Basic Information

Insect: Netelia virgata
Gene Symbol: LST
Assembly: GCA_951802705.1
Location: OX637864.1:33351077-33362721[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.19 16 6.4 3.8 1 23 405 427 405 427 0.98

2 19 0.00022 0.019 15.6 0.8 2 19 463 480 462 484 0.90

3 19 0.0085 0.72 10.6 4.8 1 23 490 512 490 512 0.98

4 19 0.0015 0.13 13.0 0.1 3 23 520 541 518 541 0.92

5 19 2.8 2.3e+02 2.7 1.1 1 23 548 571 548 571 0.96

6 19 6.1e-05 0.0051 17.4 0.7 1 23 575 597 575 597 0.97

7 19 0.0028 0.23 12.2 0.5 1 23 603 625 603 625 0.98

8 19 8.5e-05 0.0072 16.9 2.0 1 23 631 653 631 653 0.96

9 19 2.6e-06 0.00022 21.7 2.9 1 23 658 680 658 680 0.97

10 19 5.2 4.4e+02 1.9 0.2 3 20 1049 1066 1047 1068 0.90

11 19 5.2 4.4e+02 1.8 1.5 1 23 1075 1098 1075 1098 0.95

12 19 7.7e-05 0.0064 17.1 0.2 1 23 1104 1126 1104 1126 0.98

13 19 0.4 34 5.4 1.2 1 23 1132 1154 1132 1154 0.95

14 19 7e-06 0.00059 20.3 0.7 2 23 1161 1182 1160 1182 0.97

15 19 1.5 1.3e+02 3.5 1.9 1 20 1189 1208 1189 1212 0.89

16 19 1.9e-05 0.0016 18.9 2.8 1 23 1216 1238 1216 1238 0.98

17 19 0.13 11 6.9 2.9 1 23 1243 1265 1243 1265 0.98

18 19 1.4e-07 1.2e-05 25.7 0.5 1 23 1271 1293 1271 1293 0.98

19 19 0.0016 0.14 12.9 1.2 1 21 1298 1318 1298 1319 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.19	16	6.4	3.8	1	23	405	427	405	427	0.98
2	19	0.00022	0.019	15.6	0.8	2	19	463	480	462	484	0.90
3	19	0.0085	0.72	10.6	4.8	1	23	490	512	490	512	0.98
4	19	0.0015	0.13	13.0	0.1	3	23	520	541	518	541	0.92
5	19	2.8	2.3e+02	2.7	1.1	1	23	548	571	548	571	0.96
6	19	6.1e-05	0.0051	17.4	0.7	1	23	575	597	575	597	0.97
7	19	0.0028	0.23	12.2	0.5	1	23	603	625	603	625	0.98
8	19	8.5e-05	0.0072	16.9	2.0	1	23	631	653	631	653	0.96
9	19	2.6e-06	0.00022	21.7	2.9	1	23	658	680	658	680	0.97
10	19	5.2	4.4e+02	1.9	0.2	3	20	1049	1066	1047	1068	0.90
11	19	5.2	4.4e+02	1.8	1.5	1	23	1075	1098	1075	1098	0.95
12	19	7.7e-05	0.0064	17.1	0.2	1	23	1104	1126	1104	1126	0.98
13	19	0.4	34	5.4	1.2	1	23	1132	1154	1132	1154	0.95
14	19	7e-06	0.00059	20.3	0.7	2	23	1161	1182	1160	1182	0.97
15	19	1.5	1.3e+02	3.5	1.9	1	20	1189	1208	1189	1212	0.89
16	19	1.9e-05	0.0016	18.9	2.8	1	23	1216	1238	1216	1238	0.98
17	19	0.13	11	6.9	2.9	1	23	1243	1265	1243	1265	0.98
18	19	1.4e-07	1.2e-05	25.7	0.5	1	23	1271	1293	1271	1293	0.98
19	19	0.0016	0.14	12.9	1.2	1	21	1298	1318	1298	1319	0.93

Sequence Information

Coding Sequence: atggagatgAAGTTGGAGGAAGCGCAAATCTGCAGACTATGCGGAGAATGCGAGAGTATATACATCGATGTTTTCGGCGAGGAAGGCACAAAGAGATTTCTCGGCATCAAGATTCATACGAAAATCAACATTGTGATAGATGAGACGGACCCTCTGCCCAAGGCGATCTGTGTACAGTGTTTGGGCAAGCTCGAATTCGTTTGCGACTTTCAAGAGGAGTGTCTACGCACCCAACAAGTGTTGCGCGAACGATACAATCTGCCACCATTAACAGACGTTgacgagataaaaatcgagGAATCTACTGTCGACGCGGCTggaaaatcaacaaacaacaacagcaCTGACAAAAATCTTAATCCCCCGTTGGAAAATGAaatcgaaataacgaacgcGTACGATAAGGGTCTAAGCGAAAATGTTGCTACTCCAAAACCGAAGAAGAAAGTACGTAATCGTCGCAGATCGATATCGCAAAGCGAGAATGAAAAACCCAACAGCGAACACGAAAATTGTCCTCGTGAGACGTCGACACCAATCGAAAATGTCAACAAGCGTTGGCTTCGAAGTCGAAACTCTGCGGCGCCATCAACGACCACGACGACTTCGAATCAGCCTTCGAAAACACCAACTGCATCAATAGCGAGTAGATTAAGAAGTCAGAGCGATTCGCCGGACAAGACCAAGGAGACCATTGAAAATTCTCCGTCGGCTCCAGGGCCAAAGTCGAAATGCGACGAAACAAGCATGATACAAATCCCAACTTCGGCATTGAACAAAGTTCTGACCGTTGTCTCGAGTTCTCCAGAGATGGAAGTTTCGGTAAAAGAATCGACGAAACGTCAAGGCGACATAGAAGACATAAGTTTCACTCTCGAGTTACGACGCAAGAAACGCGACAACGAATTGATGACGGTCCTTGCCAAGGTATTTCCCGATCAAGGCTCGTGTCTCGTCGGTTCAGGCATCGTCGATCTTctcgagaacgaaaacaacGCCGAGGTCGACAAAATCGTTAGTACGATAATAAACGGCTCGatcggtagaaaaaaaaacggcactAGCGATGTGggcgaaataacgaaaatcgcTGAACTCGAGGAGATGGAGAAGAGACTAACCACTAGTCAGAATCCTGAGGAATTATACAGGGTCGACGGCGAGGAGATACGCGTCGATGACAATATCGAGTACGTCGACAGTCAGACAGGTTACGCCTGCAAGTTGTGTCGAAAGATGTACGAGCGTCGCGACAAATGTACCGTCCACGTTAAAACCCATCTAGGCATAAAACAATACGCCTGTACGCTCTGTTGCGCAAAGTTTGTCTGTAAATCCGACGTTATGAAGCACATAAGATGTTCCCATACCAATCCACGTCCAATGCAATGTCCTAAGTGCCCCAAGAGATTCAGATCAAAGTTCGATCTCACGGAGCACGACAATGTCCACAAAGGGGTCAAGCCTTATCGTTGCGACAATTGCGAGCAGAGCTATCATCACAAAGTATCGTTGCAGATGCACGTTAAGTCTCATCAGCCACCCCAGAATCTCGCTTGCGAATATTGTGGAAAGGTATTTCCATTTCGTACGCGTCTTCTGTCTCACATAGGAAGCGTACATTTGAAAAACCGGCGCAACTTTCGTTGTCGTTTCTGCTACAATCTCTACTCGAGTCTAGCAGTGCTCAACGATCACATAAAGTCGCGTCATGCTACGACTTATACTTGCGAGATTTGTTCGAAAACTTTCAAAGTTGCATCAAAGTACAAGGCGCACGTGCTGCAACATTCCAATCCAAAGCCATTCGTTTGTAACGTCTGCAACAATCGATACGCCTCAAAAGCTTTTCTCAACGAGCATCTGCTCAAGCACGAGGGACTGCGCAAAcacatttgccaaaaatgtggCGCTAGCTTTGCTCAGGCGAGTCATTTGGCTGCTCATCGTCACGTACACGGTGAAAAGATTCACGTTTGTCCCGATTGCGGACGTAAATTCAACAGACGCGACAACATGAAAGTACATCGCAAGAGGCATTTCGACAAGAACGGTGGCAAGAGCCAAGACGGGAACGAGATGAGCGACGGAAGTGTCGCTGATCCgaCTGACGGATTGCCTCACAAAGTCTGTGTAAGATGTCTCGGAGCTTTGGAATTTCTGTGCGACTTTCACGACCAATGTCACAAGACGCAGGAAAGATTGATCGAGGCGAAACAGACGCTGAAGAAATGTTCAAAAATAAGGGTTTCCCTGTCGCCGGACTTACCGAACGATGCCGATTCGGACAAGGAAAATTGTGCGCCAATAGTCAGAAGACCAGTCGCCAAGAGAAAAAGACAAGGAACAAACTCAGAAATTGCGaagatagaaaatatttcacacgTCGCCTGCAACAAGAGTCTAACGATCAATATTCAAGAGTCTGACAGATCTCAAGCGGATATGAAAATGGCCCAATATGACCAAGCGAAGAAGCCGAAGAATGGAATTGTCAAGAATATGGAATTATCATCGACTGCGGAAAGCGTGACGAGCGACAAAATAATCTCACCGCGAACATCCATAATGGTGGAGAAACAGATCATCACGAGTAATCCTGTCGTTCGCGTGGAAGAACCCACGGAGCGAAGGACTCGAAGCCGAACAAGTTGCAATTTTAATAATAGTAAACCTAAAACCCAAgatgaaatgaaattcaaatttgatTCACGTAACAACAAAACAATCTCCTCTATCGTTAAGCTTGAGAAGAATGAGCACtgcgacaaaaaaacgacaactttggggattgaaaaaatcgacaaatcgaacaaaattgtatggatACCTAATGATACGCCACTATTTCCTCAAACATCGAAGAATATGAGAATAGAAGAGTCGACCAAGTTtccagaagaaaaaaagaagacggaaAAGCCAGTTACGGAGAGCTCGTCGATTTTGggggaaaaaattaaagagaACGATTGTGAAGAGGGAGAAGGCAGCGAATTCCgtaaaaaatttggcaaaattaCAGATCTTATAAGCGATGAACAGAAAAGCGCTATCGAGAAGTATTACAGCGTCGACATGTCGAGCGTCGACGAGCGACTCGTTGgggaaaaaattcgatttctcGATCAGAAGAAATTTGGTTGTGTGCTTTGCGATGCGACTTATACGCGACAGGACAAATGTCAGGTTCATATTTGGGGACATCTGGAGATGAAACCATATCGCTGTAACGCCTGTGATTTCGCTACGGTGACCGTCAGCAATATACGCTGCCACGTGAGAAAAAGCCACCTGAAGATAAAACCTTACGCATGCGAGCTTTGCGAGAAGCGCTACGTGACCGCATTTCTTCTCGAGGAACACATGAACACGCACACAGGTTCGAGACCGTATACCTGCAATATATGCAATTTTACTAGCGCCAGTAGACAGGTACTCAGCTATCACAATACGACTCACAAACCCACCAAGGACATAACGTGTCATGAGTGTGGCAAAGAGTTTTACTCAAAGGGTCGTCTACGTGCTCATATGATTGTTCACGACAAGGACAAGAAGGCTCATATGTGTAAATTATGCTCGATATATTTGTGCAGCAACGAGGCACTTCAGAGACATAATGTTAATGTACATTCCAAGGATTACGTGTGCAACATTTGCGGCAAACGTTGTCAGTCCAAGAAATCTCTAAACAATCATCAGAACGTACATTCGGCCGCAAAATACAAGTGCACGTTGTGCTCCAACGTCTACAAAAGTAGTCACATACTCAAAGAGCATCTCTTGAAACACGAAGGCATAAGAAAGTACAAATGCAATACATGCGGCAAAGATTTTGCTCAGCAATCTCATCTTGCGGCTCACATGGCAGTTCATAGCGATAAACGATTCTTCTGTCCCGGATGTAAGCGTCCCTTCAACCGTCACGATAACATGAAGATGCATGCAAAACGTTGCGAGGCTTTCCTCGCCAATCCCGAGCTCAAGAGCATTCTGAAAGTGCGAAGAAGTCGAAGCAAGCCTGccacgaacgaaggaaaatctGTTGGGGAGTTGCAAGAACCCACAGAAAGGATGGTTCTATCTCAAACTGAACATGTCAAGACTgattttaatacaaataacGGGCCGATTGTCAATAATCGGTTCGAAATATTCACGAATTCTAATGACTCCACAGGCATCGACAATGGTCCGGTCGTCGTCGAAGAAATGATTGTCCTCGAATGCACTTACGGCGGCCTTTCGAGTGATCGGACAACTCGGCAGTACTCGTACCGAGCATTCCTGCGACAATCGGTCTCGACGAGATTACGAAATTCAGTAGTTATAATTCGAAAGTTCGGAGTAAAGGCGACAATGGCCATGCACTTCCCAAAGAACGATGCTCTTGACGCTGAgctgacgaaaaaaatgcttgCGAAATTCACGGGCGAGAGAACGGGTTGGGTGAAGGTCGGCGAGAAAGGGTACCTATTTCCTCACAGATACACGGAACAGGGCGAAGGATTTTACAAGTTCAAGGCGAGACCGACCGACACGTGGGTTCTATCTTATCCAAGATCAGGTACTACGTGGACTCAAGAGTTAGTATGGTTGCTCAGCAACAATCTGGATTTTGAGAGCGCTGGGAAACGCTACCTTGCTGAGAGATTTCCCTTTCTTGAATTTAGTATATTCAATCATCCCGAGGTGACGGAAGAATTTGTCAAATTGAACGAGGGTGacaaggagaaagaaaaattgtgcaGAGATATTTCCATAGCAGGCTATCAAGTTTTAGAGACTCGTGAATCACCTAGATTCATCAAATCACATTTTCCACTTAGCTTGTTGCCTGGAATATTGGATAGCGGATGCAAAATAGTTTACGTTGCGCGAAATCCAAAGGACGTCGCCGTTTCTTGGTATCACCTTAATCGAGCTATACGTACACAGGGCTATCAGGGAGATTTTGAGGAATTCTGGAATTACTTTCGTAATGATCTcaCGCCATGGAGTCCCTACTGGGAGCACCTGAAGGAAGCTTGGGCACAGAGAAACCATccaaattttctctttttattttacgaagatATGCAAAGGgATCTGTCAAGAGCAATTGGTAAAGTAGCAACTTTTTTGGACAAGAAATACGATATCAAACAACTAACAAGGCTAGCGGATTACCtggatatacaaaattttcgtgaCAATCCGATGGTTAATTCATCGGAATTGCGGGATTGCGGCATAATACAAGCCGGGAATTTCGTAAGGAAGGGAAAGTCAGGTGGATGGAAAGAAACTTTCACCGCCGACCTCGAAGCAAGTGCCGATTCCTGGATCGAGGACAATCTCAGAGACACCGATCTTAGATTTCCCACTGTTGAAGCAAATGAGAACACTAATCGCGGTGCACTCTCGTTAACGATATGTCGTCGCGTCGATGATAAGAAACTGCTGACGATAATGCGCTAG
Protein Sequence: MEMKLEEAQICRLCGECESIYIDVFGEEGTKRFLGIKIHTKINIVIDETDPLPKAICVQCLGKLEFVCDFQEECLRTQQVLRERYNLPPLTDVDEIKIEESTVDAAGKSTNNNSTDKNLNPPLENEIEITNAYDKGLSENVATPKPKKKVRNRRRSISQSENEKPNSEHENCPRETSTPIENVNKRWLRSRNSAAPSTTTTTSNQPSKTPTASIASRLRSQSDSPDKTKETIENSPSAPGPKSKCDETSMIQIPTSALNKVLTVVSSSPEMEVSVKESTKRQGDIEDISFTLELRRKKRDNELMTVLAKVFPDQGSCLVGSGIVDLLENENNAEVDKIVSTIINGSIGRKKNGTSDVGEITKIAELEEMEKRLTTSQNPEELYRVDGEEIRVDDNIEYVDSQTGYACKLCRKMYERRDKCTVHVKTHLGIKQYACTLCCAKFVCKSDVMKHIRCSHTNPRPMQCPKCPKRFRSKFDLTEHDNVHKGVKPYRCDNCEQSYHHKVSLQMHVKSHQPPQNLACEYCGKVFPFRTRLLSHIGSVHLKNRRNFRCRFCYNLYSSLAVLNDHIKSRHATTYTCEICSKTFKVASKYKAHVLQHSNPKPFVCNVCNNRYASKAFLNEHLLKHEGLRKHICQKCGASFAQASHLAAHRHVHGEKIHVCPDCGRKFNRRDNMKVHRKRHFDKNGGKSQDGNEMSDGSVADPTDGLPHKVCVRCLGALEFLCDFHDQCHKTQERLIEAKQTLKKCSKIRVSLSPDLPNDADSDKENCAPIVRRPVAKRKRQGTNSEIAKIENISHVACNKSLTINIQESDRSQADMKMAQYDQAKKPKNGIVKNMELSSTAESVTSDKIISPRTSIMVEKQIITSNPVVRVEEPTERRTRSRTSCNFNNSKPKTQDEMKFKFDSRNNKTISSIVKLEKNEHCDKKTTTLGIEKIDKSNKIVWIPNDTPLFPQTSKNMRIEESTKFPEEKKKTEKPVTESSSILGEKIKENDCEEGEGSEFRKKFGKITDLISDEQKSAIEKYYSVDMSSVDERLVGEKIRFLDQKKFGCVLCDATYTRQDKCQVHIWGHLEMKPYRCNACDFATVTVSNIRCHVRKSHLKIKPYACELCEKRYVTAFLLEEHMNTHTGSRPYTCNICNFTSASRQVLSYHNTTHKPTKDITCHECGKEFYSKGRLRAHMIVHDKDKKAHMCKLCSIYLCSNEALQRHNVNVHSKDYVCNICGKRCQSKKSLNNHQNVHSAAKYKCTLCSNVYKSSHILKEHLLKHEGIRKYKCNTCGKDFAQQSHLAAHMAVHSDKRFFCPGCKRPFNRHDNMKMHAKRCEAFLANPELKSILKVRRSRSKPATNEGKSVGELQEPTERMVLSQTEHVKTDFNTNNGPIVNNRFEIFTNSNDSTGIDNGPVVVEEMIVLECTYGGLSSDRTTRQYSYRAFLRQSVSTRLRNSVVIIRKFGVKATMAMHFPKNDALDAELTKKMLAKFTGERTGWVKVGEKGYLFPHRYTEQGEGFYKFKARPTDTWVLSYPRSGTTWTQELVWLLSNNLDFESAGKRYLAERFPFLEFSIFNHPEVTEEFVKLNEGDKEKEKLCRDISIAGYQVLETRESPRFIKSHFPLSLLPGILDSGCKIVYVARNPKDVAVSWYHLNRAIRTQGYQGDFEEFWNYFRNDLTPWSPYWEHLKEAWAQRNHPNFLFLFYEDMQRDLSRAIGKVATFLDKKYDIKQLTRLADYLDIQNFRDNPMVNSSELRDCGIIQAGNFVRKGKSGGWKETFTADLEASADSWIEDNLRDTDLRFPTVEANENTNRGALSLTICRRVDDKKLLTIMR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01056267;
90% Identity: -
80% Identity: -