Nmel015603.1
Basic Information
- Insect
- Netelia melanura
- Gene Symbol
- -
- Assembly
- GCA_964007305.1
- Location
- OZ023257.1:14273948-14276934[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.3 5e+02 2.1 0.0 3 16 227 240 226 242 0.89 2 14 5 5.8e+02 1.9 0.7 3 16 277 290 275 292 0.90 3 14 2.5e-05 0.0029 18.6 0.7 1 23 489 512 489 512 0.96 4 14 0.88 1e+02 4.2 1.6 1 23 525 548 525 548 0.96 5 14 0.0026 0.3 12.2 2.3 1 23 575 598 575 598 0.96 6 14 0.0007 0.081 14.0 1.9 1 22 604 625 604 628 0.91 7 14 4.1 4.8e+02 2.1 5.4 1 10 641 650 641 663 0.78 8 14 0.1 12 7.2 0.1 1 23 670 693 670 693 0.95 9 14 5.7e-06 0.00067 20.6 0.6 1 23 707 729 707 729 0.98 10 14 3.1e-08 3.6e-06 27.7 0.4 1 23 735 757 735 757 0.99 11 14 0.0062 0.72 11.0 1.6 1 23 763 785 763 785 0.97 12 14 0.0095 1.1 10.4 4.4 1 23 791 813 791 813 0.98 13 14 7.9e-06 0.00092 20.1 1.6 1 23 819 841 819 841 0.99 14 14 2.3e-05 0.0027 18.7 1.5 1 23 847 870 847 870 0.96
Sequence Information
- Coding Sequence
- ATGCTCACTTTGATACTGCAAACTCAGGAGGGAGATCAGATTGAATTGAACGTCCAACCTGAAGATACATTCGCGGATTTGAAGAGTCAATACTCTGACAAAGAGATTTTTGGCTTGTCTGATTCCCTTGAGCAGCTTATTACTAATGGAGCTAGTGTAGCAGAAAATACAAAGATATTCGATTATGTAACTGGAAGTGCTCAAGAATGCTTCACTACAGATCTTGCGGAAGAGCCTGATAATTCAGGCATGACAGATATAGAACAAAATATCAGAAAATGTTGTGCACACGACTGTACCAATACCGAAAGTACAACCCCTGGTAAACCATTTTTTCCACTGTCCACCACAGATAATGAGAGACTATCCTTACGTTTAGTCGAAATAGGCAGGCCGGATCTGTATAACCAACTTTCCACCGAAGACTGTCGGAAGTATTTTTTATGCAGTACTCATGTTGATCATGAGACCTTGCACAGTGATGGTGAACAAACATCGATGCTTTCATTACCAAAAACCAAAAGCGATTGTTTGCATTTGAATACGTTCGAGGAAcccatttttataaaagagcAAGAAGTAACTGATGATAAGTTATCGGACATTGAATTTGAGAATAAGAATGTTATGCCGGAACAGACCGATGCTGTCGAGAATTTCCAGCATCCTGGAATTCTCTGTCGTTTGTGTGGCAAAGTTGCTGCAAATCCTGTCCACTTATATGCAAATGCAATTGATGATCCAGAGGAAGAGTTTAACCTTGCAGACAAAATCAATCTGTGTCTTCCAATCACGATTACCATTACGGATCCATTGCCAAAACAAATATGCCAAGATTGTCACACGAAGTTGGACACTTGTCACAATCTTGCTCTCTCGTCGTTGCAAGCTGAAGACAAGTTAACATTGCTTTTACGAGAGAACAAGCTCTGCATCGACAACAATTCAGAGCCGAATTGCCCACTCTGCCTCGAGGGTGACATGAAGATCGTTAAGAAGTCTGGTTTATATCGGAAAATTGATTTGAAAGACGATTTGTGCTGCGATACGACTTCAAAAACGATGACTGCTTGTGAAGACCATTACGAAGATTTGTCGGAAAGCACGAAATCACATGTCCCGGCATTAGACGTTTCAGTGGCAAGACCAACGACGTTCGAGACTGATCTGAAACTACTGGACAATAATTCGCTTCCATTGCTGGATGGAGAATCTGTGAATAGAACGATCAAACCGTCCGTTTCCAAGAGCGAAAGACTTGTAACAACCAGCGACGCAAGAACCAAGTACTGGGAACTTGGCTGCAAAGCTTgcaacgaaatattttcgagcgACGAATCGTCGAAGGAGCACAATTGTCATCAAAACGCGGTCGAATTTGAGAATACTGAAGACACGCCTCGTGTAATATCAGAAAACACCGAGAGAAGCGCAAAGTTATTTCGTACGAAACCAATCGTTCGTTACAATTGTTATGTCTGTCAAAGAGAATTCACACGGAGGGAAAGCCTGGAAAAGCACATAACGATTTTACACGGCGATCAGTTGAACGATGAGAAGGCATCAAAATGTTACAAGTGTAAAAATTGTTGCGAGGCTTTCGGGCGCGAAGCGGACGCGGTTCATCACGCGAGAGTTAAACATTGCGAATCATCGCTTGACGCTCGTGTGAATACCAACGAACGAGAATCCTTACTGGAGGAATTGATCGTAAGGAGTTTATACGTTTGCGAATTCTGCGAGCTTTGTTTTACGTTGCCGAGCTCGCTTCACGATCATAGAGAGTCGGAACATGGGAAGAATCTCAAATACATGTGCACAATGTGCAAAGCTACGTTCGATTCGCAAAGACAATTAACTAACCACAAGAACTCACGTTCCCATCATAAGTTGTTCGACGATGTCACGATAAAGCGTTTTTACGTTTGCAAATATTGCGAGAAGACTTTTCTGCACTATTCCAGATATTCTTGTCACGTGAAGCAGCATCAAGAGACAAACACACCTTATGTTTGCCGACTGTGCAACGTTAATTTCGAATCGTACAGTGCCGTTGCATTGCATCGAGAAATAGCGCATCCTTATCGATCAACGTTTCACGAGGGATCGAATCGATCGTACGATTGTCAATATTGCGAGAAGAAATTCAATCGGGAGATAGCATTGGTGAAGCACATCAGAATGCACACGGGTGAGCGGCCTTATAAATGTACGATATGTGGCAAAGGATTTTCCCAGAGTTCTGGTCTAAACACACACGTGAGAGTTCATTCGGATCTTCGACCATTCTCATGCACCAAATGTCCACGTACTTTCAAGATAAAAGGCGATCGGGACAATCACGTGAAACGACACGCCGGGAATCGTCCGTACAAATGTGAATTTTGTACAAAAGCTTTCATGACTCAGCACGTTTATAGTCAACATCGTAAGATTCATACCGACGAGAGACCTTACAAGTGTGAAATTTGTGCTCAGGCTTTCAGAAGATCTCACGTACTTACGGTTCACATGAGACGGCACACTGGCGAAAAGCCGCATGTATGTGATCTCTGCCCGAAAACTTATCGTCAGCGTGGAGATCTTCTCAAGCACAGGAAGATACAGCATGGTATCATCAGCGGTTCCAAGTCTGCTAATGTTTCAGAGGACAATACCTTTCACGACgatgtctacgatttttttagcAAAACGAATAGCAAACAGACGGATGGTAGAGGAGGCTGTAACTCGTTGTTATTGCCACTTTGA
- Protein Sequence
- MLTLILQTQEGDQIELNVQPEDTFADLKSQYSDKEIFGLSDSLEQLITNGASVAENTKIFDYVTGSAQECFTTDLAEEPDNSGMTDIEQNIRKCCAHDCTNTESTTPGKPFFPLSTTDNERLSLRLVEIGRPDLYNQLSTEDCRKYFLCSTHVDHETLHSDGEQTSMLSLPKTKSDCLHLNTFEEPIFIKEQEVTDDKLSDIEFENKNVMPEQTDAVENFQHPGILCRLCGKVAANPVHLYANAIDDPEEEFNLADKINLCLPITITITDPLPKQICQDCHTKLDTCHNLALSSLQAEDKLTLLLRENKLCIDNNSEPNCPLCLEGDMKIVKKSGLYRKIDLKDDLCCDTTSKTMTACEDHYEDLSESTKSHVPALDVSVARPTTFETDLKLLDNNSLPLLDGESVNRTIKPSVSKSERLVTTSDARTKYWELGCKACNEIFSSDESSKEHNCHQNAVEFENTEDTPRVISENTERSAKLFRTKPIVRYNCYVCQREFTRRESLEKHITILHGDQLNDEKASKCYKCKNCCEAFGREADAVHHARVKHCESSLDARVNTNERESLLEELIVRSLYVCEFCELCFTLPSSLHDHRESEHGKNLKYMCTMCKATFDSQRQLTNHKNSRSHHKLFDDVTIKRFYVCKYCEKTFLHYSRYSCHVKQHQETNTPYVCRLCNVNFESYSAVALHREIAHPYRSTFHEGSNRSYDCQYCEKKFNREIALVKHIRMHTGERPYKCTICGKGFSQSSGLNTHVRVHSDLRPFSCTKCPRTFKIKGDRDNHVKRHAGNRPYKCEFCTKAFMTQHVYSQHRKIHTDERPYKCEICAQAFRRSHVLTVHMRRHTGEKPHVCDLCPKTYRQRGDLLKHRKIQHGIISGSKSANVSEDNTFHDDVYDFFSKTNSKQTDGRGGCNSLLLPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01057867;
- 90% Identity
- -
- 80% Identity
- -