Basic Information

Insect: Netelia melanura
Gene Symbol: LST
Assembly: GCA_964007305.1
Location: OZ023254.1:41089856-41100743[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.18 21 6.4 3.8 1 23 405 427 405 427 0.98

2 19 0.00021 0.024 15.7 0.8 2 19 463 480 462 484 0.90

3 19 0.008 0.93 10.7 4.8 1 23 490 512 490 512 0.98

4 19 0.0014 0.17 13.0 0.1 3 23 520 541 518 541 0.92

5 19 2.6 3e+02 2.8 1.1 1 23 548 571 548 571 0.96

6 19 5.7e-05 0.0066 17.4 0.7 1 23 575 597 575 597 0.97

7 19 0.0026 0.3 12.2 0.5 1 23 603 625 603 625 0.98

8 19 8e-05 0.0093 17.0 2.0 1 23 631 653 631 653 0.96

9 19 2.4e-06 0.00028 21.7 2.9 1 23 658 680 658 680 0.97

10 19 1.7 1.9e+02 3.4 0.9 3 20 1040 1057 1038 1060 0.91

11 19 4.9 5.7e+02 1.9 1.5 1 23 1066 1089 1066 1089 0.95

12 19 7.2e-05 0.0083 17.1 0.2 1 23 1095 1117 1095 1117 0.98

13 19 0.38 44 5.4 1.2 1 23 1123 1145 1123 1145 0.95

14 19 6.5e-06 0.00076 20.4 0.7 2 23 1152 1173 1151 1173 0.97

15 19 1 1.2e+02 4.0 2.0 1 23 1180 1203 1180 1203 0.88

16 19 1.8e-05 0.0021 19.0 2.8 1 23 1207 1229 1207 1229 0.98

17 19 0.12 14 7.0 2.9 1 23 1234 1256 1234 1256 0.98

18 19 4.5e-08 5.3e-06 27.2 0.3 1 23 1262 1284 1262 1284 0.98

19 19 0.0015 0.18 12.9 1.2 1 21 1289 1309 1289 1310 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.18	21	6.4	3.8	1	23	405	427	405	427	0.98
2	19	0.00021	0.024	15.7	0.8	2	19	463	480	462	484	0.90
3	19	0.008	0.93	10.7	4.8	1	23	490	512	490	512	0.98
4	19	0.0014	0.17	13.0	0.1	3	23	520	541	518	541	0.92
5	19	2.6	3e+02	2.8	1.1	1	23	548	571	548	571	0.96
6	19	5.7e-05	0.0066	17.4	0.7	1	23	575	597	575	597	0.97
7	19	0.0026	0.3	12.2	0.5	1	23	603	625	603	625	0.98
8	19	8e-05	0.0093	17.0	2.0	1	23	631	653	631	653	0.96
9	19	2.4e-06	0.00028	21.7	2.9	1	23	658	680	658	680	0.97
10	19	1.7	1.9e+02	3.4	0.9	3	20	1040	1057	1038	1060	0.91
11	19	4.9	5.7e+02	1.9	1.5	1	23	1066	1089	1066	1089	0.95
12	19	7.2e-05	0.0083	17.1	0.2	1	23	1095	1117	1095	1117	0.98
13	19	0.38	44	5.4	1.2	1	23	1123	1145	1123	1145	0.95
14	19	6.5e-06	0.00076	20.4	0.7	2	23	1152	1173	1151	1173	0.97
15	19	1	1.2e+02	4.0	2.0	1	23	1180	1203	1180	1203	0.88
16	19	1.8e-05	0.0021	19.0	2.8	1	23	1207	1229	1207	1229	0.98
17	19	0.12	14	7.0	2.9	1	23	1234	1256	1234	1256	0.98
18	19	4.5e-08	5.3e-06	27.2	0.3	1	23	1262	1284	1262	1284	0.98
19	19	0.0015	0.18	12.9	1.2	1	21	1289	1309	1289	1310	0.93

Sequence Information

Coding Sequence: atggagaTGAAGTTGGAGGAGGCGCAAATCTGCAGACTATGCGGAGAATGCGAGAGTATATACATCGATGTCTTCGGCGAGGAGGGCACAAAGAGATTTCTCGGCATCAAGATTCATACGAAAATCAACATTGTGATAGATGAGACGGACCCTCTGCCCAAGGCGATCTGTGTACAGTGTTTGGGCAAGCTCGAATTCGTTTGCGACTTTCAAGAGGAGTGTCTACGCACCCAACAAGTGTTGCGCGAACGATACAATCTGCCACCATTAACAGACGTTGACGAGATAAAACTCGAGGAATCTACTGTCGACCCAGCTGGAAAATCaacaaacaacaacagcaTTGACAAAAATCTCAATCCTCCATTGGAGAGTGAAATTGAGATAACGAGCACATACGAGAAGGGCCTAATCGAAAATGTTCCTACTCCAAAGCCGAAGAAGAAAGTACGTACTCGTCGCAGATCGATATCGCAGAGCGAGAATGAAAAACCCAACAGCGAACACGAGAATTGTCCTCGCGACACGTCGACACCCATCGAAAATGTCAACAAGCGTTGGCTTCGAAGTCGAAATTCTGCAGCGCCATCAACGACCACGACGATTTCGATTCAACCTTCGAAAACACCAACTGCATCGATAGCGAGCAGATTACGAAGTCAGAGCGATTCGCCGGAGAAGAGCAAGGAGACGattgaaaattctttgtcCACTCCCGGGCCAAAGTCGAAATGCGACGAAACAAGCATGATCCAAATTCCAACGTCGGCGTTGAACAAAGTTCTGACTGTTGTTTCGAGCTCGCCAGAAATGGAAGTCTCGGTAAAAGAATCGACGAAACGTCAAGGTGACATAGAAGACATAAGTTTCACTCTCGAGTTACGACGCAAGAAACGCGACAACGAATTAATGACTGTCCTTGCCAAGGTATTTCCCGATCAAGGCTCGTGTCTCGTCGGTTCGGGCATCGTCGATCTTCTCGAGAACGAAAACAACGCCgaggtcgataaaatcgttAGTACGATAATAAACGGCTCGGTtagtagaaagaaaaatggcaCTAGCGATGTGGgcgagataacaaaaattgccGAACTCGAGGAGATGGAGAAGAGACTAAATACTAGTCAAAATCCTGAAGAGTTATACAGGGTCGACGGTGAAGAGATTCGCGTCGATGACAATATCGAGTACGTCGACAGTCAGACCGGTTATGCTTGCAAGTTGTGTCGAAAAATGTACGAGCGTCGCGACAAATGTACCGTCCACGTTAAAACGCATCTGGGCATAAAACAATACGCCTGTACGCTCTGTTGCGCAAAATTTGTATGCAAATCCGACGTTATGAAGCACATAAGATGTTCCCATACCAATCCACGCCCAATGCAATGTCCGAAGTGCCCGAAAAGATTCAGATCGAAGTTCGATCTTACGGAACACGACAATGTTCACAAAGGGGTGAAACCCTATCGTTGTGACAACTGCGAGCAGAGCTATCATCACAAAGTATCGTTACAGATGCATGTTAAGTCTCATCAGCCACCCCAGAATCTCGCTTGCGAATATTGTGGAAAGGTATTCCCATTTCGTACGCGTCTTCTGTCTCACATTGGTAGCGTGCATTTGAAAAACCGACGCAACTTTCGATGTCGTTTCTGCTACAATCTCTACTCGAGTCTGGCAGTACTGAACGATCACATAAAGTCACGTCATGCTACGACTTACACTTGTGAGATTTGTTCGAAAACTTTCAAAGTTGCATCAAAGTACAAGGCACACGTGCTGCAACATTCCAATCCAAAGCCATTCGTTTGTAACGTCTGCAACAATCGATACGCCTCGAAAGCTTTTCTCAATGAGCATCTGCTCAAGCACGAGGGACTGCGAAAAcacatttgccaaaaatgtggCGCCAGCTTTGCTCAGGCGAGTCATTTGGCCGCTCATCGTCACGTACACGGTGAAAAGATTCACGTTTGTCCCGATTGCGGGCGTAAATTCAACAGACGCGACAATATGAAAGTACATCGCAAGAGACACTTCGACAAGACCGGTGGCAAAAGCCAAGACGGGAACGAGATGAGCGACGGAAGTATCAACGAAGCTGATGGATTGCCTCACAAAGTCTGTGTAAGATGTCTCGGAGCTTTGGAATTTCTCTGCGACTTTCACGACCAATGTCACAAGACTCAGGAAAGATTGATCGAGGCGAAACAGAAGCTGATGTTCAAATGTTCAAAGACGAGGGCTTCCTTGTCGCCGGACTTACCGAACGACGCCGACTCGGACAAGGAAAATTGTGCGCCAATAATCAAACGATCAGTAGCCAAGAGAAAAAGACAAGGAACTCCATCAGAAATTacgaagatagaaaaaagcTATAAAGATATTCAAGAGTCCGACAGATCTCAAGGGGATATGAAAATGGCTCAATATGATCAAGCGAAGAAGACGAAACATGGAATTGTCGAGAGTATGGATGTATCATCGACTGCAGAAAGTGTGGCgagcgataaaataattttaccaCCAACGTCCGTGATTGTAGAGAAACAGACTTCCGCGAGCAATCCCGGGGTTCACGAGGAAGAACCTACGGAGCGAAGAACTCGAAGCCAAACAAGCtgcaatattaataatagtaCACCTAAAACCCAAGATGAACCGAAATTCAAATTACATTCACGTAACAGCAAAACAATCTCCTCTATTGTTAAGATTGAGAAGAATGAGCACTGCGACGAGAAATCGACAACTTTGGGGACTGAAAGAATAGacaaatcgaacaaaattgtATGGATACCTAAAGATACGCCAGTATTTCCTTTAGCAGAGAAGAATATGGGAATGGAAGGATGGAACGAGTGTccagaagaaaagaagaagactgAAAAGCTAGCTAAAGAGACGCCATCGTCTTTGGGCCAGAAAATGAAAGAGGACTATTGCGAAGAGGGAGAAGGCAATGAATTACGtaaaaaatttggcaaaattACAGATCTTATAAGCGATGAACAGAAAAACgctatcgaaaaatattacagCGTCGACATGTCGAACGTGGATGAGCGACTCGTTGGGGAGACGATTAGGTTTCTTGATAAGAAGAAATTTGGTTGTACTCTATGTGATGCGACTTATACACGACAGGACAAATGTCAAGTTCATATTTGGGGACATCTAGATATGAAACCATATCGCTGCAATGCCTGTGATTTTGCTACGGTCACTGTTAGCAATATACGCTGTCACGTGAGAAAGAGCCACCTGAAGATAAAACCGTACGCATGTGAGCTTTGCGAGAAGCGCTACGTGACCGCGTTTCTTCTCGAAGAACACATGAACACTCACACAGGTTCGAGACCGTATACCTGCAATATATGCAATTTTACTAGCGCCAGTAGACAGGTACTCAGCTATCACAATACGACTCACAAACCGACCAAGGACATAACGTGTCACGAGTGTGGCAAAGAGTTTTACTCAAAGGGTCGTCTCCGTGCTCATATGATTGTTCACGACAAGGACAAGAAGGCTCATATGTGCAAATTATGCTCGATATATTTGTGCAGCAACGAGGCATTGCAGAGACATAATGCTAATGTCCACTCCAAGGATTACGTGTGCAATATTTGCGGCAAACGTTGTCAGTCCAAGAAATCTCTAAACAATCATCAGAATGTACATTCGGCCGCAAAATACAAGTGCACGCTATGCTCCAACGTCTACAAAAGCAGTCACATACTCAAGGAGCATCTCTTGAAGCACGAAGGCATAAGAAAGTATAAATGCAATATATGCGGCAAAGATTTTGCTCAGCAATCTCATCTTGCGGCTCACATGGCAGTTCATAGCGATAAACGATTCTTCTGCCCCGGATGTAAGCGGCCGTTCAATCGCCACGATAACATGAAGATGCATGCAAAACGTTGCGAGGCTTTTCTCGCCAATCCCGAACTCAAGAGCATTCTAAAGGTGCGAAGAAGCAGAACTCAAATGATATTGCACAGTTACGAAGGCGTTCCGAGTGATCGAACAACTCAGCAGCATTCGTATCCAGAGTTTCCGCGACGATTGAGCTTGACGAGATTTGGAAATTCAGTAGCTGCAGTTCGAAAGTTCGCAGTAAAGGCGACAATGGCCATGGCCTTGCCAACGATCAATGCCCTTGACGCGGAGCTGACGAAGAAAATGCTTGCGAAATTCACGGGTGAGAGAACGGGTTGGGTGAAAGTTGGTGAGAAAGGATACCTATTTCCTCACAGATACACAGAACAGGGTGAAGGATTTTACAAGTTCAAGGCAAGACCGACCGACACGTGGGTACTCTCTTATCCAAGATCGGGTACTACCTGGACTCAAGAGCTAGTCTGGTTGCTCAGCAACAATCTGGACTTTGAGAGGGCTGGGAAACACTACCTTGCTGAGAGATTTCCCTTTCTTGAATTTAGTATGTTCAATCATCCCGAGGTGACGgaagaatttatcaaattgaACAAAGGTGACAAAgctaaagaaaaattgtgcaGAGATATTTCCACACCAGGCTATCAAGTTTTAGAAAATCTTGAGTCACCCAGATTCATCAAATCACATTTTCCACTGAACTTATTGCCTGGAATATTGGACAGCGGATGCAAAATAATTTACGTCGCGCGAAATCCAAAGGACGTCGCTGTTAGTTGGTATCACCTTAATCGAGCTATACTCACACAGGGCTATCGTGAAGATTTTGAGGAATTCTGGAATTACTTTCGTAATGATCTCACGCCATGGAGTCCATACTGGGAACACCTGAAGGAAGCTTGGGCACAAAGAAATCATCCAAATTTGCTCTTCTTATTTTACGAAGATATGCAAAGGGATCTGCTAAATACGATTCGTAAAGTAGCAAactttttggacaaaaaataCGACATCAAACAACTAACAAGATTAGCGGATTATCTGgacataacaaattttcgtgaTAATCCGATGGTTAATTCATCAGAATTACGAGATTGCGGCATAATACAAGCTGGAAATTTTGTAAGGAAGGGAAAGTCAGGTGGATGGAAAGAAACCTTCACCGCCGACCTCGAAGCAAGCGCAGATTCCTGGATCGAGGAAAACCTCCGAGACACTGATCTTCGATTCCCCGATTTTGAAGCAAATGAGAACAACGATCGCGACGCATTATCGTTAACGGTATGTCGCGGCGACGATGATAAGAAACTGACCATAATGCGGTAG
Protein Sequence: MEMKLEEAQICRLCGECESIYIDVFGEEGTKRFLGIKIHTKINIVIDETDPLPKAICVQCLGKLEFVCDFQEECLRTQQVLRERYNLPPLTDVDEIKLEESTVDPAGKSTNNNSIDKNLNPPLESEIEITSTYEKGLIENVPTPKPKKKVRTRRRSISQSENEKPNSEHENCPRDTSTPIENVNKRWLRSRNSAAPSTTTTISIQPSKTPTASIASRLRSQSDSPEKSKETIENSLSTPGPKSKCDETSMIQIPTSALNKVLTVVSSSPEMEVSVKESTKRQGDIEDISFTLELRRKKRDNELMTVLAKVFPDQGSCLVGSGIVDLLENENNAEVDKIVSTIINGSVSRKKNGTSDVGEITKIAELEEMEKRLNTSQNPEELYRVDGEEIRVDDNIEYVDSQTGYACKLCRKMYERRDKCTVHVKTHLGIKQYACTLCCAKFVCKSDVMKHIRCSHTNPRPMQCPKCPKRFRSKFDLTEHDNVHKGVKPYRCDNCEQSYHHKVSLQMHVKSHQPPQNLACEYCGKVFPFRTRLLSHIGSVHLKNRRNFRCRFCYNLYSSLAVLNDHIKSRHATTYTCEICSKTFKVASKYKAHVLQHSNPKPFVCNVCNNRYASKAFLNEHLLKHEGLRKHICQKCGASFAQASHLAAHRHVHGEKIHVCPDCGRKFNRRDNMKVHRKRHFDKTGGKSQDGNEMSDGSINEADGLPHKVCVRCLGALEFLCDFHDQCHKTQERLIEAKQKLMFKCSKTRASLSPDLPNDADSDKENCAPIIKRSVAKRKRQGTPSEITKIEKSYKDIQESDRSQGDMKMAQYDQAKKTKHGIVESMDVSSTAESVASDKIILPPTSVIVEKQTSASNPGVHEEEPTERRTRSQTSCNINNSTPKTQDEPKFKLHSRNSKTISSIVKIEKNEHCDEKSTTLGTERIDKSNKIVWIPKDTPVFPLAEKNMGMEGWNECPEEKKKTEKLAKETPSSLGQKMKEDYCEEGEGNELRKKFGKITDLISDEQKNAIEKYYSVDMSNVDERLVGETIRFLDKKKFGCTLCDATYTRQDKCQVHIWGHLDMKPYRCNACDFATVTVSNIRCHVRKSHLKIKPYACELCEKRYVTAFLLEEHMNTHTGSRPYTCNICNFTSASRQVLSYHNTTHKPTKDITCHECGKEFYSKGRLRAHMIVHDKDKKAHMCKLCSIYLCSNEALQRHNANVHSKDYVCNICGKRCQSKKSLNNHQNVHSAAKYKCTLCSNVYKSSHILKEHLLKHEGIRKYKCNICGKDFAQQSHLAAHMAVHSDKRFFCPGCKRPFNRHDNMKMHAKRCEAFLANPELKSILKVRRSRTQMILHSYEGVPSDRTTQQHSYPEFPRRLSLTRFGNSVAAVRKFAVKATMAMALPTINALDAELTKKMLAKFTGERTGWVKVGEKGYLFPHRYTEQGEGFYKFKARPTDTWVLSYPRSGTTWTQELVWLLSNNLDFERAGKHYLAERFPFLEFSMFNHPEVTEEFIKLNKGDKAKEKLCRDISTPGYQVLENLESPRFIKSHFPLNLLPGILDSGCKIIYVARNPKDVAVSWYHLNRAILTQGYREDFEEFWNYFRNDLTPWSPYWEHLKEAWAQRNHPNLLFLFYEDMQRDLLNTIRKVANFLDKKYDIKQLTRLADYLDITNFRDNPMVNSSELRDCGIIQAGNFVRKGKSGGWKETFTADLEASADSWIEENLRDTDLRFPDFEANENNDRDALSLTVCRGDDDKKLTIMR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01057837;
90% Identity: -
80% Identity: -