Ninv011135.1
Basic Information
- Insect
- Nicrophorus investigator
- Gene Symbol
- Ift140
- Assembly
- GCA_963457615.1
- Location
- OY735143.1:2828222-2838882[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00021 0.019 15.6 2.4 1 23 1906 1928 1906 1928 0.97 2 18 0.00013 0.012 16.3 2.5 1 20 1934 1953 1934 1956 0.94 3 18 1.2e-05 0.0011 19.6 1.3 1 23 1962 1984 1962 1984 0.98 4 18 2.8e-05 0.0026 18.4 3.8 1 21 1990 2010 1990 2012 0.95 5 18 6.4e-05 0.0058 17.3 4.6 1 23 2018 2040 2018 2040 0.99 6 18 6.1e-05 0.0055 17.3 5.3 1 23 2046 2068 2046 2068 0.97 7 18 2.1e-05 0.0019 18.8 4.9 1 23 2074 2096 2074 2096 0.98 8 18 2.4e-07 2.2e-05 24.9 2.7 1 23 2102 2124 2102 2124 0.98 9 18 0.00017 0.016 15.9 6.7 1 23 2130 2152 2130 2152 0.97 10 18 2e-05 0.0018 18.9 5.6 1 23 2158 2180 2158 2180 0.97 11 18 1.1e-06 0.0001 22.8 2.8 1 23 2186 2208 2186 2208 0.98 12 18 1.6e-05 0.0014 19.2 7.9 1 23 2214 2236 2214 2236 0.98 13 18 3.1e-05 0.0028 18.3 7.0 1 23 2242 2264 2242 2264 0.98 14 18 4.1e-05 0.0037 17.9 7.7 1 23 2270 2292 2270 2292 0.98 15 18 9.6e-06 0.00087 19.9 4.9 1 23 2298 2320 2298 2320 0.97 16 18 0.00023 0.021 15.5 0.4 1 23 2330 2352 2330 2352 0.98 17 18 0.062 5.6 7.9 5.1 1 23 2362 2384 2362 2384 0.98 18 18 9e-06 0.00082 19.9 0.9 1 23 2390 2412 2390 2412 0.96
Sequence Information
- Coding Sequence
- ATGAGTCTGTACTTTGAAAATCCTGTGAATTTTCCGGAGTCTGGAACGATTTCGACGAACGAAATTTGGCATCCGAACGCTCCTCTTCTCGCTGTCGCCAGTTATTCGCAAGAAAAAGGTGGATTCGTCACCATCTTCGACGACCAGGGAGAACCTTTGCACGATGTTAATTGCCCCTACCATGCAGTGTCTCAGGTCACAGCATTGGCTTGGCATCCTGATCGCAACATCCTGGCAACAGGATGGGAGAGCGGAGAGATGAGGATCTGGAATGGCTTTGATAAAGATTTCTTATTGGTGAATGGTCCGCACACAGCACCAGTGACTTTATTGGAGTTCAGTGAGAAGGGCGGACGATTGGTTAGCTGTGATGCTACAGGTTCAATGGTTGGATGGAAAGTGGATCAGAAGGGGCAGGTGATTACAGCTTTCCATCACGATTTAAAAGAAGCAGTCACCCATCTAACATTTCGCTTAACGGTGAAAACTCATTTCGAATACGATGTTGAGGGTCTCGCGAAGGCAGCGGTTAATGGAGATGAGCACGCTTTAGATCTTTTCAGCAACTGGAGACCTAAGACTACGGCCAGAAAATTCCGCGTCCAGGATGGTACAGATAATCAATGCTTCTTCGTTGGAACGCAATTAGGTTCAGTTTATTACGTGAATCAATCGGGAGCTTGTACCGAAGTACTGAACACCGAAGGAACACCTCTAAGTTACATATTGTATCAAGAGAACGCCGAGTCTTTGATCATCATGATGGATGGCTTCACCATAGGTCATTTCAAGGTGGATTTCCAAGGTCATCTAACTGAACTGGTTAAGGTGAAGATGAGCGGTAGGGCGCAAGGTGTTCGAGCAACAGCTAATCAAGGCTTGATTTGGGCTGGAGGAAGTTGCTTAGCTGTGCTAACCGGAGAACTAACAGTCCGTATTTGGGATGTGGATTCCAATGATAACTACGTACTTCCCACCGCCTTAAAGAACTACGGTGGCAACGACGAAATTAGCAAGCAGATCAACGAGATGTTCACGTGCATCTCGTATTGCAAGTTGAATCATACTTTATGCGCGGGCACGAACGCCGGTAGGATTTACTTTTGGGTGCAAAAGGGGAGCAAGTTCGAGGGAAAGGAAGCTGAAGAATTGTGGGAGTTGAAGACGATAAGCAGTGTGAGCGGTACTGTTAAGCAGGTGCATTGGGGCTCTATACATCTTAGAAATCCCATTCTGAGCGTCAACTGCGTGACTAGGGTTTACATAATGAAGGAGCAAGGATTATCGGTTGCGTTCAGCGAGAGGATGTGGGCTACGCAGAAGAACGCGTCTCAAATCCTTCTGGAAACCGGTGAAGATAATCTAGTGTTGAATCTAGATATACAGGTGACGGATTTGTCCGTGAATCACGAGTGTTTAGCGGCAACAAACGGGAAAACGGTTTGTCTTTACGGAGTGGTCAAGAAAAGCAAGAGTAACCAAGAGGAGAAAGATAAAAAGAAAGTATCGAATCTTACAGCCACGTTAATGAGTAGCTTCTCTTGCGACAACGAAACAATCAAACTACATGGCAAAGATGTTGTAGTTATGTTCATTAGCGGCGTTACAATAAGGACTTCAAATGGAGGAGTTTTATCCAACATCCCTACAGTCTCCAACGAAGGAGAACCTATAGgaatcGACGTGTGTGGTCATTTCCTAACTATATTTACCATGGAAGGTTTTTTGAAAATCTACGATATCTCCGATAGAGATCCGAAGATGGTGACCAGCGTTAGGAATATGTACGACATGTGCCCGGATTTCGGGGAAATCATTCAAGCTAAGTCTAACAGCAATGGCTCAAGAATCGCATTGACTGTAGCCGCAGCGAATTTGATTCCCGATGGTAAATTATACGTTTGGGATGTCGAGAATGATGCAATGGTTAATTACGATTTCCGGAAGGACGTGACTGCTAATTTagaagaggaggaagaggatgaTCCGGACTTGACTCGCTCTGGCTTCGATAAAGTCTGCACGGATAGAGTCCCATTGAGCTGTTTCTGGGATGTTGATGATCCTAGGTTGTTGATTTGTAATGCGAGGAAATTGAAAGTAACGAGAAGTACTGAAAaaagtAAGAGTTTGGAGAGCGAAGAGCAAGTTATTGTCAGCATGTTCTTTTCTACTGATAAGGGTATATGCATACAAGACGTGAGGGCTGCATTCGCTGATGCTAGATTGCTAGGTGTAGCTACACCGTATATTGCGATTCTGCACAAGTTGAATGTTGAACGTTTGGTGATGAACGATTTCGTAGGTTTGGAGACTTGCAATGCGGCTACGAAGAATGCGGTATTGGATTTCAGCTATAATTTAAGCATCgGAAATATGGATTCGGCGTTTAAAGCTATAAAGCTGGTACAGAGTAGCGGAGTCTGGAACAGCTTAGCTAGAATGTGCGTGAAGACTAGAAGATTGGATGTGGCTGGAGTGTGTTTGGGACATATGGGCAACGCAAGAGCGGCGAAATTATTGAGACAAGCTATGACAGATTCGTCGTTACCGCAGGAAGCCAAATTAGCTGTGCTCGCAGTGCAATTGGGAATGCTTGAAGAAGCTGAGCAGTTGTATATGCAGTGCGAACGGTATGATCTGCTGAATAAGTTGAATCGCGACAGGAATAAAATGGATGAGGCTATTGCTGTGGCTCAAACCAAAGATAGGATACATTTGAGGCACACCGAACATGCTTGGGCAAAGAACATGGAGTTGGAGGGGAATTTTAAAGAAGCTATTGCTCATTACGAGAAAGCCAACACTCACAGATACGACGTTCCTAGGATGCTGATGGATCAGCAGGAGCAACTACAAGCCTACATGTCGAAGACAACCGATCCGGAATTGTTGAAATGGTGGGGTCAATACATAGAATCGCAAGGAGATATGAACGCTGCTCTGAGGATTTATTCGAATGCCGGTGATATTTACTCGCAGGTGAGGGTTCTCTGTTTTTTGGGTGAAGAAAGCAGAGCTAGTGATTTAGCACGATCGGGGAATGACAAAGCCGCGTTTTACCACATGGCCAGACATTACGAAACTACGGGAAACATCGATGATGCTGTTGGTTTCTTTACAAGAGCTAACGCTTATAgtaATGCTGTTAGATTGTGCAAAGAAAATAACTTAGTTGATGAATTGTGGAATATTGGCTCAGTGGCTGGTAACAGGGAGAAGCTGGAATGCGCCAGGTATTTCGAGGAGACTGGTACTTTGGATAAAGCAGTTATATTATATCATCGAGctggtaTGCTGCATAAAGCTTTGGATTTGGCGTTCAGAACTCATCAATTCGATACTTTGCAACAGATTGCAACCGAATTAGATGCAGATTCTGATCCAGCTTTGATCAAGAAATGCGCTGAATATTTCGTCACCAATGAACAGTACGATCGAGCCGTTGATCTTTTAGCTGTTGGAAGAAAGTACGTTGAGGCTATAACCGTATGTCTTGAGCATAACGTCCAACTGAACGAGGATCTATCAGAGAAATTGACGCCAGAGAAGGATGAGATTGATGATGGTATGCGAATAAAAGTTTTGGAGAATTTGGCTGAAAGTCTGATGGCTCAAGGGAATTACCATCTGGCCACCAAAAAGTTTACGCAAGCCGGTGATAAGATTCGAGCTATGAAAGCTTTACTAAAGTCGGGGGATACGgataaaatcattttctttgcCGGCGTTTCGCGCCAACGCGAGATTTACATAATGGccgcaaattatttacaatcgcTCGACTGGCAGAATCAGCCGGagattttacgtaatattataaCGTTCTACTCGAAAGGAAAAGCCATGGATTTATTAGCCAACTTTTACGTGGCTTGCGCGCAAGTCGAAATAGATGAGTTCCAGAATTACGAGAAAGCGTATGGAGCTTTGACGGAGGCGTCCAGGTGTTTAGCGAAAGTCACCCAACCGAGAGATGCAAATCAGCAGCGCAGAGCCACGGAGATCGTGCAACATCAGTTGACGTTCATCAAGCGATTCGTTGATATTAAGAGACTATTCGAACGTGGTGATCTGCAAACTGGTATGACGCAATGTAAGCAGTTGCTGATATCTGGTGGTAAAGATTTGGAGTCTTCAGTGCGTCGCGGCGATATTTACGCGCTCATGATACAAATCTGCGTTAAGAACGAGAGTTTCCCAGAGGCCAGGCAATTATTCCTGGAGCTTAAGCAAGTGCTTGCAGCCACCACCAATGTTTCAGTTACGTATTATGTTAATAAGGATATATTGGAAGCTTTGGCTAAAGGACTCGGGATTCCATTGAGCTCCTTGGTGCCGGTTGCTGAGAAAGTTGATGAAGTCGGAAAAGTCGACGAGGATGATGAGGAGGAGATTGTAGAGGAAATGCAATACTCTCTGTACAACTcttgtagtaataataatcatttcaaattCGTTTTCGCCAAGATGAACTCGAACGAACCGGGTGACCACTCGCTGGCCGCCTCGCATCCCCCAACAGATTCCAACGAAGGTAACCAAAGGCCCCCATCAACGATCACTACCTCGGCAGCCACTGACCTAAGAGTGAACACCACGGCTCTGAATGCGGTTGCTCTGAGTAGTGTCGCCAAGTATTGGGTTCTCACCAACCTGCTGCCTGGACCAGTACCACAAGTTGCTGTCTATGGACTGCCTGGATCCACGAAGCCTGAGAATCAACCCAAAGTCTCGCAGGAGTCGATGATGCCTCAACACGGCGGACTAATACCGCCTGATAACGTGCTATTGCATAATTCGCAAGTACCGCCGGCAAATCTGACGATACCAACGACCATGCATTTGGAATCGCAGCAGAACGGTCATCCGCAGATCAATAACCATCAGCaacaagaaaatcaaaatatggtttcacaacaacaacaacacaatcaaatgcaacaacaacagcagcagcaacagcagcaacaacaacaacaacagcagcagcagcagcaacaaccgCCGCCTCCGCAAAATATGGTTCAAGTGCAAGTGCAAGATAACATGGTTTCTGTAATTGAAGATAGCAAAGACCATAAAGATATAATTGCTTCTCAATTGGTGCAAGCGCAATTGCTGAATGAGAATACTCAAATGGcacagcaacagcagcaacaacaacagcagcagcagcaaggaTTAACGCCTCAGCAGATTCAGCAGATGCAAGTGCAGCAGGTTTTGGATAACGTTGTTCGAATGGATACCGGCGAAGGAAATCAGACGAACGACGAGCACATTGGACCAGATGGCATGCAGATCAAAGATGAAAAGGTCATGCAGAACTGCACGAAGCTGCTGGGTAGCCAATTCGGTATGCCcgatattaaaactaatttgatGGACGTCCGGACCGCAGATGGAAGCATCGTCAAAATATCAGCCGgTATTCAAGATCAAGATTTGGCCAAGACGCTTGGAGCTGCTGAGTTGGTGCAGAGCATGTATAAAGTGAACGTCGATGACATCAACCAGCTGTTGGCCTACCACGAGGTGTTTGGAAAGTTGCAAGGCGATGTAACGGGAGGCGCTGGGAATCTCGTGCAGAATAATCCGGGCGGTCTTCAGGGTGTGAACAGTATCGCGGTGGTGCCGAAAATGGATAATGATCAAGAAGCATCGACGAGCGGGCTGAGCACCGATAGTCCACCCGCTGTGATTACAGGTAATCATGTGTGTGATTTATGTGGGAAAATGTTCCAATTTCGTTACCAGTTGATCGTGCACAGACGTTATCACACTGAACGAAAGCCATTTACTTGTCAGGTATGCGGGAAAGCTTTCACAAACTCCACGGAGCTGAGCAGGCACGGGAAATGCCACCTAGGAGGTAGCATGTTCACTTGCAATGTGTGTTTCCACGTGTTTGCGAATGCGGCTTCGTTGGAGCGTCACATGAAGCGACATACCACGGATAAACCGTATCCGTGCACGTTATGTGGGAAATCTTTTGCTCGTAAGGAACACCTTGAGAATCACACCAGGTGTCACACCGGTGAAACGCCGTACAGGTGCCAGTACTGCGCGAAGACGTTTACGAGGAAGGAGCATATGGTGAACCATGTGAGGAAGCATACGGGTGAGACTCCTCATAGATGCGAAATTTGCAAGAAATCTTTCACAAGGAAGGAGCACTTCATGAACCATGTGATGTGGCATACAGGTGAGACGCCTCATCAGTGCACCATATGCGCCAAGAAGTACACTAGGAAGGAGCATCTTGCAAATCACATGAGATCACATACGAATGATACACCGTTTAGATGTGAGATTTGCGGGAAATCATTTACAAGGAAAGAGCATTTCACGAATCACATTATGTGGCATACGGGTGAGACGCCCCACCGCTGCGACTTCTGCTCGAAAACGTTTACACGGAAAGAGCATTTGCTGAACCACGTGAGGCAGCACACGGGGGAATCCCCTCATCGGTGCGGTTACTGTTCGAAGAGTTTCACGAGGAAGGAGCATCTGATCAATCACGTGCGTCAGCACACCGGAGAGACCCCGTTTAGGTGCAGCTACTGCCCGAAAGCGTTCACGCGAAAAGATCACCTTGTCAATCACGTCCGTCAGCACACCGGGGAATCGCCCCACAAGTGCACGTATTGCACGAAGAGCTTCACCAGGAAGGAGCATCTCACCAACCACGTCCGGCAGCATACCGGCGAGTCGCCGCATCGCTGCACGTTCTGCTCGAAGAGCTTCACCAGGAAGGAGCATCTGACCAACCACGTCAGGATACATACCGGCGAATCTCCTCACAGATGCGAATTCTGCCAGAAGACGTTCACGAGGAAGGAGCATCTCACGAACCACTTGCGGCAGCACACGGGCGAAACTCCGCATTGCTGTAACGTGTGCTCGAAGCCCTTCACGAGGAAAGAGCAGCTCATCAATCACATGAGATCCCACACAGGTAAATTTCTAGGAGAGAGACCGTTCAGTTGCGGCGAGTGCGGAAAGTCGTTCCCACTCAAAGGAAACCTGCTCTTCCATCAAAGGTCGCATAATAAGGGCGCCGCAGCAGAGAGGCCTTTCCGCTGCGATTTATGTGATAAAGACTTTATGTGCAAAGGGCATTTGGTGTCGCACAGGCGTTCACACAGCGGCGAAAGACCGCACGCCTGCCCCGATTGCGGCCGCACCTTTGTTGAAAAAGGCAATATGTTGAGGCATTTGAAGAAGCACGCGGCTGAGAATTTAGCGGCTCAGCACGGGCCGAACGCAGCCAACCATCAACCGCCtccaccaccgccgccgcaGACGAGCGTAGCCAATGTGCAAATACCGCAGGTCACGCAGCCGCCTCCGCTTCCGGTAACGTCGGGGGCGGCGATCGTTCAGCAGACGTTGAACATGCATCCGCAGAACCCGCACCCCGTCGTGGTGCCAGCAGCTAACGGTAACGTTCTCGCGTCTTATTAG
- Protein Sequence
- MSLYFENPVNFPESGTISTNEIWHPNAPLLAVASYSQEKGGFVTIFDDQGEPLHDVNCPYHAVSQVTALAWHPDRNILATGWESGEMRIWNGFDKDFLLVNGPHTAPVTLLEFSEKGGRLVSCDATGSMVGWKVDQKGQVITAFHHDLKEAVTHLTFRLTVKTHFEYDVEGLAKAAVNGDEHALDLFSNWRPKTTARKFRVQDGTDNQCFFVGTQLGSVYYVNQSGACTEVLNTEGTPLSYILYQENAESLIIMMDGFTIGHFKVDFQGHLTELVKVKMSGRAQGVRATANQGLIWAGGSCLAVLTGELTVRIWDVDSNDNYVLPTALKNYGGNDEISKQINEMFTCISYCKLNHTLCAGTNAGRIYFWVQKGSKFEGKEAEELWELKTISSVSGTVKQVHWGSIHLRNPILSVNCVTRVYIMKEQGLSVAFSERMWATQKNASQILLETGEDNLVLNLDIQVTDLSVNHECLAATNGKTVCLYGVVKKSKSNQEEKDKKKVSNLTATLMSSFSCDNETIKLHGKDVVVMFISGVTIRTSNGGVLSNIPTVSNEGEPIGIDVCGHFLTIFTMEGFLKIYDISDRDPKMVTSVRNMYDMCPDFGEIIQAKSNSNGSRIALTVAAANLIPDGKLYVWDVENDAMVNYDFRKDVTANLEEEEEDDPDLTRSGFDKVCTDRVPLSCFWDVDDPRLLICNARKLKVTRSTEKSKSLESEEQVIVSMFFSTDKGICIQDVRAAFADARLLGVATPYIAILHKLNVERLVMNDFVGLETCNAATKNAVLDFSYNLSIGNMDSAFKAIKLVQSSGVWNSLARMCVKTRRLDVAGVCLGHMGNARAAKLLRQAMTDSSLPQEAKLAVLAVQLGMLEEAEQLYMQCERYDLLNKLNRDRNKMDEAIAVAQTKDRIHLRHTEHAWAKNMELEGNFKEAIAHYEKANTHRYDVPRMLMDQQEQLQAYMSKTTDPELLKWWGQYIESQGDMNAALRIYSNAGDIYSQVRVLCFLGEESRASDLARSGNDKAAFYHMARHYETTGNIDDAVGFFTRANAYSNAVRLCKENNLVDELWNIGSVAGNREKLECARYFEETGTLDKAVILYHRAGMLHKALDLAFRTHQFDTLQQIATELDADSDPALIKKCAEYFVTNEQYDRAVDLLAVGRKYVEAITVCLEHNVQLNEDLSEKLTPEKDEIDDGMRIKVLENLAESLMAQGNYHLATKKFTQAGDKIRAMKALLKSGDTDKIIFFAGVSRQREIYIMAANYLQSLDWQNQPEILRNIITFYSKGKAMDLLANFYVACAQVEIDEFQNYEKAYGALTEASRCLAKVTQPRDANQQRRATEIVQHQLTFIKRFVDIKRLFERGDLQTGMTQCKQLLISGGKDLESSVRRGDIYALMIQICVKNESFPEARQLFLELKQVLAATTNVSVTYYVNKDILEALAKGLGIPLSSLVPVAEKVDEVGKVDEDDEEEIVEEMQYSLYNSCSNNNHFKFVFAKMNSNEPGDHSLAASHPPTDSNEGNQRPPSTITTSAATDLRVNTTALNAVALSSVAKYWVLTNLLPGPVPQVAVYGLPGSTKPENQPKVSQESMMPQHGGLIPPDNVLLHNSQVPPANLTIPTTMHLESQQNGHPQINNHQQQENQNMVSQQQQHNQMQQQQQQQQQQQQQQQQQQQQQPPPPQNMVQVQVQDNMVSVIEDSKDHKDIIASQLVQAQLLNENTQMAQQQQQQQQQQQQGLTPQQIQQMQVQQVLDNVVRMDTGEGNQTNDEHIGPDGMQIKDEKVMQNCTKLLGSQFGMPDIKTNLMDVRTADGSIVKISAGIQDQDLAKTLGAAELVQSMYKVNVDDINQLLAYHEVFGKLQGDVTGGAGNLVQNNPGGLQGVNSIAVVPKMDNDQEASTSGLSTDSPPAVITGNHVCDLCGKMFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNSTELSRHGKCHLGGSMFTCNVCFHVFANAASLERHMKRHTTDKPYPCTLCGKSFARKEHLENHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHQCTICAKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGYCSKSFTRKEHLINHVRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCTFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEQLINHMRSHTGKFLGERPFSCGECGKSFPLKGNLLFHQRSHNKGAAAERPFRCDLCDKDFMCKGHLVSHRRSHSGERPHACPDCGRTFVEKGNMLRHLKKHAAENLAAQHGPNAANHQPPPPPPPQTSVANVQIPQVTQPPPLPVTSGAAIVQQTLNMHPQNPHPVVVPAANGNVLASY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01059252;
- 90% Identity
- iTF_01059252;
- 80% Identity
- -