Nves008932.1
Basic Information
- Insect
- Nicrophorus vespilloides
- Gene Symbol
- retn
- Assembly
- GCA_001412225.1
- Location
- NW:56352-105677[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-26 3.1e-23 81.4 0.0 2 89 155 240 154 240 0.96 2 2 5.8 9.5e+03 -3.5 0.0 26 38 375 387 346 388 0.66
Sequence Information
- Coding Sequence
- ATGGAAATGGAACCACAGGAACGGGACAGCGACATCGGCGATGACAGTCCAGTGTCTCATCACGACGAGGAACTGAGCGAAGTAGAATCCAGTGGAAATCAGGAAGATGTGGACAGCTGCGACGAGATGCGTCGACACAACAGCATGTTGGCTGATCATGGGGATGTTCTCGCAAAGCTTAAGATGCAGGTCCGGGACATCAAGGTAGGGGAGGATTTCGAGAACCGTCACATGCCGTTCCCGATGACCAACAGACCGAACGAGGGCTTCCAGTTGCCGGTGCCGTTCCCGTTTCCACATCCGGCGGCTGCTTTTCTTCCTCCGATGGCACCTCAACAGCAGCCTCCGTCCTCCGGGAGTTCACATTCATCAGAGGGAAGCGCTTCTTCCCAACACACCTGGTCATTCGAAGAACAATTCAAACAGGTGCGTCAGCTGTACGAGATCAATGACGACCCAAAACGCAAGGAGTTTCTCGATGACCTATTCTCTTTCATGCAGAAAAGAGGAACTCCGATCAACAGACTACCAATAATGGCGAAATCTGTTTTGGATTTATTCGAATTATACAATTTGGTAATTGCTAGAGGCGGATTGGTGGACGTCATCAACAAGAAGCTGTGGCAGGAGATTATCAAAGGACTGCATTTACCGTCGTCGATCACATCCGCAGCTTTCACATTGCGTACACAATATATGAAGTATTTGTATCCTTATGAATGCGATAAGCGTCGCCTGAGCACACCGCAAGAGCTACAGGCCGCCATAGATGGAAATCGTAGGGAAGGCAGAAGGAGTAGCTATGGTCAATACGAGTCAGTCCATCAACGCTCTCCGAATCCAGCGCAAATGTCGCCGTTAACCCTGGTttcgcaacaacaacaaattgcTGCAAGAATGAATTCCGTGATGGGTGGGGGAATCGGTTTACATAATGGTGCTCATCATCCTAGCCATCCGACGCCTATGGGTCAACCCATGACCAGTGGCCCAATACCAGGATTGGCCCCCAGTGAATTCGAGACTCGAATGTTGGAGTATGTTAAGTTgttaaacaaagaaataaggAACGCTGGATCAACCCCACCAAACCACGGCGACTCATCCCCACGAAACGACAACTTGGAGATGTCTCGTATCACCTTATGGAATTTGTACAACAACAATCAACCACCAGTCGAGCCTCAGAAGGAAGCACTTAATCTATCAGACAGTTCCCCGCCAATGGTAAAACGAGAGCAGCCCGATCACAGAGATTCACCTCCGCTACCCAAGAAGTTCATGAAGGAAGAAGAACCCCCCAAGTCGCTAACCAACAGCAGCACGCACATCAAAATTAACAGTCGAGGTGATTCTCGCAACGGTGATAATTCATTAGTGGTTAGTATGGAGTTGAACGGTGTCACATATCAGGGTGTTCTCTTCGCGCAGACCGGCAAGACGGCGATAACGTCGTAA
- Protein Sequence
- MEMEPQERDSDIGDDSPVSHHDEELSEVESSGNQEDVDSCDEMRRHNSMLADHGDVLAKLKMQVRDIKVGEDFENRHMPFPMTNRPNEGFQLPVPFPFPHPAAAFLPPMAPQQQPPSSGSSHSSEGSASSQHTWSFEEQFKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLFELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECDKRRLSTPQELQAAIDGNRREGRRSSYGQYESVHQRSPNPAQMSPLTLVSQQQQIAARMNSVMGGGIGLHNGAHHPSHPTPMGQPMTSGPIPGLAPSEFETRMLEYVKLLNKEIRNAGSTPPNHGDSSPRNDNLEMSRITLWNLYNNNQPPVEPQKEALNLSDSSPPMVKREQPDHRDSPPLPKKFMKEEEPPKSLTNSSTHIKINSRGDSRNGDNSLVVSMELNGVTYQGVLFAQTGKTAITS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00755230;
- 90% Identity
- -
- 80% Identity
- -