Nves009217.1
Basic Information
- Insect
- Nicrophorus vespilloides
- Gene Symbol
- -
- Assembly
- GCA_001412225.1
- Location
- NW:316362-319288[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6.4e-06 0.00044 20.0 3.8 2 23 121 142 120 142 0.97 2 15 0.041 2.8 8.0 1.3 3 23 146 166 145 166 0.97 3 15 6e-07 4.1e-05 23.2 0.6 1 23 204 226 204 226 0.98 4 15 7.1e-06 0.00048 19.8 1.8 2 23 234 256 234 256 0.96 5 15 0.00097 0.066 13.1 3.8 2 23 269 291 268 291 0.95 6 15 0.00013 0.0088 15.9 8.0 1 23 348 370 348 370 0.96 7 15 3.4e-05 0.0023 17.7 1.1 1 21 376 396 376 399 0.89 8 15 2.8e-06 0.00019 21.1 3.4 1 23 404 426 404 426 0.98 9 15 1.3e-05 0.00087 19.0 1.6 2 23 435 456 434 456 0.97 10 15 1.8e-08 1.2e-06 28.0 3.1 1 23 463 485 463 485 0.98 11 15 1.2e-05 0.00078 19.2 1.6 3 23 497 517 495 517 0.92 12 15 9.8e-05 0.0067 16.2 5.7 1 23 523 545 523 545 0.99 13 15 4.8e-06 0.00032 20.4 1.8 1 23 551 573 551 573 0.96 14 15 8.6e-08 5.9e-06 25.9 0.3 1 23 579 601 579 601 0.99 15 15 0.00012 0.0082 16.0 0.1 1 23 607 631 607 631 0.93
Sequence Information
- Coding Sequence
- ATGGGCACGAAAATGAAAATGGATAAACTGTGCAGATCATGCATGTGTGTTGCCGGCGAAATACGGCAACTGTTCACAAGTGCAGGAGGCGAAGACGAAGATGATGCGACTAGCAAAGAGGTGGTGCAGCAGCACACTCACTTGGCTCAAATGATCATGGCCTGTTCAGATATTAAAatTGAAAGTGGAGATGGGTTACCAGCAGCTCTGTGTTTGCAGTGTGAAATGAAGGTGATCATTGCTTTTGACTTCAAACAACTGTGTGAAAAATCTGATGCCACACTTAGGGCTTCTATCAGTGGTACCACAGATGATATTGCATCAAGCTCATCTTGGCAAGATTTGATCAATGTAATGGATACTTGCTTGCATTGCGATAAACGTTTCAAATCTAATCAGAAGCTGGAGGAGCATATGAAAACCCATCAGACTTTGTGTGAGCattgcaatataaattttgatagtgTGGAGAAGCTGATGGAGCACAAAAAAGATCATGAAGTGAGCATTTTGGTGGTTAAGAATGAGGTGGAAGATGGCATGGACAATGAAGCTGATAATTATATAGATGAAACCATGGAACCGTCACCGGAGAACTTTGCTACGTCGTTCGAGTGCGAGCAGTGCGAGAAAGTTTTTAACTCGAAAATAGGTTTGAAGATTCATATGAGAAAGCATGGTGGTCAAGGAAGCGGCAACTCTTGCAGCATCTGCAGTAAGACATTTTCTAAGGCGTCGATGATGAAGAAGCACATGGAAACGACACACGAAGTGTATGAGGAGAAAAACGGAAAAAAAATCATGGAATGCGAATTCTGCGATCGAAAGTTCAAATACAAGAAGAGCTTCGATCACCACATGAGCAGCGAACATGGAATCGCAGAGGATGACGACGAGGATAGCGATACTCCATTGAGCGAATTCGTTAAGAATAGTTCATCTATGAACGAGGAGGACGTGTTGACTcctaaaattgaaatacaaatAGAAGAAGAGGTTGTAGATGATATGAAGGAGACGATCAAGAAGAGAGCCAAGTGTCACGAATGCCACGTATGCAATACGAAATTCTCTCGGACTAACCATTTGACCCGGCACATGACGCTGCACAGGGCCGTGCTAATCTTCAAATGTGACAAGTGCGATAAATCATTTGCAACGCAAGATTTCTTGGATAAGCACAACGAGGAAGATCACATCAACAAACCGTACACCTGCACCGTCTGTAAAAAAACTTTCAGCCGAGGAGAGCATCTCATCAGGCATCTCAAGCAGCACATGCCCACCATCACGGAGATGCTGCAGTGTTCAGTTTGCATGAAGGAGTTTAAAAGatcGGATCATCTTGCGCGGCATATTAAGATCCATCTTCAGCAGGATAAGAGGCACGTTTGCACGGAGTGCGGTAAAACGTTTAATCGATTAGACAATTTGAAGACGCACCAAAGGACACACACTGGACAAAAGTATAATGCCAAATTGCATTTGTGCATCTACTGCGGCAAAGAGTTTAATAATTCCAGTAACATGATCGTGCACATGCGTAGGCACACGGGAGAGAGGCCGTACAAGTGCAAACAGTGCGGCAAAGGTTTTCCAAGATCGCACGATCTAAAATGCCACGAGCGAACGCATTCTGGAGAGAAACCCTACCTATGTACTTTATGCGGTAAATCGTTTAACAAGAGCAACAAATTGTTGAGGCACACAAGAGTCCACACTGGGGAGAGGCCTTACGTGTGCAACCTCTGTGGGCGTGCCTTCACTCAGTCCAATGATCTTGCGCTGCACATGCGACGGCACACCGGATCACGTCCATATGCGTGCGGGGTGTGTCCAGCTCGATTCATCCAATCGGGACAATTGAAGACGCACAGGAAAACCACTGGCCATTGGATGGAAATACAGCCCGATTTAAAGGGCGGTCATCGGGTGGAGCCGGTGGTGGCCACCACCGATCTGACGCCGGTCAAGTTCAAGATGAGCGCGAAATACAAGGACGATCTGGAGGACGCGACGCATCAAGAAGAAGGGCATTCTAGCAATCAGGAGCAGTTGGTCGATGAAGTGCAGAGTAGAAGTGTTGTTCCTCAGTTCACCGTTGTCGATTTGCAGCAGTTTTCACCCGAGAAACCCAAAGATCATCCGGAGCAGAGCACATTCCACGCCTACACGGCCACACCCACCTCTAGTACCTTCACAGTAACTACCAGTGAACAGTTTCACTATCAGAGCTTCTAA
- Protein Sequence
- MGTKMKMDKLCRSCMCVAGEIRQLFTSAGGEDEDDATSKEVVQQHTHLAQMIMACSDIKIESGDGLPAALCLQCEMKVIIAFDFKQLCEKSDATLRASISGTTDDIASSSSWQDLINVMDTCLHCDKRFKSNQKLEEHMKTHQTLCEHCNINFDSVEKLMEHKKDHEVSILVVKNEVEDGMDNEADNYIDETMEPSPENFATSFECEQCEKVFNSKIGLKIHMRKHGGQGSGNSCSICSKTFSKASMMKKHMETTHEVYEEKNGKKIMECEFCDRKFKYKKSFDHHMSSEHGIAEDDDEDSDTPLSEFVKNSSSMNEEDVLTPKIEIQIEEEVVDDMKETIKKRAKCHECHVCNTKFSRTNHLTRHMTLHRAVLIFKCDKCDKSFATQDFLDKHNEEDHINKPYTCTVCKKTFSRGEHLIRHLKQHMPTITEMLQCSVCMKEFKRSDHLARHIKIHLQQDKRHVCTECGKTFNRLDNLKTHQRTHTGQKYNAKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCKQCGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHTRVHTGERPYVCNLCGRAFTQSNDLALHMRRHTGSRPYACGVCPARFIQSGQLKTHRKTTGHWMEIQPDLKGGHRVEPVVATTDLTPVKFKMSAKYKDDLEDATHQEEGHSSNQEQLVDEVQSRSVVPQFTVVDLQQFSPEKPKDHPEQSTFHAYTATPTSSTFTVTTSEQFHYQSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01058570;
- 90% Identity
- iTF_01058570;
- 80% Identity
- -