Basic Information

Gene Symbol
Ift140
Assembly
GCA_001412225.1
Location
NW:4908-17727[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00015 0.01 15.6 2.4 1 23 1904 1926 1904 1926 0.97
2 18 9.2e-05 0.0062 16.3 2.5 1 20 1932 1951 1932 1954 0.94
3 18 8.5e-06 0.00058 19.6 1.3 1 23 1960 1982 1960 1982 0.98
4 18 2e-05 0.0014 18.4 3.8 1 21 1988 2008 1988 2010 0.95
5 18 4.6e-05 0.0031 17.3 4.6 1 23 2016 2038 2016 2038 0.99
6 18 4.4e-05 0.003 17.3 5.3 1 23 2044 2066 2044 2066 0.97
7 18 1.5e-05 0.001 18.8 4.9 1 23 2072 2094 2072 2094 0.98
8 18 1.7e-07 1.2e-05 24.9 2.7 1 23 2100 2122 2100 2122 0.98
9 18 0.00013 0.0086 15.9 6.7 1 23 2128 2150 2128 2150 0.97
10 18 1.4e-05 0.00097 18.9 5.6 1 23 2156 2178 2156 2178 0.97
11 18 8.1e-07 5.5e-05 22.8 2.8 1 23 2184 2206 2184 2206 0.98
12 18 1.1e-05 0.00077 19.2 7.9 1 23 2212 2234 2212 2234 0.98
13 18 2.2e-05 0.0015 18.3 7.0 1 23 2240 2262 2240 2262 0.98
14 18 2.9e-05 0.002 17.9 7.7 1 23 2268 2290 2268 2290 0.98
15 18 6.9e-06 0.00047 19.9 4.9 1 23 2296 2318 2296 2318 0.97
16 18 0.00016 0.011 15.5 0.4 1 23 2328 2350 2328 2350 0.98
17 18 0.045 3 7.9 5.1 1 23 2360 2382 2360 2382 0.98
18 18 6.5e-06 0.00044 19.9 0.9 1 23 2388 2410 2388 2410 0.96

Sequence Information

Coding Sequence
ATGAGTCTGTACTTTGAAAATCCCGTGAATTTTCCGGAATCTGGGACGATTTCGACGAACGAAACTTGGCACCCGAACGCTCCACTTCTTGCGGTCGCCAGTTATTCGCAAGAAAAAGGTGGATTCGTCACCATCTTCGACGACCAGGGCGAACCTTTGCACGATGTTAATTGCCCTTACCATGCAGTCTCCCAAGTCACAGCCTTGTCCTGGCATCCGGATCGCAACATCCTGGCAACAGGATGGGAGAGCGGAGAGATCAGGATCTGGAATGGGATTGACAAAGATTTCTTATTGGTGAATGGTCCGCACACAGCACCAGTGACTTTATTGGAGTTCAGTGAGAAGGGAGGACGATTGGTTAGCTGTGATGctaCAGGTTCAATGGTGGGATGGAAGGTGGATCAGAAAGGACAGGTGATTACAGCTTTCCATCACGATTTAAAAGAAGCCGTCACTCATCTAACATTTCGCTTAACTGTGAAAACTCACTTTGAGTACGATGTTGAGGGTCTCGCGAAGGCGGCGGTTAATGGAGATGAGCACGCTTTGGATCTCTTCAGCAATTGGAGACCGAAGACTACGGCCAGGAAGTTCCGTGTCCAGGATGGTACAGATAATCAATGCTTCTTCGTTGGAACGCAATTAGGTTCGGTGTATTACGTGAACCAATCCGGTGCTTGCACCGAAGTGCTGAACACGGAAGGAACTCCCTTAAGTTACATCTTGTACCAAGAGAATGCCGAGTCTTTGATCATCATGATGGATGGGTTTACCATAGGTCATTTCAAGGTGGATTTCCAAGGGCATCTGACTGAGCTGGTAAAGGTGAAGATGAGCGGTAGGGCGCAAGGTGTTAGAGCAACAGCTAATCAAGGCTTGATTTGGGCTGGAGGAAGTTGTCTAGCTGTACTAACCGGAGAATTAACAGTTCGTATTTGGGACGTGGATTCCAATGATAATTATGTACTTCCCACCTCGCTGAAGAACTACGGCAGCAACGACGAAATTAGCAAGCAGATCAACGAGATGTTCACTTGCATCTCgtattgcaaattaaatcaTACTTTATGTGCAGGCACGAACGCTGGTAGGATTTACTTCTGGGTGCAAAAAGGAAGCAAATTTGAAGGAAAGGAAGCCGAGGAGCTGTGGGAATTGAAGACGATAAGCAGTGTTAGCGGTACTGTTAAGCAGGTGCATTGGGGCTCGATACATCTTAGAAATCCCATCCTGAGCGTCAACTGCGTGACTAGGGTTTACATAATGAAGGAGCAAGGATTGTCGGTGGCGTTCAGCGAGAGGATGTGGGCTACGCAGAAGAACGCTTCTCAAATCCTCCTGGAAACCGGAGAAGATAATCTGGTGTTGAATCTGGATATACAGGTGACGGATTTATCAGTGAATCACGAGTGTTTGGCGGCAACAAACGGGAAAACGATTTGTCTTTATGGAGTGGTTAAGAAGAGCAAGAGTAACCAAGAGGAGAAGGATAAAAAGAAAGTATCGAACCTTACCGCAACGTTAATGAGTAGCTTCTCCTGCGACAACGAAACCATCAAACTGCACGGCAAAGACGTCGTAGTTATGTATATTAGCGGCGTTACAATACGAACTTCAAATGGAGgtgttttatcaaatataccCACAGTTTCCAACGAAGGAGAACCTATAGgAATCGATGTGTGCGGTCATTTCTTAACGATATTTACTATGGAAGGTTTTCTGAAAATCTACGATATCTCCGATAGAGAACCGAAGATGGTGACTAGCATCAGGAATATGTACGACATGTGTCCGGATTTCGGAGAGATCATCCAGGCTAAGTCTAACAGCAACGGCACTAGAATTGCGTTGACCGTAGCCGCAGCGAATTTGATTCCCGATGGTAAATTGTACGTTTGGGACGTCGAGAATGATGCAATGGTCAATTACGATTTCCGGAAGGACGTTACTGCCGAATTAgatgaggaggaagaggatgaTCCAGATTTGACTCGCTCTGGCTTCGATAAAGTCTGCACGGATAGAGTCCCATTGGGCTGTTCATGGGATGTTGATGATCCGAGATTGTTGATTTGCAATGCGAGGAAATTGAAAGTAACGAGAGGACCAGAAAAAAGTAAAAGTTTAGAGAGCGAAGAGCAAGTTATCGTCAGCATGTTCTTTTCTACGGACAAGGGTATATGCATACAAGACGTGAGGGCCGCACATGCTGATGCTAGGTTGCTGGGTGTTGCTACACCGTACATAGCGATTCTGCATAAGTTGAACGTCGATCGATTGGTGATGAACGATTTCGTGGGATTGGAGACTTGCAATGCGGCTACGAAGAATGCAGTATTAGATTTCAGCTATAACTTGAGCATTGgAAATATGGATTCGGCGTTCAAGGCTATAAAGCTGGTACAAAGTAGCGGAGTCTGGAACAGTTTGGCTCGGATGTGCGTGAAGACTAGAAGATTGGATGTGGCTGGAGTGTGTTTAGGACATATGGGTAACGCAAGAGCTGCGAAATTATTAAGACAAGCAATGTCAGATTCCTCTTTACCGCATGAGGCTAAATTGGCGGTTCTTGCAGTGCAATTAGGAATGCTTgAAGAAGCTGAGCAGTTGTATATTCAGTGCGAACGGTACGATCTTCTGAATAAGTTGAATCGCGATAGAAATAAAATGGACGAGGCTATTGCTGTGGCTCAGACCAAAGACAGGATACATCTGAGGCACACCGAACATGTTTGGGCGAAGAACATGGAGTTGGAGGGAAATTTTAAAGAAGCCATTGCTCACTATGAAAAAGCCAACACTCATAGATACGACGTTCCTAGGATGTTGATGGATCAGCAGGAGCAACTACAAGGCTACATGTCCAAGACCACTGATCCgGAATTGCTGAAATGGTGGGGTCAATACATCGAATCGCAAGGAGATATGAACGCTGCTCTGCGGATTTATTCGAACGCCGGTGATATTTACTCGCAGGTTAGAGTTCTCTGTTTTTTGGGCGAAGAGAGTAGAGCCAGCGATTTGGCTCGATCGGGGAACGACAAAGCCGCTTTCTACCACATGGCCAGACATTACGAAACTACGGGAAACATCGAGGATGCTGTCGGCTTCTTTACTAGAGCAAACGCTTACAGTAACGCTGTTagattatgtaaagaaaataacttgGTTGATGAGTTGTGGAATATTGGCTCAGTGGCTGGTAACAGGGAGAAGCTGGAATGCGCCAGGTATTTCGAGGAGACTGAAACTCTGGATAAAGCAGTTATACTGTATCATCGAGCTGgtATGTTACATAAAGCTTTGGATTTGGCGTTCAGAACGCACCAATTCGATACGTTGCAACAGATCGCAACCGAATTGGATGCGGATTCCGATCCAGCGCTGATCAAGAAATGCGCTGAATATTTCGTCACCAATGAACAGTACGATCGGGCCGTTGATCTTTTGGCTGTAGGAAGGAAGTACGTCGAGGCTATAACCGTATGTCTTGAGCATAACGTCCAACTCAACGAGGATCTATCGGAGAAGCTGACGCCAGAGAAAGACGAGATAGAAGACGGTATGCGTATAAAGGTTTTGGAGAATTTGGCTGAAAGTCTGATGGCTCAAGGGAATTACCATCTGGCCACCAAGAAGTTTACGCAAGCCGGTGATAAGATTAGAGCTATGAAAGCTTTGCTGAAATCGGGAGATACGgataaaatcattttctttgCTGGCGTATCGCGCCAACGTGAGATTTACATAATGGCcgcaaattatttacaatcccTAGACTGGCAGAATCAGCCGGAGATTCTGCGCAATATAATAACGTTCTACTCGAAGGGTAAAGCCATGGATTTGTTGGCCAACTTCTACGTGGCTTGCGCGCAAGTCGAAATAGATGAGTTCCAAAACTACGAGAAAGCTTACGGAGCTTTGACGGAGGCGTCCAGGTGTCTGGCGAAGGTTACCCAACCGAGAGATGCAAATCAGCAGCGCAGAGCCACGGAGATCGTGCAACATCAGTTGACGTTCGTCAAACGATTCGTCGATATTAAGAGATTGTTCGAACGTGGTGATCTGCAAACTGGTATGACACAATGTAAGCAGCTGTTGATCTCTGGTGGTAAAGATTTGGAATCGTCGGTGCGTCGCGGCGATATATACGCGCTCATGATACAGATCTGCGTTAAGAACGAGAGTTTCCCAGAGGCCAGACAACTTTTCCTGGAGCTTAAGCAGGTGCTCGCAGCCACCACCAATGTTTCGGTCACGTATTATGTTAACAAGGATATATTGGAAGCTTTGGCTAAAGGACTCGGGATTCCGCTCTCCTCGTTGGTGCCGATCGCGGAGAAAGTCGATGAAGTCGGAAAAGTTGATGAGGATGATGAGGAGGAGATTGTAGAGGAAATGGTTAATGATCTGTACAACTcttgtagtaataataatcatttcaaattCGTTTTCGCCAAGATGAACTCGAACGAACCGGGTGACCACTCGCTGGCCGCCTCGCATCCCCCAACAGATTCCAACGAAGGTAACCAAAGGCCACCATCAACGATCACCACATCGGCTGCCACTGACCTAAGGGTGAACACAACAGCTCTGAATGCGGTTGCTCTGAGTAGTGTCGCCAAGTATTGGGTGCTCACCAACCTGCTGCCTGGACCCGTACCACAAGTTGCTGTCTATGGCCTTCCAGGATCTGCGAAGCCTGAAAACCAACCCAAAGTCTCACAGGAATCGATGATGCCTCAACACGGCGGACTAATACCGCCTGATAACGTGCTACTGCATAATTCGCAAGTACCGCCGGCAAATCTGACGATACCAACGACCATGCACTTGGAATCGCAGCAGAACGGACATCCGCAAATCAACCATCAGCaacaagaaaatcaaaatatggtttcccaacaacaacataatcaaatgcaacaacagcaacagcagcagcagcaacaacaacagcaacaacagcagcagcagcaacaacaacagcaaccgCCGCCTTCGCAGCAACAGAATATGGTTCAAGTGCAAGTGCAAGATAACATGGTTTCTGTAATTGAAGATAGCAAAGACCATAAAGATATAATTGCTTCTCAATTGGTGCAAGCGCAGTTGCTGAATGAGAATACCCAAATGggacagcagcagcaacaacagcaacaaggTTTGACGCCACAGCAGATCCAGCAGATGCAAGTACAGCAGGTTTTGGATAACGTTGTTCGAATGGATACCGGCGAAGGTAATCAAGCGAACGATGAGCACATTGGACCAGATGGCATGCAGATCAAAGATGAGAAGGTCATGCAGAACTGCACGAAACTGTTGGGCGGCCAATTCGGTATGCCcgatattaaaactaatttgatgGACGTCCGGACCGCAGATGGAAGCATCGTCAAGATATCAGCCGGTATTCAAGATCAAGATTTGGCCAAAACGCTTGGAGCTGCTGAGATGGTGCAGAGCATGTACAAAGTGAACGTCGACGACATCAACCAGCTGTTGGCCTACCACGAGGTGTTTGGAAAGTTGCAAGGCGAAATAACGGGAGGCGCTGGGAATCTGGTGCAGAATAATCCGGGCGGTCTTCAGGGTGTGAACAGCATCGCGGTGGTGCCGAAAATGGATAATGATCAAGAAGCATCGACCAGCGGGCTGAGCACCGACAGTCCACCCGCTGTGATTACAGGTAATCATGTGTGTGATTTATGTGGAAAAATGTTCCAGTTTCGTTACCAGTTGATAGTGCACAGACGTTATCACACTGAACGAAAGCCATTTACTTGTCAGGTATGCGGGAAAGCTTTTACGAACTCCACGGAGCTGAGCAGGCACGGAAAATGCCACCTAGGAGGTAGCATGTTCACCTGCAATGTTTGCTTCCACGTGTTTGCGAACGCCGCTTCTTTGGAGCGTCACATGAAGCGACATACCACGGATAAACCATACCCGTGCACGTTATGCGGGAAGTCTTTTGCTCGTAAGGAACACCTCGAGAATCACACCAGGTGTCACACAGGTGAAACACCGTACAGGTGTCAATACTGCGCAAAGACGTTCACGAGGAAGGAGCATATGGTGAACCATGTGAGGAAGCATACGGGTGAGACTCCTCATAGATGCGAAATTTGTAAGAAGTCCTTCACAAGGAAGGAGCACTTCATGAACCACGTGATGTGGCATACAGGTGAGACTCCTCATCAGTGCACCATATGCGCCAAGAAGTACACTAGGAAGGAACATCTTGCAAATCACATGAGATCACATACGAATGATACGCCGTTTAGATGCGAGATTTGCGGGAAATCATTTACAAGGAAAGAGCACTTCACGAATCACATCATGTGGCATACGGGTGAGACGCCCCATCGCTGCGACTTCTGCTCGAAAACGTTTACACGGAAAGAGCATTTGCTGAACCACGTGAGACAGCACACGGGCGAATCGCCTCATCGGTGCGGTTACTGTTCGAAGAGTTTCACGAGGAAGGAGCACCTGATCAACCACGTGCGTCAACATACTGGAGAAACCCCGTTCAGATGCAGCTACTGCCCGAAAGCGTTCACGCGAAAAGATCACCTTGTCAATCACGTCCGTCAGCACACCGGGGAATCGCCTCACAAGTGCACGTATTGCACGAAGAGCTTCACCAGAAAGGAGCATCTCACCAACCACGTCCGGCAGCACACCGGCGAGTCTCCGCATCGCTGCACGTTCTGCTCGAAGAGCTTCACCAGGAAGGAACATCTGACCAACCACGTCAGGATACACACCGGAGAATCTCCACACAGATGCGAATTCTGCCAGAAGACGTTCACGAGGAAGGAGCATCTCACGAACCACTTGCGGCAGCACACCGGCGAAACTCCGCATTGCTGCAACGTGTGCTCGAAACCGTTCACGAGGAAGGAGCAACTCATCAATCACATGAGATCCCACACAGGTAAATTTCTAGGCGAGAGACCGTTCAGTTGCGGCGAGTGCGGTAAATCGTTCCCGCTCAAAGGAAACCTGCTCTTCCATCAAAGGTCGCATAACAAGGGGGCTGCAGCAGAGAGGCCCTTCCGCTGCGATTTATGTGATAAAGACTTTATGTGCAAAGGGCATCTGGTGTCGCACAGGCGTTCACACAGCGGCGAAAGACCGCACGCCTGCCCGGATTGCGGTCGCACCTTTGTCGAAAAAGGCAACATGTTGAGgcATTTGAAGAAGCACGCCGCTGAGAATTTAGCAGCTCAGCACGGGCCTAACGCCGCCAACCATCAACCGCCTACACAGCCGCAGCCGCCGCAGACGAGCGTTGCCAACGTGCAGATACCGCAGGTCACGCAGCCGCCTCCGCTTCCTGTAACGTCGGGGGCGGCGATCGTTCAGCAGACGTTGAGCATGCATCCGCAGAACCCGCACCCCGTCGTGGTGCCAGCAGCTAACGGTAACGTTCTCGCGTCGTATTAA
Protein Sequence
MSLYFENPVNFPESGTISTNETWHPNAPLLAVASYSQEKGGFVTIFDDQGEPLHDVNCPYHAVSQVTALSWHPDRNILATGWESGEIRIWNGIDKDFLLVNGPHTAPVTLLEFSEKGGRLVSCDATGSMVGWKVDQKGQVITAFHHDLKEAVTHLTFRLTVKTHFEYDVEGLAKAAVNGDEHALDLFSNWRPKTTARKFRVQDGTDNQCFFVGTQLGSVYYVNQSGACTEVLNTEGTPLSYILYQENAESLIIMMDGFTIGHFKVDFQGHLTELVKVKMSGRAQGVRATANQGLIWAGGSCLAVLTGELTVRIWDVDSNDNYVLPTSLKNYGSNDEISKQINEMFTCISYCKLNHTLCAGTNAGRIYFWVQKGSKFEGKEAEELWELKTISSVSGTVKQVHWGSIHLRNPILSVNCVTRVYIMKEQGLSVAFSERMWATQKNASQILLETGEDNLVLNLDIQVTDLSVNHECLAATNGKTICLYGVVKKSKSNQEEKDKKKVSNLTATLMSSFSCDNETIKLHGKDVVVMYISGVTIRTSNGGVLSNIPTVSNEGEPIGIDVCGHFLTIFTMEGFLKIYDISDREPKMVTSIRNMYDMCPDFGEIIQAKSNSNGTRIALTVAAANLIPDGKLYVWDVENDAMVNYDFRKDVTAELDEEEEDDPDLTRSGFDKVCTDRVPLGCSWDVDDPRLLICNARKLKVTRGPEKSKSLESEEQVIVSMFFSTDKGICIQDVRAAHADARLLGVATPYIAILHKLNVDRLVMNDFVGLETCNAATKNAVLDFSYNLSIGNMDSAFKAIKLVQSSGVWNSLARMCVKTRRLDVAGVCLGHMGNARAAKLLRQAMSDSSLPHEAKLAVLAVQLGMLEEAEQLYIQCERYDLLNKLNRDRNKMDEAIAVAQTKDRIHLRHTEHVWAKNMELEGNFKEAIAHYEKANTHRYDVPRMLMDQQEQLQGYMSKTTDPELLKWWGQYIESQGDMNAALRIYSNAGDIYSQVRVLCFLGEESRASDLARSGNDKAAFYHMARHYETTGNIEDAVGFFTRANAYSNAVRLCKENNLVDELWNIGSVAGNREKLECARYFEETETLDKAVILYHRAGMLHKALDLAFRTHQFDTLQQIATELDADSDPALIKKCAEYFVTNEQYDRAVDLLAVGRKYVEAITVCLEHNVQLNEDLSEKLTPEKDEIEDGMRIKVLENLAESLMAQGNYHLATKKFTQAGDKIRAMKALLKSGDTDKIIFFAGVSRQREIYIMAANYLQSLDWQNQPEILRNIITFYSKGKAMDLLANFYVACAQVEIDEFQNYEKAYGALTEASRCLAKVTQPRDANQQRRATEIVQHQLTFVKRFVDIKRLFERGDLQTGMTQCKQLLISGGKDLESSVRRGDIYALMIQICVKNESFPEARQLFLELKQVLAATTNVSVTYYVNKDILEALAKGLGIPLSSLVPIAEKVDEVGKVDEDDEEEIVEEMVNDLYNSCSNNNHFKFVFAKMNSNEPGDHSLAASHPPTDSNEGNQRPPSTITTSAATDLRVNTTALNAVALSSVAKYWVLTNLLPGPVPQVAVYGLPGSAKPENQPKVSQESMMPQHGGLIPPDNVLLHNSQVPPANLTIPTTMHLESQQNGHPQINHQQQENQNMVSQQQHNQMQQQQQQQQQQQQQQQQQQQQQQQPPPSQQQNMVQVQVQDNMVSVIEDSKDHKDIIASQLVQAQLLNENTQMGQQQQQQQQGLTPQQIQQMQVQQVLDNVVRMDTGEGNQANDEHIGPDGMQIKDEKVMQNCTKLLGGQFGMPDIKTNLMDVRTADGSIVKISAGIQDQDLAKTLGAAEMVQSMYKVNVDDINQLLAYHEVFGKLQGEITGGAGNLVQNNPGGLQGVNSIAVVPKMDNDQEASTSGLSTDSPPAVITGNHVCDLCGKMFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNSTELSRHGKCHLGGSMFTCNVCFHVFANAASLERHMKRHTTDKPYPCTLCGKSFARKEHLENHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHQCTICAKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGYCSKSFTRKEHLINHVRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCTFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEQLINHMRSHTGKFLGERPFSCGECGKSFPLKGNLLFHQRSHNKGAAAERPFRCDLCDKDFMCKGHLVSHRRSHSGERPHACPDCGRTFVEKGNMLRHLKKHAAENLAAQHGPNAANHQPPTQPQPPQTSVANVQIPQVTQPPPLPVTSGAAIVQQTLSMHPQNPHPVVVPAANGNVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01058565;
90% Identity
iTF_01058565;
80% Identity
-