Ninv007977.1
Basic Information
- Insect
- Nicrophorus investigator
- Gene Symbol
- -
- Assembly
- GCA_963457615.1
- Location
- OY735142.1:1926086-1928060[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0016 34 4.9 0.0 26 46 22 42 9 46 0.90 2 7 0.036 7.8e+02 0.6 0.1 22 48 129 155 124 159 0.86 3 7 0.16 3.5e+03 -1.5 0.0 21 31 272 282 266 295 0.77 4 7 0.0029 63 4.1 0.0 21 46 353 378 349 382 0.81 5 7 0.0031 67 4.0 0.0 21 46 439 464 433 470 0.86 6 7 8.8e-05 1.9 8.9 0.1 26 44 475 493 469 498 0.88 7 7 0.0076 1.6e+02 2.7 0.0 22 48 499 525 494 526 0.92
Sequence Information
- Coding Sequence
- atgcAATTTGTTTGGAAAATAACCACtgaaGAGGAGAGATTGGTGGAGGGTGGCGGCAGACCGACGTGCGACGTCTGCAATAAGGGATGCAAGAACCAGAGGACGCTCAGGGAGCACATGAAAATCCACAACAACACATACAACTGCGAGCAGTGCGATCGAATGTTCAAAAAAGTGCTGGACTACATCCTGCACATGACCTCGCACTCCGCGGACGGGAAGTTCCAGTGCGTCAACTGCGATTACGCGACAGGGGAGATGATGGATATAACGAAGCATCTGCTCGCACGTCATGAGAAAACTTGGAAATACACGTGCGGCATCTGCAAAAAGGGATTCAACATATTCAGCTGGTTTAAGGAGCACCAGAACTTTCATAACGGGCAAAAACCGTTCGCGTGTTCGTACTGCGAGAAGACGTTCATGTATTCGAGGCATTTGGCCGCCCACAAGCACATAGTGCACAAGGATCGAGCCGATGGAGACGTACATGAGTGTCTTCTGTGCAAGAAGCAGTACCAGCACAGGAACAGTTTGAAACTGCACATGAATAACACGCACGCCGGGAACGTGTCCGTCTGCGAGGTGTGCGGAAAGCAGCTTTCCAGCAAGGAGAAATTAAAGTTCCACATGAGGATACACACCGGTTACAAACCATTCAAATGCTCGTACTGTGAAAAGGCTTTCGTGAAGAAGCCGTTACTCATCGAACACGAAAGGATCCACACGGGCGTCAAACCCTACAGATGTACCTACTGCGAGAAATGCTTCTCGCAAAGAACAAGCTTAGTCATCCACATGCGAAATCACACCGGAGAGAAACCCTACAAATGCCTCATCTGCGCAAAGGGTTTCGTATCTAGGGCCATCATGAATTTGCACTTGAAATCATGTAAAGTTCCTTCCTTACAACTTAAAAATCAGGTATCCATCGACAAAGAGGAACAAGTTATTATTGTCAGCAATACGGAGCTGAGGTACGCTTGCTCGGATTGCGACCAGAACTTCGAGGGAATTGTGGATTTCTCGTTGCACGTGCAAAACCATCTCGCCAATTCTTCCAAATCGTTCACGTGTCCCTTCTGCGAATTCACGACCATCTTCAAGCGATCATTCAGGAATCACGTGCGTCTGCACGCCGAGGAAGAGTTCCGTTACGAGTGCGAGATCTGCAGTAAGAAGTTTATTAACAAACTCCCGTACGAGGAGCACATGACGCTCCATCAAGGCTTGGACATTTATCAATGCGATTACTGCCCGAAGCGATTCGTCCTGGAGAGGTACTTGGCCATCCACAAGAAGCTCAATCACGAGCAAGAGAAGGACGCCGAGTGCGAGGTATGCGGCAGGGCATTCAAATTTTCCAACAGTTTGGTGCGTCACATGCGTAGCATCCACAAGATTGGAACGGACACGACAAAGGAGTGTCCTGTCTGCTACAAGATTCTATCTAATCCCTACAACCTCAAGATGCATATGCTAGTGCACACAGGAGAGACGCCATTCATTTGCGACGTCTGTGGCAAGGGTTTCACCAAAAACTACAAACTTAAGCAGCACCTCAATGTTCACcacaagtaa
- Protein Sequence
- MQFVWKITTEEERLVEGGGRPTCDVCNKGCKNQRTLREHMKIHNNTYNCEQCDRMFKKVLDYILHMTSHSADGKFQCVNCDYATGEMMDITKHLLARHEKTWKYTCGICKKGFNIFSWFKEHQNFHNGQKPFACSYCEKTFMYSRHLAAHKHIVHKDRADGDVHECLLCKKQYQHRNSLKLHMNNTHAGNVSVCEVCGKQLSSKEKLKFHMRIHTGYKPFKCSYCEKAFVKKPLLIEHERIHTGVKPYRCTYCEKCFSQRTSLVIHMRNHTGEKPYKCLICAKGFVSRAIMNLHLKSCKVPSLQLKNQVSIDKEEQVIIVSNTELRYACSDCDQNFEGIVDFSLHVQNHLANSSKSFTCPFCEFTTIFKRSFRNHVRLHAEEEFRYECEICSKKFINKLPYEEHMTLHQGLDIYQCDYCPKRFVLERYLAIHKKLNHEQEKDAECEVCGRAFKFSNSLVRHMRSIHKIGTDTTKECPVCYKILSNPYNLKMHMLVHTGETPFICDVCGKGFTKNYKLKQHLNVHHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01059259;
- 90% Identity
- iTF_01059259;
- 80% Identity
- iTF_01058576;