Basic Information

Insect: Nicrophorus investigator
Gene Symbol: -
Assembly: GCA_963457615.1
Location: OY735143.1:2163246-2166266[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.3 3.9e+02 2.1 0.1 2 23 7 28 6 28 0.91

2 15 0.34 31 5.6 0.5 1 23 528 551 528 551 0.92

3 15 0.01 0.93 10.3 0.1 2 23 626 648 625 648 0.93

4 15 4.1e-05 0.0037 17.9 0.3 1 23 656 678 656 678 0.98

5 15 5.4e-06 0.00049 20.6 2.2 2 23 681 702 680 702 0.97

6 15 0.0012 0.11 13.3 1.4 1 23 708 730 708 730 0.98

7 15 4.5e-05 0.0041 17.8 5.3 2 23 737 758 736 759 0.95

8 15 0.4 36 5.3 1.1 5 23 772 790 771 790 0.95

9 15 2.1e-05 0.0019 18.8 0.6 3 23 797 818 796 818 0.97

10 15 0.13 12 6.8 0.0 2 23 834 854 833 854 0.96

11 15 0.0002 0.019 15.7 1.5 1 20 860 879 860 882 0.92

12 15 0.00028 0.026 15.2 0.4 1 23 890 912 890 912 0.99

13 15 0.00075 0.068 13.9 4.4 1 23 918 940 918 940 0.98

14 15 4.7e-07 4.3e-05 24.0 3.6 1 23 946 968 946 968 0.98

15 15 0.0016 0.15 12.8 7.0 1 23 974 996 974 997 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.3	3.9e+02	2.1	0.1	2	23	7	28	6	28	0.91
2	15	0.34	31	5.6	0.5	1	23	528	551	528	551	0.92
3	15	0.01	0.93	10.3	0.1	2	23	626	648	625	648	0.93
4	15	4.1e-05	0.0037	17.9	0.3	1	23	656	678	656	678	0.98
5	15	5.4e-06	0.00049	20.6	2.2	2	23	681	702	680	702	0.97
6	15	0.0012	0.11	13.3	1.4	1	23	708	730	708	730	0.98
7	15	4.5e-05	0.0041	17.8	5.3	2	23	737	758	736	759	0.95
8	15	0.4	36	5.3	1.1	5	23	772	790	771	790	0.95
9	15	2.1e-05	0.0019	18.8	0.6	3	23	797	818	796	818	0.97
10	15	0.13	12	6.8	0.0	2	23	834	854	833	854	0.96
11	15	0.0002	0.019	15.7	1.5	1	20	860	879	860	882	0.92
12	15	0.00028	0.026	15.2	0.4	1	23	890	912	890	912	0.99
13	15	0.00075	0.068	13.9	4.4	1	23	918	940	918	940	0.98
14	15	4.7e-07	4.3e-05	24.0	3.6	1	23	946	968	946	968	0.98
15	15	0.0016	0.15	12.8	7.0	1	23	974	996	974	997	0.95

Sequence Information

Coding Sequence: ATGGAGGGTGGCACTCAGACTTGTCCGGTCTGCACCTTGTACCTGAGACCAGGTATTTCGCTGAAGGAGCATCTAACGAGTCATCCAAAACAGAAAGTGATAGAGGCATTGGTGAAGCTCTCCAATGTTGAGCCAGACAGGCAAATTGCCACAGCATCGAGCAGCATCCAACCTGGTACTAGTCAGCAGCAATGGAACCTGCCAATGAATGCTCAACCCATGCATGCCAATCATTCGTTCATCTATCAACAGTTTATGAGTTCAACGACGCCGCAGCCCAATGTGCTGGGCGTCAACCATCTAGGACAGCAGTATGTCACGATACCAACCGTCTTCAATCCTCAGATGATGTGCCCTCCACCGCCCTACTTGtatcagcagcagcaggtcTTTATGTCGTCGGGTGGACAGCAGCTAGCCGCGATGCCAAAACCTTTACCTATTGACAATTTGCAGGAGCAGGTCTCTACACTCATTGACGACGATGAAGTTGTGGAGCAGCAACAGCAGGTAGAAGAGGGGGACGATGAGGATATCCATAACGTGGAAGATGACGAGgcggaggaggaagaggaagaTGATTTGGATAGTAGCAAGAAAGAAATGGATGGATTTGAGGTGGAGAGCGACATCAAGGACACCGTGATTATACAAGGCGATACTATAATTGAACCGGGTCAGGTCGATTTGAATTACGTCGTGCCACTGGCTCCTCTTTCTCCACAGTCTCATCGTCCTCCTCATTCCATCAAAGATTCTGCTGAGAacgatgaaataaatttcgaGAAAGATCTGAACAAATCATGTCAGACGACGCACGATGAAACTGATATATTTATCGACAAGGAGGACATCGTTGATGAACCAAaagaggatgatgatgatgatgatgaagatgaagaagatgaaaataGAGAACATTTAGTAGAAGAAGAGGATGAGGAGATCGACGAGGAAGAGGAAGAGGATGAAGACGACGATGAGGACGAAGATGATGAAGACGACGATGAGGATGAAGACGAAGAGGAACATGTGACCACCGCGAATTACATTACTCTTATTAGCCACGAGGAGGCGATGGCCGCAAACGATGAGAACGTGGCGCAGCACAACAACAGCATGATAATGGACATGGATGGTATGAACTTGATGATCAATTCCGATGTGCGGCAGCCGACGGCATCGACTCCGGTCGAAGATTTCGATTACATTAATCGCTACGATCGGCAGACGGCGGGTCCAAAGATCAGCATCCACGAGAACGGCGACGAGAGCGTGTCCGTGGATAGCGCAAACATACGAGCCGATGAGCACATGCCACCCAGAGGAGAACTATCCGGACAGGAGAGCAACGCGAGCGACGTGCCTTGGTCGAGGATGCATTACCACGAGGGCAATTCGGCGACATCTACCAGCTACAATACCGATATTAACGTACAAGACGGATGGGACGGTTCGTCGGACATATCCAATGGGGAAGTACCGCCACTCCAAAGCAGAGTTCCTCCAGCATACGAGGAAGACGAGGACGATGACGACGACGTTCCTACTATTTCCGGATGCTCTAATTCGGGCATACAATACAAATGCTCTAGTTGTGAGGCGATGTTCAACACTGTCAAGGACCGAGTCGCTCATCAAACGGAAAAGCATCCGAAGGATAGGAGAGAGGAGACTAAAGTTGTTAAGAGAAAGACTGTGAAGAAGTTGATTGTGAAATCGAAAAAGACCAGCATAAAAACCGAAAATACGTTCGACAACGTCTTCACCAATAAGCTTAACGTGGATGAGAATAAAGACGACGAGGAGGAGTCTGTAAAGATGGAATCCTCTTCGAACAATAGCAGCATCGTCTCGGTGGTGGTGAACCCAACCGTATGCACAATATGTGATGCCGTAGTGTCGGACAACACCGCTCTACATCAGCATCTCTCAGAAGTACACAACATCACCAACGAGGAGAGGTACAAGTGCAGCATGTGCAAAGAGGTTTTCGCCAACGAGTCCAAGTATACGGCCCACCTGGCCATTCATCCTCTGGAGTGCCGTTTGTGCGGTAAATTCTTTTACCGTCGGCAGAACCTGCAGTTGCACATGAAGAGGCACCTGGGAATCAGGCCGTACAAGTGCACCGTATGCGAGAAAAGTTTCCTAACCAGGCAGAAGTTGGAGGAgcacaaaaatattcataccGGTGACTCACCGATCAAGTGCAATCTGTGCGACGAGACGTTCAGGCGACATTCAAACCTGGTGCAGCACAAGAATCGACATCATTTTAACGTGAAGAAGAAGGTGAAAGACTACATATGTACCTGCGGCGAGATCTTCCACTCGAAGAGGAAGCTCGCGTGGCACAAGGAGGTGCACGACAACAAGCCGAAGGCGTGTCCCTATTGCAGCGCCAAGTTCATCCATGCCTCGAGCTTGACGAGGCACGTGCGACGTGCCCACAATGATCGGTTCGTACCTAAGGAAGAGCGTAGCAACGAGAACGTCCAGTGTCCCATCTGCAACGGTGTATTCCTGCGGGCCTCGCTGGACGTGCACATCAAGAATCACAGCGGCATCAAACAATTTCGCTGCTTAATCTGCAGCAAAGAGTTCACCACGAAATGGAACTTGAAACTGCACAAATGGACTCACGCGGCTCGCGCCGCCAAACCTTTCAAATGTGATTTGTGCAAGGGGGCCTTCATCCGTGAGACGGACTACACGGCCCACATGAACTCGCACAAATCGATCCGGCCGTACACCTGCAATTACTGCGGCGCCCAATTTAATCGCAAGTACAATTGCCAGAGGCACGTCAAAGAACACGTCAAGGTTAAGAACTTCAATTGCCAAATCTGCGGTAAGAGCTTTCACAGGTCATACTACCTGAAGGATCACATGCGCATTCACAGCGGCGATCGGCCTTACGCCTGTCACATCTGCGGTAAGTCCTCCAACTCGAAGAGTAACCACAACAAGCACGTGAAGACGCACCATGCCCGTGAACCCGTCAGCACCGAGATCTGA
Protein Sequence: MEGGTQTCPVCTLYLRPGISLKEHLTSHPKQKVIEALVKLSNVEPDRQIATASSSIQPGTSQQQWNLPMNAQPMHANHSFIYQQFMSSTTPQPNVLGVNHLGQQYVTIPTVFNPQMMCPPPPYLYQQQQVFMSSGGQQLAAMPKPLPIDNLQEQVSTLIDDDEVVEQQQQVEEGDDEDIHNVEDDEAEEEEEDDLDSSKKEMDGFEVESDIKDTVIIQGDTIIEPGQVDLNYVVPLAPLSPQSHRPPHSIKDSAENDEINFEKDLNKSCQTTHDETDIFIDKEDIVDEPKEDDDDDDEDEEDENREHLVEEEDEEIDEEEEEDEDDDEDEDDEDDDEDEDEEEHVTTANYITLISHEEAMAANDENVAQHNNSMIMDMDGMNLMINSDVRQPTASTPVEDFDYINRYDRQTAGPKISIHENGDESVSVDSANIRADEHMPPRGELSGQESNASDVPWSRMHYHEGNSATSTSYNTDINVQDGWDGSSDISNGEVPPLQSRVPPAYEEDEDDDDDVPTISGCSNSGIQYKCSSCEAMFNTVKDRVAHQTEKHPKDRREETKVVKRKTVKKLIVKSKKTSIKTENTFDNVFTNKLNVDENKDDEEESVKMESSSNNSSIVSVVVNPTVCTICDAVVSDNTALHQHLSEVHNITNEERYKCSMCKEVFANESKYTAHLAIHPLECRLCGKFFYRRQNLQLHMKRHLGIRPYKCTVCEKSFLTRQKLEEHKNIHTGDSPIKCNLCDETFRRHSNLVQHKNRHHFNVKKKVKDYICTCGEIFHSKRKLAWHKEVHDNKPKACPYCSAKFIHASSLTRHVRRAHNDRFVPKEERSNENVQCPICNGVFLRASLDVHIKNHSGIKQFRCLICSKEFTTKWNLKLHKWTHAARAAKPFKCDLCKGAFIRETDYTAHMNSHKSIRPYTCNYCGAQFNRKYNCQRHVKEHVKVKNFNCQICGKSFHRSYYLKDHMRIHSGDRPYACHICGKSSNSKSNHNKHVKTHHAREPVSTEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01059269;
90% Identity: iTF_01059269;
80% Identity: -