Basic Information

Insect: Nicrophorus vespilloides
Gene Symbol: -
Assembly: GCA_001412225.1
Location: NW:101771-110824[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0026 0.18 11.8 0.6 2 23 188 210 187 210 0.97

2 20 0.54 37 4.5 0.3 1 21 347 367 347 368 0.94

3 20 6.4 4.4e+02 1.1 0.5 6 21 431 446 429 447 0.87

4 20 0.00034 0.023 14.5 4.3 2 23 553 574 553 575 0.95

5 20 3.4e-05 0.0023 17.7 0.4 2 23 585 606 584 606 0.96

6 20 0.002 0.13 12.1 0.2 2 23 611 633 610 633 0.94

7 20 3e-06 0.0002 21.0 0.2 1 23 644 667 644 667 0.96

8 20 0.00014 0.0092 15.8 0.5 1 23 669 691 669 691 0.97

9 20 1.3e-05 0.00089 19.0 0.1 3 23 712 732 711 732 0.97

10 20 0.013 0.92 9.5 3.7 1 23 752 775 752 775 0.95

11 20 0.19 13 5.9 0.0 3 23 788 808 787 808 0.96

12 20 0.00039 0.027 14.3 5.3 2 21 833 852 832 854 0.94

13 20 0.72 49 4.1 2.2 3 23 876 896 876 896 0.96

14 20 0.0073 0.5 10.3 2.1 1 23 921 944 921 944 0.92

15 20 3.1e-05 0.0021 17.8 0.2 1 23 952 974 952 974 0.96

16 20 5.4 3.7e+02 1.3 1.1 1 23 996 1019 996 1019 0.88

17 20 0.0009 0.061 13.2 0.2 1 23 1031 1053 1031 1053 0.98

18 20 3.1e-06 0.00021 21.0 1.3 2 23 1064 1086 1063 1086 0.95

19 20 4.8e-05 0.0033 17.2 0.7 1 23 1095 1117 1095 1117 0.98

20 20 0.00063 0.043 13.7 0.1 1 23 1133 1156 1133 1156 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0026	0.18	11.8	0.6	2	23	188	210	187	210	0.97
2	20	0.54	37	4.5	0.3	1	21	347	367	347	368	0.94
3	20	6.4	4.4e+02	1.1	0.5	6	21	431	446	429	447	0.87
4	20	0.00034	0.023	14.5	4.3	2	23	553	574	553	575	0.95
5	20	3.4e-05	0.0023	17.7	0.4	2	23	585	606	584	606	0.96
6	20	0.002	0.13	12.1	0.2	2	23	611	633	610	633	0.94
7	20	3e-06	0.0002	21.0	0.2	1	23	644	667	644	667	0.96
8	20	0.00014	0.0092	15.8	0.5	1	23	669	691	669	691	0.97
9	20	1.3e-05	0.00089	19.0	0.1	3	23	712	732	711	732	0.97
10	20	0.013	0.92	9.5	3.7	1	23	752	775	752	775	0.95
11	20	0.19	13	5.9	0.0	3	23	788	808	787	808	0.96
12	20	0.00039	0.027	14.3	5.3	2	21	833	852	832	854	0.94
13	20	0.72	49	4.1	2.2	3	23	876	896	876	896	0.96
14	20	0.0073	0.5	10.3	2.1	1	23	921	944	921	944	0.92
15	20	3.1e-05	0.0021	17.8	0.2	1	23	952	974	952	974	0.96
16	20	5.4	3.7e+02	1.3	1.1	1	23	996	1019	996	1019	0.88
17	20	0.0009	0.061	13.2	0.2	1	23	1031	1053	1031	1053	0.98
18	20	3.1e-06	0.00021	21.0	1.3	2	23	1064	1086	1063	1086	0.95
19	20	4.8e-05	0.0033	17.2	0.7	1	23	1095	1117	1095	1117	0.98
20	20	0.00063	0.043	13.7	0.1	1	23	1133	1156	1133	1156	0.94

Sequence Information

Coding Sequence: ATGGCACAGGCGAAGATCGGAAATTACAGTTCATGCTGTCGGCTATGCTTGAGCGAGAAGAACAACTACTTGAACAACATCTATGCCGGATACACGGAGTCGCACGGCCTGGTCGACAAGATCGGTACGCTGGTCGGAGTGCAGattaCACAGACCGACAAACTGTCGACGATGCTCTGCGACAAATGCTACTTAACGATAAACAACTTCGCTGAATTCAAGAAGGCGTGCCACTCGAATCAGGGCAAGCTGCAGAAGTGGATGACTACCATCAACGACAATATTACGAACGGGacaattaaaatcaaagacGAACCGGTCGATGAGCCAAAAGATGACGAGGTTTCAGCAGTTGGTAAACCCGAAAATATGAGAGTCGTGGTAAAGTCTGAACCGGCGGAACCTATGGAAGAGGAGTTCTTCGATTATCCACCCGCATTGACGCCGCATCCTCCTGAGATTGTAATGGACGTCGACAATGATTCACAATTGGAGGAAGCCGAGAGTACGATAGATGTTAGTAAGGATGCGTCCATTAATAAATCGGTGGGAGTGACGAATCAATGTAGTGTGTGCGAAAAAATATTGAGCAATCCTGGGAATAGAAAAAAGCATGAAAAAACTATGCATGGCCTTCATGGTGGGAAGCTGCGAAAGGTCGAATCTAACGCCCCAGTTAAAGTTGTTGCTGAACCCAAGAAGTCTACCGGTAGTTCTTTCCTGAATAACAAAGAGGTGACGTTGACGCGCATCAACAAGGAATCCAAAGAAGTGGCGATCCCGCGGCCGACGACGCCTTCGATCCTGGATAAAGACCACGAGAAGATTAAGTTCGCAGCCGGTCTTCGTCTTCAATCGAAGTCGGCGCCGAGGCAGATGCAGTCTTCGCTCACCAAAATCGAGAAGACTTATTTGGAAAAGTGCCGGATCATGATTTCCATGTTCCAGAAGGACACCTGCGCCTGTCACAACCAGTACTTCAGCACACAGAAGAGGATGCTCGGACATCTGAGGCAACTCTTCGTTTGGTTTCCACCGTACACGTGCTACAACTGTTTGTTAACATTTGACGGTAGATCGGGAAAGATGAGGCATATTCTCAGATGTCCGCGAGTCGAGTTGGAATCTCTGATAAGGTTATCGGAACTTCGAGCTCGGACTAAAGATAAAATACGTTTATACCAAAACTTCAAGTGCATAcagtgtaattatttgttcagCTTCTACGAAGATTACTGCTCGCACGTTGATAACACACACGTAACAGAGGATGGTCCGTTCGATTGCCTCTGCATGCAGAGCTTCGAAAACGCCGACCTATTCCGTCAGCATATACACAAATCCTGCTTCCTGAACTACTACTGCGACATCTGCTTCTTGCTCACCTCCAATCTGCAGGAATTCGTGGAGCACTGCGAGGAGTTCCACGACACGGACGAGAACTATGTTTTCCTGAAACCGCACGCAAACTTCAGAGTGCTCACGAACATCGAAATCAACAATTGCCTTCTGGAAAGCAAGAAGCGGTTGCTGGAGAAGGAAGCGTCTGAAATGGAGGAACCCGATGAAATGCAAATGGATATTAATGTAGAAATGCCGAATATCGATCCGCTCATAGAATTAGATGAGAAGCATTTTTCCAGGTTTAACAGCGCCAAGTGTCCGCGTTGCAATAAGGTTTACGCGAATTATCATAACATGGTTAGGCATCTGAAGTCGCATCACAGGTTTGATTTGATGCAGAAGCGCACTGAGTGCGAGATCTGCGGTAACGTGTTCAGCAATTACTCGAATATGATGAGACATAAGAAGGCGCATTGCGACGCGTTAAAATGTTCCGAATGTTTGGAGGTTTTTACTTCGGTGGCGCTGTTGAAGACGCACCAGAGTCAAGCTCATGCGGATACTGTTAAGGTAGCCAGGACGACGTACAGATGCGAGGAATGCGGGGAGTCATTCAAGAGCGCTCGATGGTTGGAGCAGCATCAGGAGAATGAGCATGGGTTTGCGTGTGAGCAATGCGATAAAGTTTTGAAGACTGTCTCCGATTACGAGCAGCATCGAAACACCCATCTGAACATTACCCTAGCCAGAGACCCGAAGACGAAAAGCTACCATCGTCTCAGCAAGATTTGTAAGATCTGCGATAAAGGCTTCAATACGGAATCGGAACTCGAGgaacatttacaattacatgAACGAATGCCAGTCCTCGAAGCCGAAGATGATGAAAGCATTGAAGACGACAAGAAGCACAGTTGTAACGAGTGCGGAAGGCATTATCAGAGTTCACGCGGGTTGTGGGTGCACAACAAGAAGTACCATCCGGACAAGAAAGGTAAAATGGACTTCCCGAGGCCGTGCGACGAGTGTGATCGAGTGATTTACTCGCTTTCCGGTTGGGTGATGCACAAGCAGATGCACGATCGCACCAATAAATTGCAGAAATCTATAAAAACACAACCTGCTAACCCCAACGATGATTCAGATTACTCGACCTGCAAAAAGTGTTTCAAGGTGTTCGCCAATCGTTCAACGCTGAAAACGCACATGAAGTGCCACGGTATCAACACCAGCCCGACGAGGACGCAGATGAAGACCGGAAAGTTTATGAAGACCATCTGGTGCGATATATGTCATCAGGCGTGTCAGGGCGTCGATGAACTGAAAAAGCACAAGCTCGAGCACGAAAGCGAAGATCTGACGGAACCCGAGGAAGGCGAGATTGCGACGAAGCCAGTACTTAAACCTGGAAAGCAACACGACTGTAAACTTTGCAAGCTCTCCTTCGACACGTCGAACCAATGGAATGACCATATGTTTAACGATCACAGCGAAAATAACACTCCCAAATTCGAGTGCGATACCTGCGGCAAAGTGTTCAATTCAAATCTGGCGTTGAACGTCCACTATTCCTGGCACAAAAGGGCACAACGGAAGGCTGCTGCTGCCGCAACGGCCACCCCCCAGCACAAAACGCAAATGTTTAAGTGCATATCTTGTGCCAAGCAATTCGAAGATGACACCGCGCTGCAGCTGCACATCTTCGAATGCCACAGGAAGACATCCACGACCATCGAGAGGCGGATATTCAAATGCGAGCCCTGCGACTTGAGTTTCACCGTGCAGAGCGAGTACGACGCCCACGAGAGGACGCACGAAAAGGTGAAAGACAAGAAGGCAGGAGTGACATGCAAGTTCTGTGACAAAACTTTTAGTCGCAGCGACTATCTCAACATCCATATTACCAGCAAACATCCGCAGCACGCGGTCGCAGGACAATTCAAGTGCACGCAGTGCGAAAGGATCTTCGAGAAACAGAACGCACTCACCATTCATTTGAAGGTGCACGAGAAGATGAACGTTACCGTCAGCAAACCGACCAAAGCCCACAAGTACTCGTGCTCGATTTGTCACGTCGGTTTCGACGTTCCCAAAGAACTCAGAAATCATATAATAGCTCTACATCCATTCTAA
Protein Sequence: MAQAKIGNYSSCCRLCLSEKNNYLNNIYAGYTESHGLVDKIGTLVGVQITQTDKLSTMLCDKCYLTINNFAEFKKACHSNQGKLQKWMTTINDNITNGTIKIKDEPVDEPKDDEVSAVGKPENMRVVVKSEPAEPMEEEFFDYPPALTPHPPEIVMDVDNDSQLEEAESTIDVSKDASINKSVGVTNQCSVCEKILSNPGNRKKHEKTMHGLHGGKLRKVESNAPVKVVAEPKKSTGSSFLNNKEVTLTRINKESKEVAIPRPTTPSILDKDHEKIKFAAGLRLQSKSAPRQMQSSLTKIEKTYLEKCRIMISMFQKDTCACHNQYFSTQKRMLGHLRQLFVWFPPYTCYNCLLTFDGRSGKMRHILRCPRVELESLIRLSELRARTKDKIRLYQNFKCIQCNYLFSFYEDYCSHVDNTHVTEDGPFDCLCMQSFENADLFRQHIHKSCFLNYYCDICFLLTSNLQEFVEHCEEFHDTDENYVFLKPHANFRVLTNIEINNCLLESKKRLLEKEASEMEEPDEMQMDINVEMPNIDPLIELDEKHFSRFNSAKCPRCNKVYANYHNMVRHLKSHHRFDLMQKRTECEICGNVFSNYSNMMRHKKAHCDALKCSECLEVFTSVALLKTHQSQAHADTVKVARTTYRCEECGESFKSARWLEQHQENEHGFACEQCDKVLKTVSDYEQHRNTHLNITLARDPKTKSYHRLSKICKICDKGFNTESELEEHLQLHERMPVLEAEDDESIEDDKKHSCNECGRHYQSSRGLWVHNKKYHPDKKGKMDFPRPCDECDRVIYSLSGWVMHKQMHDRTNKLQKSIKTQPANPNDDSDYSTCKKCFKVFANRSTLKTHMKCHGINTSPTRTQMKTGKFMKTIWCDICHQACQGVDELKKHKLEHESEDLTEPEEGEIATKPVLKPGKQHDCKLCKLSFDTSNQWNDHMFNDHSENNTPKFECDTCGKVFNSNLALNVHYSWHKRAQRKAAAAATATPQHKTQMFKCISCAKQFEDDTALQLHIFECHRKTSTTIERRIFKCEPCDLSFTVQSEYDAHERTHEKVKDKKAGVTCKFCDKTFSRSDYLNIHITSKHPQHAVAGQFKCTQCERIFEKQNALTIHLKVHEKMNVTVSKPTKAHKYSCSICHVGFDVPKELRNHIIALHPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01058587;
90% Identity: -
80% Identity: -