Ninv006446.1
Basic Information
- Insect
- Nicrophorus investigator
- Gene Symbol
- egg
- Assembly
- GCA_963457615.1
- Location
- OY735141.1:19390916-19394994[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.2 6.7e+03 -3.0 0.1 32 41 581 590 579 591 0.82 2 3 4.5e-12 1.4e-08 34.5 0.0 7 75 623 685 619 687 0.89 3 3 3.2 9.9e+03 -3.5 0.0 15 33 944 961 938 961 0.82
Sequence Information
- Coding Sequence
- ATGTCGAAAGAAGTGATTAGCAGTAGTCTAGATAATGCTGCAAGTTCATCGGTTGTTATTGTTTTGGATGATGACGAGCAGCCcgCTGTGATTGATCTTGTTGGTCAAGCACCAGCAGGTGATCGAAAATGCATCAATTACTCGTGTCAAAGTGGGATCAATCTCATCAATCCACCCAACTTCTGTTTGTCTTACTACAGAGTTAAAAATGGTTCAAGCAAGAAGCAAATGATTTGCATGGAATGCTTTCATTTAGCAGTGCAAACCTTCGATGTACTCTGTCAATCACTTACTGATGATAATGGTGACATTATGGAAGTGGACATTCCTGTAAGGGATGTGACTGTTGCAATTGATGATTCTGATAGTGATGGTGAGGAAAAGGAGGCTGATGTTATGATAGATGATGATACCATGAAAATGCTTGAAGAGAATTTTGATGATGTCCTGAGCAATACATTGGAAATGGttaaatatgaacaaaaagTGGAAAAGGCTGTTGGTACATTGAAGAAAAAGTATGAAGCCAACAATGaatcttATACGGAACTGAAAACTATGATTGATAGTATCAGAAAAGAAGTTGATTCAATGCTCTTTGGATTATATAAGACAATGAAACCCACCAATGAGATTTTGCCTGAATTGATAATTGAAGATAGACCTCTAAgggtttatgaaaatatttcaaaaagatCTGATGGGTGTCAAACTGAGACCAGAATTCAAACTAGAAATAAAACTATGGCTGCAATTGCTGACATGAAAACTGAGGTAATAGAACCTATGGAACCACCTGCTGATTTACCTATCAGAACTATTCTTGAAAAACCACCATTGATAACAGGTAATCAATATTACGTGAAGAAAAACTCGAATCTGTCGTCTTGGGTTAAAGTGACTTTGGATAAAATACTTGGGCCGAACAACGGATCGCAAGTTTTTCAAGTGGTTCGCGAAACTAGCGGATCTGGTATTGCGCAGAGACGAACTGTGAACGGAAAAGAGATTGCATACTCCGAGAAGTCCAACGTGATGTTGGACGTGGGGAAAAGGGTGATTGCTCTTTTCAAGGAGTTCGGAGATTTGAAATCATCGAAAAGGGATGCATACTACCCGGGGGTGGTTGGAGAGTTTCCAACGCAGCATAACAGATACCGTTACCTTGTATTCTTTGACGATGGTTACGCGCATTACGTGCATTACAACAACGTGTTTCTCGTTTATCATCAAAACGACAACGTCTGGGAGGACGTCAATACCGATTCGATGGCTTTCATCCGGAAGTACGTAACCGAATATCCCAATAGGTCGATGGTCAAATTGCAAAAGAACCAAGTGTTCCGCACAGAATTCAGATCCAGATGGTACATGACCACCGTTTTAAATATAGACTGTTCGCTGGCCCAAATATACTTCGAATCGCTGAAGAGGGTGGAATGGATATACCGAGGTTCGAGGCGTTTCAACATAATGTACAAAGAGTTGCAAGCGACCGATAGCAGATTGCAAAACAGACAGCGTCATCATAGATCTGCTTACATTCAAGCTACTTCAGGAAAAACACCTTACGTGCAGTACACCAGGGACGATGATGTTATTTGCGTGGATGATACCGCGAAAACGGAAATTAGGTCCGTGGCGAAAAAAAGCACACGTCCACCATCTACAATTAGCCCTAAACCATTGATTCCTGAAGCTAAGGATAATACTATTAAACCAGAAAATCGTCCACCTGGAAAGATCGTATATTACACGCCAAAAAGACAAAATCCGTTGATGAAAGTTTACAAGTTGCATGATTGTAATGAGTCGTGTCAACAGGAGATGATTACATCGCTGAGCCGCCTGAGAGGTTACGGACCACTGGCAAAACCGTTACTCTGCGGATTTTACCGATTGCATAAGAAAATTAAGGGTAAGAAACCGTGTGTGGTTTACAAGACACCCTGCGGTCGAACCGTTAGAAATATGCCAGAATTGCATGATTACTTGCAAGAGATAAAATCAGATCTGACTGTCGATCTGTTCTCCTTCGACTATTATGTCCGCTGCTTGGCAGAGTTTATTTTAGAACCTAATTCGCCGGTTATTAAGGATCTTTCGACTGGTTTCGAGGAAATACCAATTCCGGTAGTGAACTACGTCGACAATGAATTAAACAACTTCGTCAATTATTCGACGAAGCGAATGCCTATGGAAGGCGTCAATCTAAACTTGGATCCGGAATTCTTGGTTGGATGCGATTGTGAAGACGATTGTTCGGATAAAAGTAAATGCAGTTGCTGGCAATTTACTTTACAGGgaactaaatatttgaacaaaacAAAGACCGCGATTGGATACAATTACAGGCGACTGAACGAACCTGTTTTTACCGGTATTTACGAATGCAATTCGATGTGCAAATGTTCAAAGACTTGTTTGAATCGAGTCGTTCAAAATCCTCTTCAGCACAAACTGCAGGTCTTCAAGACTGTCAATCGCGGCTGGGGCATCCGGTGCATCAACGACATTCCTCAAGGCTCATTCATCTGTATCTATGCAGGAGCTTTGCTCACCGAGCAAATGGCAAACGAGGGTGGCAAGAATTACGGCGACGAGTATTTAGCTGAGCTTGATTACATCGAGTCTGTGGAAGGCTTCAAAGAAGATTATGAACACGAGGCGTACACTAGCGACAAGGACTCCGAGGATGAAGAAGGTTCAAGGAATGAAACGGCCAAACAGCGTAACCATGACGAAGATTTCAGACCAACGATGGAAGATAGCGATGATTCCCTCGAATCGTTAAATTTATGGACACGGTTGAGAAGGGCAGCCGCGCAATATAAAACCGATTCAGCTTCAAAGAAAGTGGGATCCACATCCAAAATGGACGTAGACGAGACTGTGACTATAAGTGATGATGAAGATGTGCGTGAACCTTCGAGTTTCAACCCAGCAGAAACCGTAGAATCTAAAGTCCAGTACAAATCGGTGAGGGAAATGTTTGGAAGCGatgaatttgtatatattatggaTGCTAAGAATACCGGAAATATTGgaagatatttaaatcATTCCTGTACTCCGAATATCTTCGTGCAGAATGTGTTCGTGGACACGCACGATGTCCGATTTCCTTGGGTCTCCTTTTTTGCAATCAATTACATAAGGGCCGGCACCGAACTCACTTGGAACTATAATTACGATATCGGCAGCGTTCCTGGTAAAGTTTTGTATTGTCGGTGCGGTTCGGTCGAATGCAAAGGACGTTTGCTTTAA
- Protein Sequence
- MSKEVISSSLDNAASSSVVIVLDDDEQPAVIDLVGQAPAGDRKCINYSCQSGINLINPPNFCLSYYRVKNGSSKKQMICMECFHLAVQTFDVLCQSLTDDNGDIMEVDIPVRDVTVAIDDSDSDGEEKEADVMIDDDTMKMLEENFDDVLSNTLEMVKYEQKVEKAVGTLKKKYEANNESYTELKTMIDSIRKEVDSMLFGLYKTMKPTNEILPELIIEDRPLRVYENISKRSDGCQTETRIQTRNKTMAAIADMKTEVIEPMEPPADLPIRTILEKPPLITGNQYYVKKNSNLSSWVKVTLDKILGPNNGSQVFQVVRETSGSGIAQRRTVNGKEIAYSEKSNVMLDVGKRVIALFKEFGDLKSSKRDAYYPGVVGEFPTQHNRYRYLVFFDDGYAHYVHYNNVFLVYHQNDNVWEDVNTDSMAFIRKYVTEYPNRSMVKLQKNQVFRTEFRSRWYMTTVLNIDCSLAQIYFESLKRVEWIYRGSRRFNIMYKELQATDSRLQNRQRHHRSAYIQATSGKTPYVQYTRDDDVICVDDTAKTEIRSVAKKSTRPPSTISPKPLIPEAKDNTIKPENRPPGKIVYYTPKRQNPLMKVYKLHDCNESCQQEMITSLSRLRGYGPLAKPLLCGFYRLHKKIKGKKPCVVYKTPCGRTVRNMPELHDYLQEIKSDLTVDLFSFDYYVRCLAEFILEPNSPVIKDLSTGFEEIPIPVVNYVDNELNNFVNYSTKRMPMEGVNLNLDPEFLVGCDCEDDCSDKSKCSCWQFTLQGTKYLNKTKTAIGYNYRRLNEPVFTGIYECNSMCKCSKTCLNRVVQNPLQHKLQVFKTVNRGWGIRCINDIPQGSFICIYAGALLTEQMANEGGKNYGDEYLAELDYIESVEGFKEDYEHEAYTSDKDSEDEEGSRNETAKQRNHDEDFRPTMEDSDDSLESLNLWTRLRRAAAQYKTDSASKKVGSTSKMDVDETVTISDDEDVREPSSFNPAETVESKVQYKSVREMFGSDEFVYIMDAKNTGNIGRYLNHSCTPNIFVQNVFVDTHDVRFPWVSFFAINYIRAGTELTWNYNYDIGSVPGKVLYCRCGSVECKGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01059111;
- 90% Identity
- iTF_01059111;
- 80% Identity
- -