Nvir009744.1
Basic Information
- Insect
- Netelia virgata
- Gene Symbol
- -
- Assembly
- GCA_951802705.1
- Location
- OX637865.1:24555971-24558962[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.06 5 8.0 4.5 2 19 435 452 434 455 0.92 2 13 3.3e-05 0.0027 18.2 3.4 1 23 490 513 490 513 0.96 3 13 0.0081 0.68 10.7 0.9 1 23 526 549 526 549 0.97 4 13 0.011 0.89 10.3 2.9 1 23 577 600 577 600 0.96 5 13 0.021 1.8 9.4 0.5 1 21 606 626 606 630 0.89 6 13 6.8 5.7e+02 1.5 3.3 1 10 643 652 643 667 0.86 7 13 0.1 8.8 7.2 0.1 1 23 672 695 672 695 0.96 8 13 5.2e-06 0.00043 20.7 1.1 1 23 709 731 709 731 0.98 9 13 3.1e-08 2.6e-06 27.7 0.4 1 23 737 759 737 759 0.99 10 13 0.0043 0.36 11.5 1.8 1 23 765 787 765 787 0.97 11 13 0.0097 0.82 10.4 4.4 1 23 793 815 793 815 0.98 12 13 8.1e-06 0.00068 20.1 1.6 1 23 821 843 821 843 0.99 13 13 0.00012 0.0098 16.5 1.8 3 23 851 872 849 872 0.94
Sequence Information
- Coding Sequence
- ATGCTCACTTTGATTCTGCAAACTCAGGAGGGACATCAGATTGAATTAAACGTCCAACCTGAAGATACATTCGCGGATTTAAAACGTCAATACTCTGACAAAGAAATTCTTGGCTTGTCCGATTCCCTTGAGCAGCTTATTACTAATGGAGCTAGTGTAtcagaaaatacaaagatATTCGATTATGTAACTGGAAGTGCCCAAGAATGGTTCACTGCAGATGTTGCGGACGAGCCTGATACTTCAGGCACTACACCTATAGAAGTAAATATCAGAGAATGTTGCGCACACGACTGTTCTAATACCGAAATCACAACCCCTGGTAAACCATTTTTTCCTCTGGCCATCGCAGATAACGAGAGACTATCCTTACGCTTGGTCGAAATAGGCAGGCTGGATTTGTACGACCAACTTTCCATGCAAGCCTGTCCGAAGTATTTTTTATGCAGTACTCACATCGGCAATGAGACCTTGCATAGCGATGGCGAACAGGCATCGACGCTTTCGTTATCAAAACCCAAAAGCGATTGTTCGCAGTTGAATATTTTcgggaatacaatttttacgaaaacgcaAGATATAACTGACGATAAGTTATCGGACATCGAATTTGGGAGTAAGAATCGTATGCCAGAAGAGTCCGATTCCATCGAAACTTTCCAGCATCCTGGAATTCTCTGTCGTTTGTGCGGCGAAGTTGCTGCAAATCCTGTCCACTTATATGCCAATGCGATTGATAATCTCGAGGAAGAGTTCAACCTCGTGGACAAAATCAATCTGTGCCTTCCTGTCAcgATTACCATTACGGATCCATTGCCGAAACAAATATGTCAAGATTGTCACATGAAATTGGATACTTGTCACGATCttgctctctcgtcgttgcaAGCTGAAGACAAGTTAACGTTGCTTTTGCGAGAAAAGAAACTATGCATCGACGATAACGCAGAGCTGAATTGCCCGCTCTGCGTCGAGGGTGACATGAAGATCGTTAAGAAGAGTggtttatatcgaaaaattgatttggAAAACGATTATTGTTGCGACAAGAATTCGAAAACGATCATTGCGTGCAAAGACGATTATGAAGATTTGTCGGTAAGGACGAAATCACATGTCCCAACATTGGACATTTCGGCGGATCGGCGACCAGCGACGTTCGAGACGGATCTGAAATTACTGGCCGATAATTCGCTTCCATCGCCGGATGGAGAATTTATGAATAGATCGAGCAAACCGTCCGTTCCCAACAGCGAAAGACTCGTAACGACGAGCAACGCAATAACCAACTACTGGGAACTTTGCTGTAAAGCTTGCAACAGAACATTTTCGAGTAACGAATCGTTGAAAGATCACAATTGCTATCAAAATCCGTTGGAGTCTGACAATACCGAAGAGATGTTTCGCGTAATATCGGAAAACACCGAGAGAAGTACAAAGTTATTTCGTAAGAAACCAATTGTTCGTTACAATTGTCATTTCTGTCAAAGGCAATTCACACGAAAGGAAAGCCTCGAAAAGCACATAACGATTTTACACGGGGATCAGTTCAACGATGAGACGGCGTCAAAATGTTACAAGTGTAAAAATTGTTACGAAGCTTTCCCGCGCGAAACAGACGCGGTTCATCACGCGAGAGTTAAACATTACGAATCGTCGCTCGACGAGGCTCGCGCGAATACGAACCAACGAGAATCCTTACTGGAGGAATTGATCGTAACGAGTTTATACATTTGCGAATTTTGCGAGGTTTGTTTTACGTTGCCGAGCTCGCTTCACGATCATAGAGAGTCGAAGCATGCGAACAATCTCAAATACTTGTGCACAATGTGCAACGCTATGTTCGATTCGCAAAGACAATTAGCTTACCACAAGAACGCACGTTCTCATCATAGGTTGTTCGATGGTGTCACGATAAAGCGTTTTTACCTTTGTAAATATTgcgagaaaacatttttgcacTATTACAGATATTCGTGTCACGTGATGCACCACCAGGAGACAACGAGGCCATATAGTTGCAGACTGTGCAATGTTAATTTCGAATCATACGGTGATGTCGCATTGCATCGAAACATAGCGCATCCTTATCGATTAACGTTCCACGACGGATCGTATCGCTCGTACGATTGTCAATATTGCAAGAAGAAATTCAATCGGGAGATAGCACTGGTGAAGCACATCAGAATGCACACGGGTGAGCGTCCGTATAAATGTACTATATGTGGCAAAGGATTTTCCCAGAGTTCAGGTCTAAACACACACGTGAGAGTTCATTCGGATCTCCGACCATTCACATGCACCAAGTGTCCCCGTACTTTCAAGATAAAAGGTGATCGTGACAATCACGTGAAACGACACGCCGGGAATCGTCCGTACAAGTGTGAATTTTGTACAAAAGCTTTCATGACTCAGCACGTTTACAGTCAACATCGTAAGATTCATACGGACGAGAGACCCTACAAGTGTGAAATTTGCGCCCAGGCTTTCAGACGATCTCACGTACTTACGGTTCACATGAGACGGCACACTGGTGAAAAGCCACATTTATGCGATCTCTGCCCGAAAACTTATCGTCAACGTGGCGATCTTCTCAAACACCGGAAGATACAGCACGGTGTCATCGGAAGTTCCAAGTCCGTTTTCGAGGAAAATACGTATCACGACGATGTCTAcgatttttgtatcaaaaCGAACAGCAAACAGACGGATTCTAGTGGCGGTTGTAACTCGTTGTTATTGCCTCTttga
- Protein Sequence
- MLTLILQTQEGHQIELNVQPEDTFADLKRQYSDKEILGLSDSLEQLITNGASVSENTKIFDYVTGSAQEWFTADVADEPDTSGTTPIEVNIRECCAHDCSNTEITTPGKPFFPLAIADNERLSLRLVEIGRLDLYDQLSMQACPKYFLCSTHIGNETLHSDGEQASTLSLSKPKSDCSQLNIFGNTIFTKTQDITDDKLSDIEFGSKNRMPEESDSIETFQHPGILCRLCGEVAANPVHLYANAIDNLEEEFNLVDKINLCLPVTITITDPLPKQICQDCHMKLDTCHDLALSSLQAEDKLTLLLREKKLCIDDNAELNCPLCVEGDMKIVKKSGLYRKIDLENDYCCDKNSKTIIACKDDYEDLSVRTKSHVPTLDISADRRPATFETDLKLLADNSLPSPDGEFMNRSSKPSVPNSERLVTTSNAITNYWELCCKACNRTFSSNESLKDHNCYQNPLESDNTEEMFRVISENTERSTKLFRKKPIVRYNCHFCQRQFTRKESLEKHITILHGDQFNDETASKCYKCKNCYEAFPRETDAVHHARVKHYESSLDEARANTNQRESLLEELIVTSLYICEFCEVCFTLPSSLHDHRESKHANNLKYLCTMCNAMFDSQRQLAYHKNARSHHRLFDGVTIKRFYLCKYCEKTFLHYYRYSCHVMHHQETTRPYSCRLCNVNFESYGDVALHRNIAHPYRLTFHDGSYRSYDCQYCKKKFNREIALVKHIRMHTGERPYKCTICGKGFSQSSGLNTHVRVHSDLRPFTCTKCPRTFKIKGDRDNHVKRHAGNRPYKCEFCTKAFMTQHVYSQHRKIHTDERPYKCEICAQAFRRSHVLTVHMRRHTGEKPHLCDLCPKTYRQRGDLLKHRKIQHGVIGSSKSVFEENTYHDDVYDFCIKTNSKQTDSSGGCNSLLLPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01056296; iTF_01057121;
- 90% Identity
- -
- 80% Identity
- -