Ninv014209.2
Basic Information
- Insect
- Nicrophorus investigator
- Gene Symbol
- -
- Assembly
- GCA_963457615.1
- Location
- OY735144.1:4358962-4365715[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0016 0.14 12.9 0.6 2 23 189 211 188 211 0.97 2 21 1 92 4.1 0.3 1 21 341 361 341 362 0.94 3 21 0.64 59 4.7 3.1 1 23 391 414 391 414 0.92 4 21 9.4 8.6e+02 1.0 0.6 6 21 425 440 423 441 0.89 5 21 0.00047 0.043 14.5 4.0 2 23 547 568 546 569 0.95 6 21 8.8e-05 0.008 16.8 0.5 3 23 580 600 578 600 0.96 7 21 0.00053 0.048 14.4 0.2 2 23 605 627 604 627 0.94 8 21 4.1e-06 0.00037 21.0 0.2 1 23 638 661 638 661 0.96 9 21 0.00014 0.012 16.2 0.2 1 23 663 685 663 685 0.97 10 21 5.1e-05 0.0046 17.6 0.1 3 23 706 726 705 726 0.96 11 21 0.074 6.7 7.6 0.6 3 23 748 769 747 769 0.96 12 21 0.23 21 6.1 0.1 2 23 781 802 780 802 0.96 13 21 0.00017 0.016 15.9 6.0 1 21 826 846 826 848 0.95 14 21 0.99 90 4.1 2.2 3 23 870 890 870 890 0.96 15 21 0.0028 0.25 12.1 1.4 2 23 916 938 915 938 0.95 16 21 4.2e-05 0.0039 17.8 0.2 1 23 946 968 946 968 0.96 17 21 3.7 3.3e+02 2.3 1.9 1 23 991 1014 991 1014 0.88 18 21 0.0028 0.25 12.1 0.3 1 23 1026 1048 1026 1048 0.98 19 21 1e-05 0.00091 19.8 1.2 2 23 1058 1080 1057 1080 0.96 20 21 4.8e-05 0.0044 17.7 0.6 1 23 1089 1111 1089 1111 0.99 21 21 0.00087 0.079 13.7 0.1 1 23 1127 1150 1127 1150 0.94
Sequence Information
- Coding Sequence
- ATGGCAGCAGAAGCGAAGATCGGAAATTACAGTTCATGCTGTCGGCTATGCTTGAGCGAGAAGTACAACTACTTGAACAACATCTATGCCGGATACACGGAGTCGCACGGCCTGGTCGACAAGATCGGCACGCTGGTCGGAGTGCAGattaCACAAACCGACAAACTGTCGACGATGCTCTGCGACAAATGCTACTTAACGATAAACAACTTCGATGAATTCAAGAAGGCGTGCCATTCGAATCAGGGCAAGCTGCAGAAGTTGATGACTTCCATCGATGACCAAATCGCGAACGGGacAATTAAAATCAAGACCGAACCTGTGGATGAGCCCAAAAATGATGAGGTTTCAGCAGTTGCGGTACCAGAGAATGAGAAGGTCGTGGTGAAGTCGGAGCCCGCAGAACCTGTGGAAGAGGAGTTCTTCGATTATCCACCTGCATTGACGCCGCATCCTCCTGAGATTGTGATGGACGTCGACAACGATTCTCAATTGGAGGAAGCTGAAAGCACGATAGATGTTAGTAAGGATGCGTCCATTAATAAATCGGTGGGAGTGACGAATCAATGTAGTGTGTGCGAAAAAATATTGAGCAATCCTGGGAATAGAAAAAAGCATGAAAGAACTATGCATGGCCTTCATGGTGGGAAGCTGCGAAAGGTCGAATCTAACGCCTCAGATAAAGTTGCTGAATCCAAGAAGACTTCCGGTAGTTCGTTTCTGAATAGCAGCGAGGTGACGCTGACGCGTATCAACAAGGAGCCCAAAGAGGTTTCGCAGTCGGTCCTGGATAAGGATCACGAAAAGATTCAGTTCGCTGCCGGTCTTCGTCTTCAATCGAAATCGGCGCCGAAGCAGCTGCAGTCTCCGCTCACCAAAATCGAGAAGAAGTATTTGGAAAAGTGCCGGATCATGATTTCCATGTTCCAGAAGGACACCTGCGCCTGTCACAACCAGTACTTCAGCACGCAGAAGAGGATGCTCGGACATCTGAGGCAACTCTTCTCTTGGTTTCCTCCGTACACATGTTACAACTGTTTGTTAACATTCGACGGAAGATCGGGAAAGATGAAGCACATTCTCAGATGTCCGCGAGTCGAGATGGAATCTCTCATAAGGTTGTCGGAGCTTCGAGCTCGGACCGAGCATAAAATACGATTGTACCAGAACTTCAAGTGCTTAcagtgtaattatttattcagcttCTACGAAGATTACTGCTCGCACGTTGATAACGCGCACGTGGTAGAGGATGGTCCGTTTGACTGCCTCTGCTTGCAGAACTTCGAAAACGCCGACTTATTCCGTCAGCATATACACAAATCCTGCTTCCTGAACTACTACTGCGACATCTGCTTCTTGCTCACTTCCAATCTGCAGGATTTCGTGCAGCACTGCGAGGAGTTCCACGATACTGACGAGAACTACGTTTTCCTGAAACCGCACGATAACTTCAGAGTGCTCACGAACATCGAAATCAACAATTGTCTTCTGGAGAGCAAGAAGCGGTTGCAGGAGAAGGAAGCGGCTGAAATGCAGGAACCCGATGATATGCAGGTGGATATCAATGTGGAGATGCCGACGATAGATCCGATCGTCGATATAGATGAGAAGGAGGAAGCCAAATTTGCCAACGTCAAGTGTCCGCGCTGCAAGAAGGTTTACGCGAATTACCACAACATGGTGAGGCATCTTAAGTCGCATCACAGTTTCGATTTGGTGCAGAAGCGCACCGATTGCGATATCTGCGGTAACGTCTTCAGCAATTACTCGAATATGATGAGACATAAGAAGGCCCATTGCGATTCGTTGAAGTGTTCCGAATGTACGGAGGTTTTTACTTCGGTAGCCCTGCTAAGGACGCATCAGAGTCAAGCTCACGCGGCTACTGTTAAGGTAGTCCGGACGACGTACAGATGCGAGGAATGCGGGGAGTCTTTCAAGAGCGCTCGATGGTTGGAGCAGCATCAGGAGAATGAACATGGATTCGCGTGCGAAGAATGCggaaaaatcttgaaaaccGTCTCCGATTACGAGCAGCATCGAAACACCCATCTGAACATTATCCTGGCCAAAGATCCGAAGACGCAAAGTTACCATCGCCTTGGTAAGATTTGCAAGATCTGCGATAAAGGCTTTACCACGGATTCGGAACTCGAGGAGCATTTACTGTTACACGAGCGAATGCCCGTTCTCGAAGCGGAAGATGATGAAAGCCGCGAAGACAACAAGAAGCACGGTTGCTTAACGTGCGGTAAGAATTATCAGAGCTCGCGCGGGTTGTGGGTGCACAACAAGAAGTTTCATCCGGAGAAGAAGGGTAAGATGGAATTCCCGAAGCCGTGCGACGAGTGTGATCGGGTGATTTATTCGCTTTCCGGCTGGGTTATGCACAAGCAGATGCACGATCGCACCAATAAATTGCAGAAATCGATAAAAACGCAGCCTGCAAACAGCAACGACGATTCAGATTATTTCACCTGCAAGAAATGCTTCAAGGTGTTCGCCAATCGTTCCACTCTTAAAACGCACATGAAATGTCACGGCATCAACACCAGCCCGACGAGGACGCAGATGAAGACCGGAAAGTTCATGAAGACGATTTGGTGCGATATATGCCATCAGGCGTGTCAGGGCGTCGACGAGCTGAAGAAACACAAGCTGGAGCACGATACCGAAGATCTGACGGAACCCGAGGAAATCGAGATTGAAGCGAAGGCAGTACTTAAACCTTCAAAGCAACAAGAGTGTAAGCTTTGCTCGCTTTCCTTCGAAACGTTGAGCCAATGGAATGACCACATGTGCAACGTTCACAGCGAAAACAACGCACCCAAATTCGAGTGCGAAACCTGCGGCAAAGTCTTCAACTCGAATCTGGCGTTGAACGTTCACTATTCCTGGCACAAAAGGGCGCAACGGAAGCTTCTGGACCCTGCAACGGCCGCCGTCCCCCAGCAGCAAACGCAAAAATTCAAGTGCATATCCTGCGCCAAGAAATTCGAGGATGACACCTCGCTGCAGCTGCACATCTTCGAATGCCACAGGAAGACGTCCACGACCATCGAGAGGCGGATTTTCAAATGCGAACCGTGCGACTTGAGCTTCACCGTGCAGAGCGAGTACGACGCTCACGAGAAGACGCACGACAAATCCAAAGACAAGAAAGGAGTCACCTGCAAGTTTTGCAACAAGATCTTCAGCCGCAGCGACTATCTCAACATCCACATTACCACCAAGCATCCGCAGCACGCGGTTGTCGGACAATACAAGTGCACGCAGTGCGAAAGGATCTTCGAGAAGCAGAACGCCCTCACCATTCATCTGAAGGTCCACGAGAAATTCAACGGCACCGTCAGCAAACCGACCAAAGTCCACAAGTACTCCTGCTCGATTTGCCACGTCGGCTTCGACGTTCCCAAAGAACTCAGAAATCACATAATAGCTCTACATCCCTTCTAA
- Protein Sequence
- MAAEAKIGNYSSCCRLCLSEKYNYLNNIYAGYTESHGLVDKIGTLVGVQITQTDKLSTMLCDKCYLTINNFDEFKKACHSNQGKLQKLMTSIDDQIANGTIKIKTEPVDEPKNDEVSAVAVPENEKVVVKSEPAEPVEEEFFDYPPALTPHPPEIVMDVDNDSQLEEAESTIDVSKDASINKSVGVTNQCSVCEKILSNPGNRKKHERTMHGLHGGKLRKVESNASDKVAESKKTSGSSFLNSSEVTLTRINKEPKEVSQSVLDKDHEKIQFAAGLRLQSKSAPKQLQSPLTKIEKKYLEKCRIMISMFQKDTCACHNQYFSTQKRMLGHLRQLFSWFPPYTCYNCLLTFDGRSGKMKHILRCPRVEMESLIRLSELRARTEHKIRLYQNFKCLQCNYLFSFYEDYCSHVDNAHVVEDGPFDCLCLQNFENADLFRQHIHKSCFLNYYCDICFLLTSNLQDFVQHCEEFHDTDENYVFLKPHDNFRVLTNIEINNCLLESKKRLQEKEAAEMQEPDDMQVDINVEMPTIDPIVDIDEKEEAKFANVKCPRCKKVYANYHNMVRHLKSHHSFDLVQKRTDCDICGNVFSNYSNMMRHKKAHCDSLKCSECTEVFTSVALLRTHQSQAHAATVKVVRTTYRCEECGESFKSARWLEQHQENEHGFACEECGKILKTVSDYEQHRNTHLNIILAKDPKTQSYHRLGKICKICDKGFTTDSELEEHLLLHERMPVLEAEDDESREDNKKHGCLTCGKNYQSSRGLWVHNKKFHPEKKGKMEFPKPCDECDRVIYSLSGWVMHKQMHDRTNKLQKSIKTQPANSNDDSDYFTCKKCFKVFANRSTLKTHMKCHGINTSPTRTQMKTGKFMKTIWCDICHQACQGVDELKKHKLEHDTEDLTEPEEIEIEAKAVLKPSKQQECKLCSLSFETLSQWNDHMCNVHSENNAPKFECETCGKVFNSNLALNVHYSWHKRAQRKLLDPATAAVPQQQTQKFKCISCAKKFEDDTSLQLHIFECHRKTSTTIERRIFKCEPCDLSFTVQSEYDAHEKTHDKSKDKKGVTCKFCNKIFSRSDYLNIHITTKHPQHAVVGQYKCTQCERIFEKQNALTIHLKVHEKFNGTVSKPTKVHKYSCSICHVGFDVPKELRNHIIALHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01059265;
- 90% Identity
- -
- 80% Identity
- -