Ninv001488.1
Basic Information
- Insect
- Nicrophorus investigator
- Gene Symbol
- -
- Assembly
- GCA_963457615.1
- Location
- OY735140.1:7647869-7650512[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 8.9e-06 0.00081 20.0 3.8 2 23 119 140 118 140 0.97 2 15 0.14 13 6.7 2.9 3 23 144 164 143 164 0.97 3 15 8.3e-07 7.6e-05 23.2 0.6 1 23 204 226 204 226 0.98 4 15 8.2e-06 0.00074 20.1 1.9 2 23 234 256 234 256 0.97 5 15 0.0013 0.12 13.1 3.8 2 23 268 290 267 290 0.95 6 15 0.00018 0.016 15.9 8.0 1 23 347 369 347 369 0.96 7 15 7.3e-05 0.0067 17.1 1.1 1 21 375 395 375 398 0.89 8 15 3.9e-06 0.00036 21.1 3.4 1 23 403 425 403 425 0.98 9 15 1.8e-05 0.0016 19.0 1.6 2 23 434 455 433 455 0.97 10 15 2.4e-08 2.2e-06 28.0 3.1 1 23 462 484 462 484 0.98 11 15 1.6e-05 0.0015 19.2 1.6 3 23 496 516 494 516 0.92 12 15 0.00014 0.012 16.2 5.7 1 23 522 544 522 544 0.99 13 15 6.6e-06 0.0006 20.4 1.8 1 23 550 572 550 572 0.96 14 15 1.2e-07 1.1e-05 25.9 0.3 1 23 578 600 578 600 0.99 15 15 0.00017 0.015 16.0 0.1 1 23 606 630 606 630 0.93
Sequence Information
- Coding Sequence
- ATGGGaacgaaaatgaaaatggATAAGCTGTGCAGATCGTGCATGTGCGTTGCCGGAGAAATACGGCAATTGTTCACAAGTGCAGGAGGCGAAGATGTTTCAACGAGCAAAGATGTGGTGCTGCAGCACACACACTTGGCTCAAATGATCATGGCCTTTTCAAATATCAAAATTGAAAGCGGAGATGGGTTACCCACAGCTCTGTGTTTGCAGTGTGAAATGAAGGTGATCATTGCTTTTGACTTCAAACAACTGTGCGAGAAATCTGATGCTACATTTAGGGCTTCTCTCAATGGCAATGCAGATGGCATTGCTTCAAGCTCATCTTGGCAAGATTTGATCAATGCAATGGATACTTGCTTGCATTGTGATAAAAGGTTCAAATCTAATCAGAAGCTGGAGGAGCATATGAAAACTCATCAGACTTTGTGTGAGCATTGCAATATACATTTTGATAGTGTGGAGAAATTGATGGAGCACAAAAAGGATCATGAAGTGAGCATTTTGGTGGTTAAAAATGAGCTGGAAGATGcaatggatgatgatgatgatgataggGATTTTGGGGATGAAACTATGGAACCGTCACCGGAAAACTTTGCTACATCGTTCGAGTGCGAGCAGTGCGAGAAAGTTTTTAACTCGAAAATAGGTTTGAAGATTCATATGAGGAAACATGGTGGACAAGGAAATGGCAACACTTGCAGCATCTGCAGTAAGACGTTTTCTAAGGCGTCGATGATGAAGAAACACATGGAAACGACGCACGAAGTATACGAGAAGAGCGGAAAGAAAATCATGGAATGCGAATTTTGCGATCGAAAGTTCAAATACAAGAAAAGCTTCGATCACCACATGAGCAGCGAGCATGATATCGCAGAGGAGGATGACGAGGATAGTGATACTCCATTGAGCGAATTCGTTAAGAACAGTTCATCTATGAACGAGGAGGATGTGTTGACTcctaaaattgaaatacaaaTAGACGAGGAAGGAGTAGAAGAAATGAAGGAAACGATCAAGAAGAGAGCCAAGTGTCACGAATGCCACGTATGCAATACGAAATTCTCTCGGACAAACCATTTGACCCGACACATGACGCTGCACAGAGCCGTGCTGATCTTCAAATGTGATAAGTGCGATAAATCATTTGCAACGCAAGAGTTCTTGGACAAGCACAACGAGGAGGATCACATCAACAAACCGTACACATGCACCGTCTGCAAAAAAACTTTCAGCCGAGGAGAGCACCTCATCAGGCATCTCAAGCAGCACATGCCGACCATTACGGAGGTGCTGCAGTGTTCAGTCTGCATGAAGGAGTTTAAAAGGTCTGACCATCTTGCGCGGCATATTAAGATCCATCTTCAGCAGGACAAGAGGCACGTCTGCACGGAATGCGGTAAAACGTTTAATCGGTTGGACAATCTGAAGACGCACCAGAGGACGCACACTGGGCAAAAGTATAATGCCAAGTTGCATCTGTGCATCTACTGCGGCAAAGAGTTTAATAATTCCAGTAATATGatcGTGCACATGCGGAGGCACACGGGAGAGAGGCCTTACAAGTGCAAACAGTGCGGCAAAGGTTTTCCGAGATCGCACGATCTGAAATGCCACGAGAGGACGCATTCTGGAGAGAAACCCTATCTATGTACTTTATGCGGCAAATCGTTTAACAAGAGCAACAAATTGttgagACACACGAGAGTCCATACGGGGGAGAGGCCGTACGTGTGCAACCTCTGTGGGCGTGCCTTCACGCAGTCCAATGATCTTGCGCTACATATGCGACGGCATACCGGATCACGTCCATACGCATGCGGGGTGTGTCCTGCGCGCTTCATCCAATCAGGACAGCTGAAGACACACAGGAAAACGACCGGTCATTGGATGGAAATACAGCCAGACTTAAAGGGCGGTCATCGGGTGGAGCCTGTTGTTGCTACCACCGATCTGACGCCTGTAAAGTTCAAGATGAGCGCGAAGTACAAGGACGATCTGGAGGACGCGTCTCATGGTGAAGAAGGACAATCCAGCAATCAGGAACAATTGGTCGATGATGTGCAGAGTAGAAGGGTTGTGCCTCAGTTCACCGTTGTCGAATTGCAGCAAGCAGCGCCCGATAAACCCAAAGATCACACGGAGCAGAGCACATTCCACGCTTACACGGCCACACCCACATCTAGTACCTTCACAGTAACCACCAGTGAACAGTTTCAATACCAGAGCTTCTAA
- Protein Sequence
- MGTKMKMDKLCRSCMCVAGEIRQLFTSAGGEDVSTSKDVVLQHTHLAQMIMAFSNIKIESGDGLPTALCLQCEMKVIIAFDFKQLCEKSDATFRASLNGNADGIASSSSWQDLINAMDTCLHCDKRFKSNQKLEEHMKTHQTLCEHCNIHFDSVEKLMEHKKDHEVSILVVKNELEDAMDDDDDDRDFGDETMEPSPENFATSFECEQCEKVFNSKIGLKIHMRKHGGQGNGNTCSICSKTFSKASMMKKHMETTHEVYEKSGKKIMECEFCDRKFKYKKSFDHHMSSEHDIAEEDDEDSDTPLSEFVKNSSSMNEEDVLTPKIEIQIDEEGVEEMKETIKKRAKCHECHVCNTKFSRTNHLTRHMTLHRAVLIFKCDKCDKSFATQEFLDKHNEEDHINKPYTCTVCKKTFSRGEHLIRHLKQHMPTITEVLQCSVCMKEFKRSDHLARHIKIHLQQDKRHVCTECGKTFNRLDNLKTHQRTHTGQKYNAKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCKQCGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHTRVHTGERPYVCNLCGRAFTQSNDLALHMRRHTGSRPYACGVCPARFIQSGQLKTHRKTTGHWMEIQPDLKGGHRVEPVVATTDLTPVKFKMSAKYKDDLEDASHGEEGQSSNQEQLVDDVQSRRVVPQFTVVELQQAAPDKPKDHTEQSTFHAYTATPTSSTFTVTTSEQFQYQSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01059254;
- 90% Identity
- iTF_01059254;
- 80% Identity
- -