Basic Information

Insect: Nicrophorus vespilloides
Gene Symbol: -
Assembly: GCA_001412225.1
Location: NW:4383-9012[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.1 2.1e+02 2.1 0.1 2 23 7 28 6 28 0.91

2 15 0.19 13 5.9 0.3 1 23 538 561 538 561 0.93

3 15 0.0026 0.18 11.8 0.0 2 23 636 658 635 658 0.93

4 15 3e-05 0.002 17.9 0.3 1 23 666 688 666 688 0.98

5 15 3.9e-06 0.00027 20.6 2.2 2 23 691 712 690 712 0.97

6 15 0.00025 0.017 15.0 1.5 1 23 718 740 718 740 0.98

7 15 3.2e-05 0.0022 17.7 5.3 2 23 747 768 746 769 0.95

8 15 0.29 20 5.3 1.1 5 23 782 800 781 800 0.95

9 15 1.5e-05 0.001 18.8 0.6 3 23 807 828 806 828 0.97

10 15 0.098 6.7 6.8 0.0 2 23 844 864 843 864 0.96

11 15 0.00025 0.017 15.0 1.5 1 20 870 889 870 892 0.92

12 15 0.0002 0.014 15.3 0.4 1 23 900 922 900 922 0.99

13 15 0.00054 0.037 13.9 4.4 1 23 928 950 928 950 0.98

14 15 3.4e-07 2.3e-05 24.0 3.6 1 23 956 978 956 978 0.98

15 15 0.0012 0.082 12.8 7.0 1 23 984 1006 984 1007 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.1	2.1e+02	2.1	0.1	2	23	7	28	6	28	0.91
2	15	0.19	13	5.9	0.3	1	23	538	561	538	561	0.93
3	15	0.0026	0.18	11.8	0.0	2	23	636	658	635	658	0.93
4	15	3e-05	0.002	17.9	0.3	1	23	666	688	666	688	0.98
5	15	3.9e-06	0.00027	20.6	2.2	2	23	691	712	690	712	0.97
6	15	0.00025	0.017	15.0	1.5	1	23	718	740	718	740	0.98
7	15	3.2e-05	0.0022	17.7	5.3	2	23	747	768	746	769	0.95
8	15	0.29	20	5.3	1.1	5	23	782	800	781	800	0.95
9	15	1.5e-05	0.001	18.8	0.6	3	23	807	828	806	828	0.97
10	15	0.098	6.7	6.8	0.0	2	23	844	864	843	864	0.96
11	15	0.00025	0.017	15.0	1.5	1	20	870	889	870	892	0.92
12	15	0.0002	0.014	15.3	0.4	1	23	900	922	900	922	0.99
13	15	0.00054	0.037	13.9	4.4	1	23	928	950	928	950	0.98
14	15	3.4e-07	2.3e-05	24.0	3.6	1	23	956	978	956	978	0.98
15	15	0.0012	0.082	12.8	7.0	1	23	984	1006	984	1007	0.95

Sequence Information

Coding Sequence: ATGGAGGGTGGCACTCAGACCTGTCCAGTCTGCACACTGTACCTGAGACCAGGTATCTCACTGAAGGAGCATCTGACGAGCCACCCAAAGCAGAAAGTGATAGAGGCATTGGTGAAGCTTTCCAATGTAGAGCCAGACAGGCAAATTGCCACAGCATCAAGCAGCATCCAACCTGGTACTAGTCAGCAGCAATGGAACCTGCCAATGAATGCTCAACCCATGCACGCCAATCATTCGTTCATCTATCAGCAGTTCATGAGCTCGACGACGCCGCAGCCGAACGTGCTGGGCGTCAACCATCTGGGGCAGCAGTATGTCACGATACCGACCGTCTTCAATCCTCAGATGATGTGTCCTCCGCCGCCGTACATGTACCAGCAGCAGCAGGTCTTTATGTCGTCGGGTGGACAGCAGATAGCCGCGATGCCAAAACCTTTACCTATTGACAATTTGCAGGAGCAGGTCTCTACGCCCACCGACGATGATGAAGTCGTGGAGCAGCAACTGCATGTGGAAGAGGGGGAGGATGTTGCAGAGGTGATGCATAATGTGGAAGATGAGGAggtggaagaagaagaagaggaagatgATTTGGATAATAGCAAGAAGGAGATGGATGGATTTGAGGTGGAGAGCGACATCAAGGAAACCGTGATTATACAAGGGGATACTATAATTGAGCCGGGTCAGGTTGATTTAAATTTCCTCATGGCTGTGGCTCCTCCTTCTCCACTGCCGCCTCCTCCTTCACTTATTCCACACCCTCTTCCTACTCCCATCGACGTTTCAGTTGAGAACGATGCAATCAATTACGAGAAACCACCCAACAAAGATCTGAACAAATCCTGTCAGACGACGTACGATGAATCGGATATATTCATCGACAAGGAGGACATCGTCGATGATCCTAAAGAGGATGATGACGATGAAGACGAAGACGATGAAAATCGGGAACATTTGGTGGACGAAGAGGACGAGGAAATAGATgaggaagaagatgaagaCGACGATGAGGACGAAgacgatgaagatgatgagGACGAAGACGAAGAGGAACATGTAACCACCGCGAATTACATAACTCTAATTAACCACGAGGAGGCGATGGTCGCAAACGATGAGAATGCGGCGCAGCACAACAACAGCATGATAATGGACATGGATGGAATGAACTTGATGATCAATTCCGATGTGCGGAGGCCGGCAGCTCCAACCCCAGTCGAAgactttgattatattaatcgATACGATCGGCAGCAGACGACGGGTCCAAAGATCAGCATCCACGAGAACGGCGATGAGAGCGTGTCCGTGGATAGCGCCAACATACGTGCCGATGAACACATGCCACCCAGAGGCGAACTGTCCGGGCAGGAGAGCAACGCGAGCGACGTGCCTTGGTCGAGGATGCAATACCACGAGGGCAATTCGGCGACATCCACCAGCTATAATACCGACGTTAACGTGCAGGACGGATGGGATGGTTCTTCGGACATGTCCAACTGCGAAGTGCCGCCACTTCAAAGCAGAGTTCCTCCAGCGTACGAGGAAGATGAGGACGATGACGACGACGTTCCCACCATTTCTGGATGCTCGAATTCGGGCATACAATACAAATGCTCTAGTTGCGAAGCGATGTTCAATACGGTCAAAGACCGAGTTGCTCACCAAGCGTTGAAGCATCCGAAAGATAGGAGAGAGGAGGAGACTAAAGTTGTTAAGAGGAGGACTGTGAAGAAGTTGGTTCTAAAATCGAAGAAGGCCGGCGTAAAAGCCGAAAACACCTTCGACAACGTCTTCACCAATAAGCTTAACGTGGAGGAGAATAAAGCCGATGAAGAGCCTGTGAAGTTGGAATCCGCTACGCACAATACCAGCGTCGCTTCGGTGGTGGTGAACCCAACCGTATGCACCATATGCGATGCCGTCGTGTCTGACAACACCGCTCTGCAGCAGCATCTCTCCGAAGTTCACAACATCACAAATGAGGAGAGGTACAAGTGCAGTATGTGCAAAGAGGTTTTCGCCAACGAGTCCAAGTACACGGCCCACCTGGCCATCCATCCTCTGGAGTGCCGTCTGTGCGGTAAATTCTTTTATCGACGGCAGAACCTACAGTTGCACATGAAGAGGCATCTCGGAATCAGGCCGTACAAGTGCACTGTATGTGACAAGAGTTTCCTAACCAGGCAGAAGTTGGAGGAGCACAAAAACATTCATACCGGTGACTCGCCGATCAAGTGCAATCTGTGCGACGAGACGTTCAGGCGACATTCGAACCTGGTGCAACACAAGAACCGGCATCATTTCAACGTGAAGAAGAAGGTGAAAGACTACATATGTACCTGCGGCGAGATCTTCCACTCGAAGCGGAAGCTCGCGTGGCACAAGGAGGTGCACGATAACAAGCCGAAGGCGTGTCCCTACTGCAGCGCCAAGTTCATCCACGCCTCCAGCCTGACGAGACACGTGCGGCGCGCTCACAACGATCGGTTCGTCCCCAAAGAGGAGCGAAGCAACGAGAACGTCCAGTGTCCCATCTGCAATGGCGTATTCCTACGGGCCTCGCTGGACGTGCACATCAAGAATCACAGCGGCATCAAGCAATTTCGCTGCTTAATCTGTAGCAAAGATTTCACCACCAAGTGGAACCTGAAACTGCACAAGTGGACACACGCGGCTCGCGCCGCCAAACCTTTCAAATGTGAACTATGCAAGGGGGCTTTCATCCGCGAGACGGACTACACGGCCCACATGAACTCGCACAAGTCGATCAGGCCTTACACCTGCAACTACTGCGGCGCCCAGTTTAACCGCAAGTACAACTGTCAGAGGCACGTCAAAGAACACGTGAAGGTTAAGAACTTCAACTGCCAAATCTGCGGTAAGAGCTTTCACAGGTCATACTACCTGAAGGATCACATGCGCATCCACAGCGGCGACCGCCCTTATGCCTGTCACATCTGCGGCAAGTCCTCCAACTCGAAGAGTAACCACAACAAGCACGTGAAGACGCACCACGCCCGTGAACCTGTCAGCACCGAGATCTGA
Protein Sequence: MEGGTQTCPVCTLYLRPGISLKEHLTSHPKQKVIEALVKLSNVEPDRQIATASSSIQPGTSQQQWNLPMNAQPMHANHSFIYQQFMSSTTPQPNVLGVNHLGQQYVTIPTVFNPQMMCPPPPYMYQQQQVFMSSGGQQIAAMPKPLPIDNLQEQVSTPTDDDEVVEQQLHVEEGEDVAEVMHNVEDEEVEEEEEEDDLDNSKKEMDGFEVESDIKETVIIQGDTIIEPGQVDLNFLMAVAPPSPLPPPPSLIPHPLPTPIDVSVENDAINYEKPPNKDLNKSCQTTYDESDIFIDKEDIVDDPKEDDDDEDEDDENREHLVDEEDEEIDEEEDEDDDEDEDDEDDEDEDEEEHVTTANYITLINHEEAMVANDENAAQHNNSMIMDMDGMNLMINSDVRRPAAPTPVEDFDYINRYDRQQTTGPKISIHENGDESVSVDSANIRADEHMPPRGELSGQESNASDVPWSRMQYHEGNSATSTSYNTDVNVQDGWDGSSDMSNCEVPPLQSRVPPAYEEDEDDDDDVPTISGCSNSGIQYKCSSCEAMFNTVKDRVAHQALKHPKDRREEETKVVKRRTVKKLVLKSKKAGVKAENTFDNVFTNKLNVEENKADEEPVKLESATHNTSVASVVVNPTVCTICDAVVSDNTALQQHLSEVHNITNEERYKCSMCKEVFANESKYTAHLAIHPLECRLCGKFFYRRQNLQLHMKRHLGIRPYKCTVCDKSFLTRQKLEEHKNIHTGDSPIKCNLCDETFRRHSNLVQHKNRHHFNVKKKVKDYICTCGEIFHSKRKLAWHKEVHDNKPKACPYCSAKFIHASSLTRHVRRAHNDRFVPKEERSNENVQCPICNGVFLRASLDVHIKNHSGIKQFRCLICSKDFTTKWNLKLHKWTHAARAAKPFKCELCKGAFIRETDYTAHMNSHKSIRPYTCNYCGAQFNRKYNCQRHVKEHVKVKNFNCQICGKSFHRSYYLKDHMRIHSGDRPYACHICGKSSNSKSNHNKHVKTHHAREPVSTEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01058596;
90% Identity: iTF_01058596;
80% Identity: -