAGCATCAAGTTTATTTTGCCAACAATCGAGGTCACAGTAACCGCAACCATTATGACTATAGTGGTGGAGAAAGATCAGGAAACAATAACTCTCAGGGAAATAATCATGATGAATCCAGACTGCCAATAGATATAAGTCACACCAATTTACATGCAACAGCTGCAGAATTCAAGCCAGGAGCTTCCTACTATCCAAGGAACAATGGCAGCAATGGAGCCATCAAGAAAACTTATAATGGGAAGGTTGAGAATGGTAAATTTAAAAGGTATTACAGTAACAATTATGGCAAGAAGAAACAGCATAATGAACATGTGGAAACTGATTCTGAGAGggtggaaataaataatgcgaAAGGAAATCCTCAGAAGTATAATAATGGAGATAATAGGGGATACAGAGGGAACGGATACAGGGGTAATAAGAATGGATATTATAAGGAGGACTATAGTAAGAAGAGCAATCAAAGGAATGATAACTGGAGGCAGAAGGAAAAAGATAGAGAGAGGAAGCCACCTAAGCAAAACCAGAAGAAggTTGACGCTGGATCGCAGCGCGAAAGATTGGAGCACATGGTAACACATAGAACTTTGGAATGTTTGGTCTGCTGTGAACGGTTAAGACATACGGACAGAATTTGGTCCTGCAAACAGTGTTTCCATATCCTACATCTGAGTTGCGTCATCAAATGGGCGAAGGCATCCAGATTGGAAGAAGGTTGGAGATGTCCGGCCTGTCAAAATGTTTGCATCGAGGTGCCGCATGAATACAGGTGCTATTGTGGGAAATTTGTGGAACCCAAACTGGAGCCTGGCGGTCTTCCGCACAGCTGTGGGGAGGTTTGCGGTCGCAAAGGGCGAGGCTGCGAACATCGATGCACCCTGCTGTGCCATCCTGGTCCATGTCCAGATTGCAACATTATGATTGGAAAACTATGCGGATGTGGCGCAACCAAACCTACTGTGAAATGCAGCTCGGACCTGGAGATCACCTGCCAAGGCATCTGTGACAAAACGTTGAATTGCAGTGCGCACAAATGCACCAAGCCATGTCATATCAGCGATTGCGAGCCTTGCAAGGATTGGGTGCGACAGGAATGCTATTGCGGGAAGGTTGGAAGGAAGGTCAAATGCACTGAAAAGGTTCAGGGCGTTCACATGTACAAGTGTGGAGATGTTTGCGGTAAAAAATTAGGATGCGGCAATCACAGCTGCGAGAGGTTGTGCCACGAGGGCGATTGCGAGTCTTGCGAATTAGATCCGAGAATCGTGAAGAGTTGTCCCTGCGGAGCGACAATGCTGAATGAGGAACGAAAATCGTGCCTGGATCCTATCCCTTGTTGCGATAAAATCTGTGGAAGACCTAGGAAATGCGGACAACCCAGCCGTCCGCATCTGTGTCAAGACAAATGCCACGAGGGTGATTGCGTCACTTGCACGCTGAGTACTTTGGTGCGATGTCGCTGCGGCCATATGGACAGAGAACTACCTTGCAAGGATTTGACTACCAAAGCGGACGACGCCAGGTGCCAGAAGAAGTGTACCAAACAGAGGTTGTGCTGCAAGCACAAGTGCAACCAGTTTTGCTGCATCGAGATCGAACATATCTGTCCTCTGCCGTGCAACAGGATTCTTTCCTGCGGACAACATAGATGCGAGGAAAGTTGTCATCGCGGTAGATGCCCTCCCTGCTGGAGAACAAGTTTCGAAGAGCATTACTGCGAGTGCGGATTTACCGTGCTTTATCCTCCTGTGGCTTGCGGCACTCGTCCTCCTCCATGCAGCCAACCTTGCTCCAGGTCCAAGGATTGTGGGCACCCCGCCACGCATAATTGCCACACCGGGGCGTGTCCTCCCTGCACCGTCTTCACATCCAAGTATTGTCACGGTAAGCACGAGATGCGACAGACAATACCGTGCTACCAGAAGGATTTCAGTTGTGGCATGCCTTGCAACAAGGAATTACCGTGCCGTCGTCACAAGTGTATCCAGATATGCCACAGCGATCAGTGCCCTACGCCATGCGgtcaaaaatgtaaaaaatcgCGTCCCAATTGTGAGCATCACTGCAATCAGCCGTGTCATGACTCACCGTGTCCTTCAGTTCCTTGCAAGCAGAACGTAACGGTGACGTGCCAATGCGGATTGCGTACAGCCACGAGAAGCTGCTTGGAAGTGGCAAGCGAGTACCAGAAAATAGCCACCTCGCAGATGGCCTCGAAAATGGCAGAAATTCAACGGGGACAATCGGTGGACATCTCGGATATCGTGAACAAGCAGAAGAAGGGCGCGCATAAGCTATTGGACTGCAACGACGAATGCAGATTAGTCGAACGAAATAGACGTATGGCAATCGGCCTGCAGATCCGCAATCCCGATTTGAGCTCGAAGCTGACGCCGCGGTACACAGATTTTATGAAGGGTTGGGCGAAGAAGGATTCTCGATTTTGTCAGCATATTCACGATAAGTTGACGGAACTGGTTCAACTGGCAAAGCAGAGTAAACAGAAGAATAGGTCGCACTCGTTTGAGTGCATGAATAGGGAAAAGAGGCAGTTCGTGCACGAGTACTGCGAACACTTCGGCGTCGATAGTGCCGCGTACGATAAGGAACCCAACAGGAACGTAGTGGCTACTGCTTATAAGGAGAAATCTTGGTTGCCGAGTTGCAGTCTACTAGAGCTACTGCAAAGGGAGAGTGGTCAGCGGAAGGTTCCTGGGCCGGTTTTGAATAAAGGCATCACCAACAACCCATCCGAGACTGTGTCGTTGAGATTGCAACTAGCCCGTCCTTCCGTCGCTAGTAGCAACAACACGCCATCCTCGCCCGCCGGCGTCTTCGTAGACTACTTCGATAATCCCCCAGCGTAA
Protein Sequence: MSHWDQDNGGPSRGGGNVSRSQHQVYFANNRGHSNRNHYDYSGGERSGNNNSQGNNHDESRLPIDISHTNLHATAAEFKPGASYYPRNNGSNGAIKKTYNGKVENGKFKRYYSNNYGKKKQHNEHVETDSERVEINNAKGNPQKYNNGDNRGYRGNGYRGNKNGYYKEDYSKKSNQRNDNWRQKEKDRERKPPKQNQKKVDAGSQRERLEHMVTHRTLECLVCCERLRHTDRIWSCKQCFHILHLSCVIKWAKASRLEEGWRCPACQNVCIEVPHEYRCYCGKFVEPKLEPGGLPHSCGEVCGRKGRGCEHRCTLLCHPGPCPDCNIMIGKLCGCGATKPTVKCSSDLEITCQGICDKTLNCSAHKCTKPCHISDCEPCKDWVRQECYCGKVGRKVKCTEKVQGVHMYKCGDVCGKKLGCGNHSCERLCHEGDCESCELDPRIVKSCPCGATMLNEERKSCLDPIPCCDKICGRPRKCGQPSRPHLCQDKCHEGDCVTCTLSTLVRCRCGHMDRELPCKDLTTKADDARCQKKCTKQRLCCKHKCNQFCCIEIEHICPLPCNRILSCGQHRCEESCHRGRCPPCWRTSFEEHYCECGFTVLYPPVACGTRPPPCSQPCSRSKDCGHPATHNCHTGACPPCTVFTSKYCHGKHEMRQTIPCYQKDFSCGMPCNKELPCRRHKCIQICHSDQCPTPCGQKCKKSRPNCEHHCNQPCHDSPCPSVPCKQNVTVTCQCGLRTATRSCLEVASEYQKIATSQMASKMAEIQRGQSVDISDIVNKQKKGAHKLLDCNDECRLVERNRRMAIGLQIRNPDLSSKLTPRYTDFMKGWAKKDSRFCQHIHDKLTELVQLAKQSKQKNRSHSFECMNREKRQFVHEYCEHFGVDSAAYDKEPNRNVVATAYKEKSWLPSCSLLELLQRESGQRKVPGPVLNKGITNNPSETVSLRLQLARPSVASSNNTPSSPAGVFVDYFDNPPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01058797;
90% Identity: iTF_01058797;
80% Identity: -