Nvir007770.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Netelia virgata
Gene Symbol
-
Assembly
GCA_951802705.1
Location
OX637865.1:503418-506087[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 8e-06 0.00067 20.1 4.5 1 23 372 394 372 394 0.99
2 15 0.00073 0.061 14.0 3.3 1 23 400 423 400 424 0.96
3 15 9.5e-06 0.0008 19.9 1.8 2 23 515 536 514 536 0.97
4 15 3e-05 0.0025 18.3 2.3 1 23 542 564 542 564 0.98
5 15 0.00083 0.07 13.8 0.3 1 23 570 592 570 592 0.98
6 15 3.9e-06 0.00033 21.1 1.3 1 23 608 630 608 630 0.98
7 15 4.1e-06 0.00035 21.0 1.2 3 23 638 658 636 658 0.98
8 15 1.5e-05 0.0013 19.3 1.1 1 23 664 686 664 686 0.97
9 15 0.00023 0.02 15.5 0.2 1 23 692 714 692 714 0.99
10 15 6.8e-06 0.00057 20.4 0.3 1 23 720 743 720 743 0.94
11 15 2e-05 0.0017 18.9 1.3 1 23 749 771 749 771 0.98
12 15 0.00044 0.037 14.7 4.7 1 23 777 799 777 799 0.98
13 15 6.6e-06 0.00056 20.4 0.2 1 23 805 828 805 828 0.96
14 15 5.3e-06 0.00045 20.7 0.9 1 23 834 856 834 856 0.97
15 15 4.9e-06 0.00041 20.8 5.0 1 23 862 884 862 884 0.99

Sequence Information

Coding Sequence
ATGAATAGATCAACCACAATGAGCAACAAATGGATTCCGTCGAGGGTGGCACTGGATGAGGAGCTACCTGTCATGCTGGATGCTCCATTTGCTTCGATCAAACAAGAAAACTATTACGAAGCTGATTCAAAGGGGGAAGTAATAAGGGCAAGCATGAGCGAATGGGATAAATCTGTGAATTGTGACACAATTACAGCCTCGATCAAACAAGAAAACTATTACAAATCCAATTCAAACGAGGAAGTAACTAGGGCAAACCTGAGCGAATGGGATAATTCCGTAAATCGTGGTACAATTAAGTCTATCGATAACAAGACTGGGTCATACGCCAACGAAACTTGTGTTATTTCACCGATGAGAATAAATCACAGGGCGCAGGTCGATGTGATAGACATGCAAGTGCACGAATCCAATGGTTACAAACACGTTTTGATTTATGAAGAACAGTATTCCAAATTTATCGTTCTTAAGGCCTTGAAAAGCGTAGATCCTGGCGAAGTAGCTACCAAACTAGTCGACATTGTAACGACAATCGGAGCGCCTCGTATTATTCAGAGTGGAAATGGTAGAGATTACGCGGAACAAGTTGTAAGAGAGATTCGTGTTTTGTTAAGAGATTTTTGCGTCGTTCACGGTGATGCTACCAAAAACGTTGAagttcgacgaaatttcaagACTATATTGAAATCGTGGATGGCAAAGAATCCAGGGAGAACGTTGCACGATGGTCTCAGAACTGTTCAAGTTGCAGAAAATACAACGGCAAATTCGCGGAATGGCAAAGTACCGAGCCAATTGTTTTTTGGTCGAAACATTTGCGAGGATCTCCGAAGAGCGATAGGTGCCAAAGGACCCATGGGAAACGCTATGTCCGAGGAAGAGACGATTTTGAAATCGAAGCAAGATATGTTATCCGGGAACGATTCGAATGGAATCTCAGTTGTGACTGCGGTCGTCGAGATTGAACGAATCGACAGATCTTCagcaacgaacgagaacgtcAATGGCTTTAATGTTGGAAACGTTAAGAACGCACCGCCCATCGttctagaaaaaaatacgGATATCAATTCGAGCGAGGAAACGGTGCTGGTCGACTCCGAAAAGGATAACTTCAGATGTAAAATTTGTCAGAAACGGTACATCAAACTGGGACATTTGCGCAATCACATGAAAACTCACACGAGAATCGGCAGCTTCGAGTGCACCATATGCTCCAAGTCGTATCGTTTATCGAGTCTTTACGACAAGCACATGGAAAGGTTTCACcatcgaaagaagaaaaacgatggCGATCGAATCATCGAACGTTTACGGCAGCGGATAACCAGTAACGAAGAAGACGAGTATTCCGATAGCGGGACAAAAAAGGCTCGTCCGACGAAAGAGAAATCGGAGGAGCCaacgatcgaggaaaataacgagaaaaaatcttcTTTAAGGAGTTTCGGCAGGAAACCCTTGAAACGTTCAAAATCCATGTATAGGAACATTCACAAGAACGATTCAACGACGTCGAAACTGAACGCGAATCCTCTTCTGGAATGTACATACTGcaagcaaaaatttaatttccccAGTGTCCTGAAGAGGCATATGCGTTCTCATACGAACGAGAGACCTTACGTGTGTCAAGTATGCAGCAAAAGTTTCAAGCAACTCGGACATCTGAGCCAGCATTCGCTCACTCACACCGACTATCGTTCCTTCCAGTGTACGATATGCGCTATTAAATTCGATTCTCTGGACGCGTTGAAACTTCATTCGCAAACTCACAAAGACGATCCTATGGTCTATCGTTCGAAAGAGATTTATCGTCTGTTTGAATGCGACAGTTGCAAAAAAGTATTCACAACTAAGAGCGTTCTTGAGCGTCATATATTCACTCACACGCACGAACGGCAATTCGGTTGCAAGATTTGTGGCAAAAGATTCAAACAGGCCGGTCACGTGAAGTCTCACATGCTCGTTCATACCGGTGAGCGTAAGTTCGCGTGTACCCTATGCCCGAAACGATTCAGCCTCtcgaattcgttgaaaaaacacATGTACGTTCACAATGGCGAGAAGCCTTATCAATGCGACGTGTGCGGCGctagatttctcgaaaaacgaAATCTCAATGGTCATATGATGACGCATACCAACGAGCGACCTTTCTCGTGCAAAATTTGCGGGAAGCGTTATACCCTGGCGGATACTTTGAGACGTCACATAAGCGCCGCTCATGAGGACGGTCGTACGTATCAGTGTGAAATTTGCGCCAAAATGTTCAAACAACTTGCTCATCTGTCGGTTCACAAGAAAGTTCATAACGACGACAGACCGTTTCAGTGTCATCTTTGCGAGAAAAACTTCAAGCACAAAAATGTTCTCAAGTCACATTTGGCGATTCACGCAAACGTAAGACCTTTCGAGTGCGACGTTTGCAAAGCTACGttcgtaagaaaaacaaatctgcAGACGCACATTGCCTCGGCGCATATGAACGAGCGCCCGTATGTTTGTACAATTTGCAACAAGCGTTTTAAGCAGATAAGTCATTTAAACGGTCATATCGTTGTCCATAGCAACTCGATGCCGTACAAGTGTGATTTTTGCGATCGTCGATGCAATAGACTCGATAATTTGAAGAAACACATGAGACTGCATGCGAAAAATAAGGAGTAG
Protein Sequence
MNRSTTMSNKWIPSRVALDEELPVMLDAPFASIKQENYYEADSKGEVIRASMSEWDKSVNCDTITASIKQENYYKSNSNEEVTRANLSEWDNSVNRGTIKSIDNKTGSYANETCVISPMRINHRAQVDVIDMQVHESNGYKHVLIYEEQYSKFIVLKALKSVDPGEVATKLVDIVTTIGAPRIIQSGNGRDYAEQVVREIRVLLRDFCVVHGDATKNVEVRRNFKTILKSWMAKNPGRTLHDGLRTVQVAENTTANSRNGKVPSQLFFGRNICEDLRRAIGAKGPMGNAMSEEETILKSKQDMLSGNDSNGISVVTAVVEIERIDRSSATNENVNGFNVGNVKNAPPIVLEKNTDINSSEETVLVDSEKDNFRCKICQKRYIKLGHLRNHMKTHTRIGSFECTICSKSYRLSSLYDKHMERFHHRKKKNDGDRIIERLRQRITSNEEDEYSDSGTKKARPTKEKSEEPTIEENNEKKSSLRSFGRKPLKRSKSMYRNIHKNDSTTSKLNANPLLECTYCKQKFNFPSVLKRHMRSHTNERPYVCQVCSKSFKQLGHLSQHSLTHTDYRSFQCTICAIKFDSLDALKLHSQTHKDDPMVYRSKEIYRLFECDSCKKVFTTKSVLERHIFTHTHERQFGCKICGKRFKQAGHVKSHMLVHTGERKFACTLCPKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHMMTHTNERPFSCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDDRPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICNKRFKQISHLNGHIVVHSNSMPYKCDFCDRRCNRLDNLKKHMRLHAKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01057073; iTF_01056243;
90% Identity
-
80% Identity
-